Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g3012.t1
Gene name
Location	scaffold_04:466339..467401
Strand	+
Gene length (bp)	1062
Transcript length (bp)	996
Coding sequence length (bp)	996
Protein length (aa)	332

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10153	Efg1	rRNA-processing protein Efg1	2.5E-32	82	195

GO

GO Term	Description	Terminal node
GO:0006364	rRNA processing	Yes
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0016070	RNA metabolic process	No
GO:0008150	biological_process	No
GO:0006396	RNA processing	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0071704	organic substance metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0008152	metabolic process	No
GO:0034470	ncRNA processing	No
GO:0046483	heterocycle metabolic process	No
GO:0006807	nitrogen compound metabolic process	No
GO:0016072	rRNA metabolic process	No
GO:0090304	nucleic acid metabolic process	No
GO:0044237	cellular metabolic process	No
GO:0009987	cellular process	No
GO:0044238	primary metabolic process	No
GO:0034660	ncRNA metabolic process	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 28	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	43.65	23.77	63.54
5d_25C	Five days - 25 degrees Celsius	38.25	20.08	56.43
7d_25C	Seven days - 25 degrees Celsius	40.82	21.77	59.87
10d_25C	Ten days - 25 degrees Celsius	31.95	15.97	47.92
7d_15C	Seven days - 15 degrees Celsius	39.91	21.12	58.70
7d_30C	Seven days - 30 degrees Celsius	34.97	17.97	51.96

