Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3012.t1
Gene name
Locationscaffold_04:466339..467401
Strand+
Gene length (bp)1062
Transcript length (bp)996
Coding sequence length (bp)996
Protein length (aa) 332

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10153 Efg1 rRNA-processing protein Efg1 1.4E-32 82 195

GO

GO Term Description Terminal node
GO:0006364 rRNA processing Yes
GO:0016072 rRNA metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0034470 ncRNA processing No
GO:1901360 organic cyclic compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0044238 primary metabolic process No
GO:0044237 cellular metabolic process No
GO:0016070 RNA metabolic process No
GO:0034660 ncRNA metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0006396 RNA processing No
GO:0006139 nucleobase-containing compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 28 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3012.t1
MSTDTRDPRDRAAPPKRKSRDGSEDVPPARKKVHRKADKADGQVQFEEYSSKGDASKPKVTRKYKDKFAPKPEKE
YPSINDLKKRIRDVKRLLNKIDLSADARILQERALAGYEQDLADETTRRERSSLIKKYHFVRFLDRKTATKELGR
LTRREKEEGLDSKQKARLAAKIHQCRVNLNYTIYYPLTEKYISIYPNGKPDATDPKTELQTQETKSDDAKPPLWS
VVEKCMEEKTLDLLREGKLRINANGEKIQAPSSGTATATDTHKEKSKKKDQQKDTDATQKDKHVSKDKNSSKKEK
PVHNERAAKKHEAPQQANAEDEDDSDGGFFE*
Coding >Pro_DTO377G3_2|g3012.t1
ATGTCTACAGACACTCGAGACCCCCGTGATCGGGCAGCTCCCCCAAAGAGGAAGTCCCGGGATGGGTCAGAGGAT
GTTCCCCCGGCCCGCAAAAAGGTGCACCGCAAGGCCGACAAAGCAGATGGCCAAGTCCAATTCGAGGAATACAGC
AGCAAAGGCGATGCATCGAAGCCCAAAGTGACCCGGAAATACAAGGACAAATTTGCTCCCAAACCTGAAAAGGAA
TACCCGTCGATCAACGATCTGAAAAAGCGAATTCGTGACGTGAAGCGACTACTCAACAAAATTGATTTGTCTGCC
GATGCTCGCATCTTGCAGGAACGTGCCCTCGCTGGATATGAGCAAGATCTTGCGGATGAAACTACACGCAGAGAA
CGGTCATCATTGATCAAGAAATATCACTTTGTCCGATTCCTTGACCGCAAAACTGCTACCAAGGAACTCGGCCGA
TTGACTCGCCGCGAGAAGGAAGAGGGTCTGGATTCGAAACAAAAAGCTCGTCTTGCAGCAAAGATCCACCAATGC
CGTGTGAACCTCAACTACACGATCTACTATCCTCTCACAGAGAAATATATTTCAATCTACCCCAATGGAAAACCA
GACGCAACGGACCCAAAGACAGAATTGCAAACGCAAGAAACCAAATCGGACGATGCCAAGCCCCCGTTGTGGTCC
GTTGTTGAGAAGTGTATGGAAGAAAAGACACTGGACCTTCTTCGTGAAGGAAAGTTGCGCATCAACGCCAATGGA
GAGAAGATTCAAGCTCCGTCGTCTGGCACAGCTACAGCTACGGATACCCACAAGGAGAAGAGCAAGAAGAAAGAT
CAACAGAAAGATACCGATGCTACCCAAAAGGACAAGCATGTTTCCAAAGACAAGAATAGCAGCAAGAAGGAGAAG
CCTGTACACAACGAGCGGGCTGCTAAGAAACACGAGGCACCACAGCAAGCCAATGCAGAGGATGAGGATGATAGC
GATGGTGGCTTCTTTGAGTAA
Transcript >Pro_DTO377G3_2|g3012.t1
ATGTCTACAGACACTCGAGACCCCCGTGATCGGGCAGCTCCCCCAAAGAGGAAGTCCCGGGATGGGTCAGAGGAT
GTTCCCCCGGCCCGCAAAAAGGTGCACCGCAAGGCCGACAAAGCAGATGGCCAAGTCCAATTCGAGGAATACAGC
AGCAAAGGCGATGCATCGAAGCCCAAAGTGACCCGGAAATACAAGGACAAATTTGCTCCCAAACCTGAAAAGGAA
TACCCGTCGATCAACGATCTGAAAAAGCGAATTCGTGACGTGAAGCGACTACTCAACAAAATTGATTTGTCTGCC
GATGCTCGCATCTTGCAGGAACGTGCCCTCGCTGGATATGAGCAAGATCTTGCGGATGAAACTACACGCAGAGAA
CGGTCATCATTGATCAAGAAATATCACTTTGTCCGATTCCTTGACCGCAAAACTGCTACCAAGGAACTCGGCCGA
TTGACTCGCCGCGAGAAGGAAGAGGGTCTGGATTCGAAACAAAAAGCTCGTCTTGCAGCAAAGATCCACCAATGC
CGTGTGAACCTCAACTACACGATCTACTATCCTCTCACAGAGAAATATATTTCAATCTACCCCAATGGAAAACCA
GACGCAACGGACCCAAAGACAGAATTGCAAACGCAAGAAACCAAATCGGACGATGCCAAGCCCCCGTTGTGGTCC
GTTGTTGAGAAGTGTATGGAAGAAAAGACACTGGACCTTCTTCGTGAAGGAAAGTTGCGCATCAACGCCAATGGA
GAGAAGATTCAAGCTCCGTCGTCTGGCACAGCTACAGCTACGGATACCCACAAGGAGAAGAGCAAGAAGAAAGAT
CAACAGAAAGATACCGATGCTACCCAAAAGGACAAGCATGTTTCCAAAGACAAGAATAGCAGCAAGAAGGAGAAG
CCTGTACACAACGAGCGGGCTGCTAAGAAACACGAGGCACCACAGCAAGCCAATGCAGAGGATGAGGATGATAGC
GATGGTGGCTTCTTTGAGTAA
Gene >Pro_DTO377G3_2|g3012.t1
ATGTCTACAGACACTCGAGACCCCCGTGATCGGGCAGCTCCCCCAAAGAGGAAGTCCCGGGATGGGTCAGAGGAT
GTTCCCCCGGCCCGCAAAAAGGTGCACCGCAAGGCCGACAAAGCAGATGGCCAAGTCCAATTCGAGGAATACAGC
AGCAAAGGCGATGCATCGAAGCCCAAAGTGACCCGGAAATACAAGGACAAATTTGCTCCCAAACCTGAAAAGGAA
TACCCGTCGATCAACGATCTGAAAAAGCGAATTCGTGACGTGAAGCGACTACTCAACAAAATTGATTTGTCTGCC
GATGCTCGCATCTTGCAGGAACGTGCCCTCGCTGGATATGAGCAAGATCTTGCGGATGAAACTACACGCAGAGAA
CGGTCATCATTGATCAAGAAATATCACTTTGTCCGATTCCTTGGTATGTGGCCGATATGTCTGAATGATCTTGTG
ATTCCCGCTAACGTACTGTGTTCTTATTGAATAGACCGCAAAACTGCTACCAAGGAACTCGGCCGATTGACTCGC
CGCGAGAAGGAAGAGGGTCTGGATTCGAAACAAAAAGCTCGTCTTGCAGCAAAGATCCACCAATGCCGTGTGAAC
CTCAACTACACGATCTACTATCCTCTCACAGAGAAATATATTTCAATCTACCCCAATGGAAAACCAGACGCAACG
GACCCAAAGACAGAATTGCAAACGCAAGAAACCAAATCGGACGATGCCAAGCCCCCGTTGTGGTCCGTTGTTGAG
AAGTGTATGGAAGAAAAGACACTGGACCTTCTTCGTGAAGGAAAGTTGCGCATCAACGCCAATGGAGAGAAGATT
CAAGCTCCGTCGTCTGGCACAGCTACAGCTACGGATACCCACAAGGAGAAGAGCAAGAAGAAAGATCAACAGAAA
GATACCGATGCTACCCAAAAGGACAAGCATGTTTCCAAAGACAAGAATAGCAGCAAGAAGGAGAAGCCTGTACAC
AACGAGCGGGCTGCTAAGAAACACGAGGCACCACAGCAAGCCAATGCAGAGGATGAGGATGATAGCGATGGTGGC
TTCTTTGAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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