© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2985.t1 |
| Gene name | |
| Location | scaffold_04:401449..403551 |
| Strand | + |
| Gene length (bp) | 2102 |
| Transcript length (bp) | 2043 |
| Coding sequence length (bp) | 2043 |
| Protein length (aa) | 681 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04791 | LMBR1 | LMBR1-like membrane protein | 3.1E-133 | 14 | 516 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 36 | 21 |
| 2 | 43 | 65 | 22 |
| 3 | 91 | 113 | 22 |
| 4 | 134 | 153 | 19 |
| 5 | 163 | 185 | 22 |
| 6 | 358 | 380 | 22 |
| 7 | 404 | 426 | 22 |
| 8 | 447 | 469 | 22 |
| 9 | 498 | 517 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 94.02 | 57.39 | 130.65 |
| 5d_25C | Five days - 25 degrees Celsius | 54.18 | 32.68 | 75.68 |
| 7d_25C | Seven days - 25 degrees Celsius | 59.75 | 35.64 | 83.87 |
| 10d_25C | Ten days - 25 degrees Celsius | 43.41 | 26.32 | 60.50 |
| 7d_15C | Seven days - 15 degrees Celsius | 61.79 | 37.02 | 86.57 |
| 7d_30C | Seven days - 30 degrees Celsius | 43.68 | 26.48 | 60.88 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.004840 | yes |
| 3d_25C | 7d_25C | 0.028409 | yes |
| 3d_25C | 7d_15C | 0.046955 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.744303 | no |
| 5d_25C | 7d_15C | 0.635009 | no |
| 5d_25C | 7d_30C | 0.385380 | no |
| 5d_25C | 10d_25C | 0.360975 | no |
| 7d_25C | 7d_15C | 0.923520 | no |
| 7d_25C | 7d_30C | 0.174003 | no |
| 7d_25C | 10d_25C | 0.159527 | no |
| 7d_15C | 7d_30C | 0.111330 | no |
| 7d_15C | 10d_25C | 0.103838 | no |
| 7d_30C | 10d_25C | 0.986518 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2985.t1 MFPLSVSPISVGSNVFFAFALFLISALVLLLLRRFLTLRATPAYLIVPIFLALALPASVVLLVPIDLASSSRDGS GPKAIWLPERMVLVCWRIAYWLIFVLTWVILPLLGEYVDSGYREPKGRLMYSLRSNAKYQMIVLGCALVGLIYVS ISNGFEFTSIKGLVMALAYVWGLVLAIYLMGHGLVSIPRNLLRNSNVSGRLRRLQAHAPKVHDRLMDSVNELANL NGQVSQLQRRKTGTARDFQEWIEELREGHGQSDVRAPILESPDTSATIPSVITERYLADLTRRLQRARHMKTRFV DEWDRLVQLSADLQAIINSAASKKLEFAPAPRRSSCIPRVKFLTPYMRYQLYSNVIPSVRLALGAFFAVASVCIV WSEMIKSLAPHLSAVSLTVVPHWKDNPVGFGGQLTASAWLLYMCSAALVGVSDVKVWGNRALVRRNTYGESACWY AGLVARLTVPIAYNFLTFLPKEFRRTTTFYQFLGKLINLTPLGKGFDFIFPIFILLPICATMFNLYGRIKNIFGC GLAEDDDIHDVENNPAGYGMGGWREGRDLIERELNGFGSLAVSSRGGRSTWASDRDDEGSPGSSRLRLPVAEGSQ PAQRTVVAPTIVEGEDEEDEGFFQSFAHRVKNTFDTTSTPRWFQGEPFRLPRWMSGDNNPTEEASALFGGRDVPG RLRLG* |
| Coding | >Pro_DTO377G3_2|g2985.t1 ATGTTTCCCTTATCTGTGTCGCCCATCTCGGTGGGTTCGAACGTCTTTTTCGCATTTGCCCTCTTCCTCATCTCC GCACTTGTGTTACTTCTCCTGCGACGGTTTCTCACCCTCCGGGCCACCCCCGCGTATTTAATTGTCCCTATATTC CTAGCTCTAGCTCTGCCAGCTAGTGTTGTGCTTTTGGTCCCCATCGATTTAGCATCCAGTTCGCGGGATGGATCC GGTCCCAAAGCAATCTGGCTACCGGAACGAATGGTTTTGGTCTGCTGGCGCATTGCCTACTGGTTAATCTTTGTT CTCACCTGGGTTATCCTCCCATTACTCGGTGAATATGTCGACTCGGGCTACCGTGAACCGAAAGGCCGGCTTATG TACTCTCTCCGATCGAACGCCAAATACCAGATGATTGTTCTGGGATGTGCTCTGGTAGGGTTGATCTACGTTTCA ATCTCGAATGGCTTCGAATTCACATCCATCAAAGGTCTCGTCATGGCATTGGCATATGTGTGGGGTCTCGTCCTT GCCATTTACCTCATGGGTCATGGGCTTGTTTCGATCCCGCGCAATCTGCTCCGAAACTCCAATGTAAGCGGTCGG CTACGCAGACTCCAGGCCCATGCGCCCAAGGTGCACGATCGCCTGATGGACTCGGTCAATGAGTTAGCGAATCTC AATGGCCAGGTTTCGCAACTACAACGCCGTAAGACGGGAACCGCTCGTGACTTCCAGGAATGGATTGAAGAGCTT CGGGAAGGCCACGGCCAATCCGACGTGCGCGCCCCGATCCTCGAGTCACCCGATACATCCGCAACGATACCTTCT GTCATCACGGAACGCTATCTGGCCGACCTTACACGGCGGCTTCAGCGTGCTCGGCATATGAAGACCCGATTTGTA GACGAGTGGGATCGGCTAGTCCAATTATCAGCCGATCTGCAAGCCATCATTAATTCTGCAGCTTCAAAGAAGCTG GAATTTGCACCGGCTCCACGTCGGTCATCCTGCATCCCTCGTGTGAAATTCCTCACCCCGTATATGCGGTACCAG CTGTATTCCAACGTCATTCCCTCGGTTCGGTTGGCCTTAGGTGCATTCTTCGCAGTGGCATCAGTCTGCATTGTT TGGTCGGAAATGATCAAGTCTTTGGCGCCCCATCTCTCTGCCGTGAGTTTGACCGTGGTGCCTCACTGGAAGGAC AATCCAGTTGGCTTTGGTGGTCAACTCACTGCCTCTGCCTGGCTATTGTACATGTGTTCGGCGGCTCTCGTTGGT GTCAGTGATGTCAAGGTATGGGGAAACCGCGCGCTTGTCCGTCGTAATACATATGGTGAGAGTGCCTGCTGGTAC GCCGGTCTTGTGGCTCGGTTGACAGTACCAATTGCGTACAACTTCTTGACCTTCTTGCCAAAAGAGTTTAGGCGA ACGACTACTTTCTACCAATTCCTTGGTAAACTCATCAACCTGACCCCCCTCGGGAAAGGCTTTGATTTCATCTTC CCAATCTTCATTCTCCTGCCTATCTGCGCAACAATGTTCAACCTGTACGGGCGTATCAAAAACATCTTCGGGTGC GGCCTTGCAGAGGACGATGATATCCACGATGTCGAAAACAACCCTGCCGGGTATGGCATGGGTGGCTGGCGTGAG GGTCGCGACCTCATTGAACGGGAATTGAATGGCTTCGGTTCTCTGGCGGTATCCTCCCGTGGTGGTCGCTCAACG TGGGCGTCGGATCGTGATGATGAAGGTTCCCCTGGGTCATCCAGACTGCGGCTCCCGGTTGCAGAGGGCTCCCAA CCTGCCCAGAGGACAGTTGTTGCGCCTACTATTGTAGAAGGCGAGGATGAGGAAGACGAGGGCTTCTTCCAGTCC TTTGCGCATCGTGTCAAAAACACATTTGATACTACCAGCACTCCTCGGTGGTTCCAGGGTGAGCCATTCCGACTT CCGCGCTGGATGTCGGGTGATAACAATCCCACAGAAGAAGCTTCGGCACTATTCGGAGGTCGGGACGTGCCTGGT CGTCTGCGCCTAGGTTGA |
| Transcript | >Pro_DTO377G3_2|g2985.t1 ATGTTTCCCTTATCTGTGTCGCCCATCTCGGTGGGTTCGAACGTCTTTTTCGCATTTGCCCTCTTCCTCATCTCC GCACTTGTGTTACTTCTCCTGCGACGGTTTCTCACCCTCCGGGCCACCCCCGCGTATTTAATTGTCCCTATATTC CTAGCTCTAGCTCTGCCAGCTAGTGTTGTGCTTTTGGTCCCCATCGATTTAGCATCCAGTTCGCGGGATGGATCC GGTCCCAAAGCAATCTGGCTACCGGAACGAATGGTTTTGGTCTGCTGGCGCATTGCCTACTGGTTAATCTTTGTT CTCACCTGGGTTATCCTCCCATTACTCGGTGAATATGTCGACTCGGGCTACCGTGAACCGAAAGGCCGGCTTATG TACTCTCTCCGATCGAACGCCAAATACCAGATGATTGTTCTGGGATGTGCTCTGGTAGGGTTGATCTACGTTTCA ATCTCGAATGGCTTCGAATTCACATCCATCAAAGGTCTCGTCATGGCATTGGCATATGTGTGGGGTCTCGTCCTT GCCATTTACCTCATGGGTCATGGGCTTGTTTCGATCCCGCGCAATCTGCTCCGAAACTCCAATGTAAGCGGTCGG CTACGCAGACTCCAGGCCCATGCGCCCAAGGTGCACGATCGCCTGATGGACTCGGTCAATGAGTTAGCGAATCTC AATGGCCAGGTTTCGCAACTACAACGCCGTAAGACGGGAACCGCTCGTGACTTCCAGGAATGGATTGAAGAGCTT CGGGAAGGCCACGGCCAATCCGACGTGCGCGCCCCGATCCTCGAGTCACCCGATACATCCGCAACGATACCTTCT GTCATCACGGAACGCTATCTGGCCGACCTTACACGGCGGCTTCAGCGTGCTCGGCATATGAAGACCCGATTTGTA GACGAGTGGGATCGGCTAGTCCAATTATCAGCCGATCTGCAAGCCATCATTAATTCTGCAGCTTCAAAGAAGCTG GAATTTGCACCGGCTCCACGTCGGTCATCCTGCATCCCTCGTGTGAAATTCCTCACCCCGTATATGCGGTACCAG CTGTATTCCAACGTCATTCCCTCGGTTCGGTTGGCCTTAGGTGCATTCTTCGCAGTGGCATCAGTCTGCATTGTT TGGTCGGAAATGATCAAGTCTTTGGCGCCCCATCTCTCTGCCGTGAGTTTGACCGTGGTGCCTCACTGGAAGGAC AATCCAGTTGGCTTTGGTGGTCAACTCACTGCCTCTGCCTGGCTATTGTACATGTGTTCGGCGGCTCTCGTTGGT GTCAGTGATGTCAAGGTATGGGGAAACCGCGCGCTTGTCCGTCGTAATACATATGGTGAGAGTGCCTGCTGGTAC GCCGGTCTTGTGGCTCGGTTGACAGTACCAATTGCGTACAACTTCTTGACCTTCTTGCCAAAAGAGTTTAGGCGA ACGACTACTTTCTACCAATTCCTTGGTAAACTCATCAACCTGACCCCCCTCGGGAAAGGCTTTGATTTCATCTTC CCAATCTTCATTCTCCTGCCTATCTGCGCAACAATGTTCAACCTGTACGGGCGTATCAAAAACATCTTCGGGTGC GGCCTTGCAGAGGACGATGATATCCACGATGTCGAAAACAACCCTGCCGGGTATGGCATGGGTGGCTGGCGTGAG GGTCGCGACCTCATTGAACGGGAATTGAATGGCTTCGGTTCTCTGGCGGTATCCTCCCGTGGTGGTCGCTCAACG TGGGCGTCGGATCGTGATGATGAAGGTTCCCCTGGGTCATCCAGACTGCGGCTCCCGGTTGCAGAGGGCTCCCAA CCTGCCCAGAGGACAGTTGTTGCGCCTACTATTGTAGAAGGCGAGGATGAGGAAGACGAGGGCTTCTTCCAGTCC TTTGCGCATCGTGTCAAAAACACATTTGATACTACCAGCACTCCTCGGTGGTTCCAGGGTGAGCCATTCCGACTT CCGCGCTGGATGTCGGGTGATAACAATCCCACAGAAGAAGCTTCGGCACTATTCGGAGGTCGGGACGTGCCTGGT CGTCTGCGCCTAGGTTGA |
| Gene | >Pro_DTO377G3_2|g2985.t1 ATGTTTCCCTTATCTGTGTCGCCCATCTCGGTGGGTTCGAACGTCTTTTTCGCATTTGCCCTCTTCCTCATCTCC GCACTTGTGTTACTTCTCCTGCGACGGTTTCTCACCCTCCGGGCCACCCCCGCGTATTTAATTGTCCCTATATTC CTAGCTCTAGCTCTGCCAGCTAGTGTTGTGCTTTTGGTCCCCATCGATTTAGCATCCAGTTCGCGGGATGGATCC GGTCCCAAAGCAATCTGGCTACCGGAACGAATGGTTTTGGTCTGCTGGCGCATTGCCTACTGGTTAATCTTTGTT CTCACCTGGTAAGTGTACTGCGCTCTTCATAACCAATGGCTGTCACTCATTCTTATCTCTCTTCCAGGGTTATCC TCCCATTACTCGGTGAATATGTCGACTCGGGCTACCGTGAACCGAAAGGCCGGCTTATGTACTCTCTCCGATCGA ACGCCAAATACCAGATGATTGTTCTGGGATGTGCTCTGGTAGGGTTGATCTACGTTTCAATCTCGAATGGCTTCG AATTCACATCCATCAAAGGTCTCGTCATGGCATTGGCATATGTGTGGGGTCTCGTCCTTGCCATTTACCTCATGG GTCATGGGCTTGTTTCGATCCCGCGCAATCTGCTCCGAAACTCCAATGTAAGCGGTCGGCTACGCAGACTCCAGG CCCATGCGCCCAAGGTGCACGATCGCCTGATGGACTCGGTCAATGAGTTAGCGAATCTCAATGGCCAGGTTTCGC AACTACAACGCCGTAAGACGGGAACCGCTCGTGACTTCCAGGAATGGATTGAAGAGCTTCGGGAAGGCCACGGCC AATCCGACGTGCGCGCCCCGATCCTCGAGTCACCCGATACATCCGCAACGATACCTTCTGTCATCACGGAACGCT ATCTGGCCGACCTTACACGGCGGCTTCAGCGTGCTCGGCATATGAAGACCCGATTTGTAGACGAGTGGGATCGGC TAGTCCAATTATCAGCCGATCTGCAAGCCATCATTAATTCTGCAGCTTCAAAGAAGCTGGAATTTGCACCGGCTC CACGTCGGTCATCCTGCATCCCTCGTGTGAAATTCCTCACCCCGTATATGCGGTACCAGCTGTATTCCAACGTCA TTCCCTCGGTTCGGTTGGCCTTAGGTGCATTCTTCGCAGTGGCATCAGTCTGCATTGTTTGGTCGGAAATGATCA AGTCTTTGGCGCCCCATCTCTCTGCCGTGAGTTTGACCGTGGTGCCTCACTGGAAGGACAATCCAGTTGGCTTTG GTGGTCAACTCACTGCCTCTGCCTGGCTATTGTACATGTGTTCGGCGGCTCTCGTTGGTGTCAGTGATGTCAAGG TATGGGGAAACCGCGCGCTTGTCCGTCGTAATACATATGGTGAGAGTGCCTGCTGGTACGCCGGTCTTGTGGCTC GGTTGACAGTACCAATTGCGTACAACTTCTTGACCTTCTTGCCAAAAGAGTTTAGGCGAACGACTACTTTCTACC AATTCCTTGGTAAACTCATCAACCTGACCCCCCTCGGGAAAGGCTTTGATTTCATCTTCCCAATCTTCATTCTCC TGCCTATCTGCGCAACAATGTTCAACCTGTACGGGCGTATCAAAAACATCTTCGGGTGCGGCCTTGCAGAGGACG ATGATATCCACGATGTCGAAAACAACCCTGCCGGGTATGGCATGGGTGGCTGGCGTGAGGGTCGCGACCTCATTG AACGGGAATTGAATGGCTTCGGTTCTCTGGCGGTATCCTCCCGTGGTGGTCGCTCAACGTGGGCGTCGGATCGTG ATGATGAAGGTTCCCCTGGGTCATCCAGACTGCGGCTCCCGGTTGCAGAGGGCTCCCAACCTGCCCAGAGGACAG TTGTTGCGCCTACTATTGTAGAAGGCGAGGATGAGGAAGACGAGGGCTTCTTCCAGTCCTTTGCGCATCGTGTCA AAAACACATTTGATACTACCAGCACTCCTCGGTGGTTCCAGGGTGAGCCATTCCGACTTCCGCGCTGGATGTCGG GTGATAACAATCCCACAGAAGAAGCTTCGGCACTATTCGGAGGTCGGGACGTGCCTGGTCGTCTGCGCCTAGGTT GA |