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.688950	no
3d_25C	7d_25C	0.853951	no
3d_25C	7d_15C	0.798394	no
3d_25C	7d_30C	0.460452	no
3d_25C	10d_25C	0.270539	no
5d_25C	7d_25C	0.864588	no
5d_25C	7d_15C	0.916475	no
5d_25C	7d_30C	0.813986	no
5d_25C	10d_25C	0.588932	no
7d_25C	7d_15C	0.956549	no
7d_25C	7d_30C	0.642855	no
7d_25C	10d_25C	0.416178	no
7d_15C	7d_30C	0.706557	no
7d_15C	10d_25C	0.482037	no
7d_30C	10d_25C	0.816262	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g3012.t1 MSTDTRDPRDRAAPPKRKSRDGSEDVPPARKKVHRKADKADGQVQFEEYSSKGDASKPKVTRKYKDKFAPKPEKE YPSINDLKKRIRDVKRLLNKIDLSADARILQERALAGYEQDLADETTRRERSSLIKKYHFVRFLDRKTATKELGR LTRREKEEGLDSKQKARLAAKIHQCRVNLNYTIYYPLTEKYISIYPNGKPDATDPKTELQTQETKSDDAKPPLWS VVEKCMEEKTLDLLREGKLRINANGEKIQAPSSGTATATDTHKEKSKKKDQQKDTDATQKDKHVSKDKNSSKKEK PVHNERAAKKHEAPQQANAEDEDDSDGGFFE*
Coding	>Pro_DTO377G3_2\|g3012.t1 ATGTCTACAGACACTCGAGACCCCCGTGATCGGGCAGCTCCCCCAAAGAGGAAGTCCCGGGATGGGTCAGAGGAT GTTCCCCCGGCCCGCAAAAAGGTGCACCGCAAGGCCGACAAAGCAGATGGCCAAGTCCAATTCGAGGAATACAGC AGCAAAGGCGATGCATCGAAGCCCAAAGTGACCCGGAAATACAAGGACAAATTTGCTCCCAAACCTGAAAAGGAA TACCCGTCGATCAACGATCTGAAAAAGCGAATTCGTGACGTGAAGCGACTACTCAACAAAATTGATTTGTCTGCC GATGCTCGCATCTTGCAGGAACGTGCCCTCGCTGGATATGAGCAAGATCTTGCGGATGAAACTACACGCAGAGAA CGGTCATCATTGATCAAGAAATATCACTTTGTCCGATTCCTTGACCGCAAAACTGCTACCAAGGAACTCGGCCGA TTGACTCGCCGCGAGAAGGAAGAGGGTCTGGATTCGAAACAAAAAGCTCGTCTTGCAGCAAAGATCCACCAATGC CGTGTGAACCTCAACTACACGATCTACTATCCTCTCACAGAGAAATATATTTCAATCTACCCCAATGGAAAACCA GACGCAACGGACCCAAAGACAGAATTGCAAACGCAAGAAACCAAATCGGACGATGCCAAGCCCCCGTTGTGGTCC GTTGTTGAGAAGTGTATGGAAGAAAAGACACTGGACCTTCTTCGTGAAGGAAAGTTGCGCATCAACGCCAATGGA GAGAAGATTCAAGCTCCGTCGTCTGGCACAGCTACAGCTACGGATACCCACAAGGAGAAGAGCAAGAAGAAAGAT CAACAGAAAGATACCGATGCTACCCAAAAGGACAAGCATGTTTCCAAAGACAAGAATAGCAGCAAGAAGGAGAAG CCTGTACACAACGAGCGGGCTGCTAAGAAACACGAGGCACCACAGCAAGCCAATGCAGAGGATGAGGATGATAGC GATGGTGGCTTCTTTGAGTAA
Transcript	>Pro_DTO377G3_2\|g3012.t1 ATGTCTACAGACACTCGAGACCCCCGTGATCGGGCAGCTCCCCCAAAGAGGAAGTCCCGGGATGGGTCAGAGGAT GTTCCCCCGGCCCGCAAAAAGGTGCACCGCAAGGCCGACAAAGCAGATGGCCAAGTCCAATTCGAGGAATACAGC AGCAAAGGCGATGCATCGAAGCCCAAAGTGACCCGGAAATACAAGGACAAATTTGCTCCCAAACCTGAAAAGGAA TACCCGTCGATCAACGATCTGAAAAAGCGAATTCGTGACGTGAAGCGACTACTCAACAAAATTGATTTGTCTGCC GATGCTCGCATCTTGCAGGAACGTGCCCTCGCTGGATATGAGCAAGATCTTGCGGATGAAACTACACGCAGAGAA CGGTCATCATTGATCAAGAAATATCACTTTGTCCGATTCCTTGACCGCAAAACTGCTACCAAGGAACTCGGCCGA TTGACTCGCCGCGAGAAGGAAGAGGGTCTGGATTCGAAACAAAAAGCTCGTCTTGCAGCAAAGATCCACCAATGC CGTGTGAACCTCAACTACACGATCTACTATCCTCTCACAGAGAAATATATTTCAATCTACCCCAATGGAAAACCA GACGCAACGGACCCAAAGACAGAATTGCAAACGCAAGAAACCAAATCGGACGATGCCAAGCCCCCGTTGTGGTCC GTTGTTGAGAAGTGTATGGAAGAAAAGACACTGGACCTTCTTCGTGAAGGAAAGTTGCGCATCAACGCCAATGGA GAGAAGATTCAAGCTCCGTCGTCTGGCACAGCTACAGCTACGGATACCCACAAGGAGAAGAGCAAGAAGAAAGAT CAACAGAAAGATACCGATGCTACCCAAAAGGACAAGCATGTTTCCAAAGACAAGAATAGCAGCAAGAAGGAGAAG CCTGTACACAACGAGCGGGCTGCTAAGAAACACGAGGCACCACAGCAAGCCAATGCAGAGGATGAGGATGATAGC GATGGTGGCTTCTTTGAGTAA
Gene	>Pro_DTO377G3_2\|g3012.t1 ATGTCTACAGACACTCGAGACCCCCGTGATCGGGCAGCTCCCCCAAAGAGGAAGTCCCGGGATGGGTCAGAGGAT GTTCCCCCGGCCCGCAAAAAGGTGCACCGCAAGGCCGACAAAGCAGATGGCCAAGTCCAATTCGAGGAATACAGC AGCAAAGGCGATGCATCGAAGCCCAAAGTGACCCGGAAATACAAGGACAAATTTGCTCCCAAACCTGAAAAGGAA TACCCGTCGATCAACGATCTGAAAAAGCGAATTCGTGACGTGAAGCGACTACTCAACAAAATTGATTTGTCTGCC GATGCTCGCATCTTGCAGGAACGTGCCCTCGCTGGATATGAGCAAGATCTTGCGGATGAAACTACACGCAGAGAA CGGTCATCATTGATCAAGAAATATCACTTTGTCCGATTCCTTGGTATGTGGCCGATATGTCTGAATGATCTTGTG ATTCCCGCTAACGTACTGTGTTCTTATTGAATAGACCGCAAAACTGCTACCAAGGAACTCGGCCGATTGACTCGC CGCGAGAAGGAAGAGGGTCTGGATTCGAAACAAAAAGCTCGTCTTGCAGCAAAGATCCACCAATGCCGTGTGAAC CTCAACTACACGATCTACTATCCTCTCACAGAGAAATATATTTCAATCTACCCCAATGGAAAACCAGACGCAACG GACCCAAAGACAGAATTGCAAACGCAAGAAACCAAATCGGACGATGCCAAGCCCCCGTTGTGGTCCGTTGTTGAG AAGTGTATGGAAGAAAAGACACTGGACCTTCTTCGTGAAGGAAAGTTGCGCATCAACGCCAATGGAGAGAAGATT CAAGCTCCGTCGTCTGGCACAGCTACAGCTACGGATACCCACAAGGAGAAGAGCAAGAAGAAAGATCAACAGAAA GATACCGATGCTACCCAAAAGGACAAGCATGTTTCCAAAGACAAGAATAGCAGCAAGAAGGAGAAGCCTGTACAC AACGAGCGGGCTGCTAAGAAACACGAGGCACCACAGCAAGCCAATGCAGAGGATGAGGATGATAGCGATGGTGGC TTCTTTGAGTAA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences