© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2972.t1 |
| Gene name | |
| Location | scaffold_04:360507..362305 |
| Strand | + |
| Gene length (bp) | 1798 |
| Transcript length (bp) | 1605 |
| Coding sequence length (bp) | 1605 |
| Protein length (aa) | 535 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 4.6E-51 | 55 | 503 |
| PF00324 | AA_permease | Amino acid permease | 8.5E-26 | 62 | 514 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 60 | 82 | 22 |
| 2 | 92 | 114 | 22 |
| 3 | 135 | 157 | 22 |
| 4 | 161 | 179 | 18 |
| 5 | 186 | 208 | 22 |
| 6 | 213 | 234 | 21 |
| 7 | 294 | 316 | 22 |
| 8 | 347 | 369 | 22 |
| 9 | 394 | 413 | 19 |
| 10 | 423 | 445 | 22 |
| 11 | 458 | 480 | 22 |
| 12 | 495 | 514 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2972.t1 MADDATANQRRSSKSKGSEAYAPAEYPNIEEGKQSSANGVLEALGYEPELIRNRSTLQVAFMSFVLAAIPYGLAT TFTYPLVGGGPVNIIWGWLAVSLITLCVAASLGEITSVYPTAGGVYYQTFMISPPSYRRIASWICGWSYVVGNIT ITLAVNLGSTLFLISCINVFESSPGVGIFEAETYQVFLIFIAVTFLANAISTYGNAWLPYLDTFAIFVTFIGVLA IVICVLVVAKEGRHDAKYVFTSFEPISGWPAGWSFCVGLLQAAYSTSSTGMVICMCEEVQQPSTQVPKAMVGTVI LNTLAGFLFLIPLVFVLPDTKVLAALESGQPVPSIIKSAVGSSVGSFLLLLPLILLSMFCVIGCTTTVSRSTWAF ARDGGIPGSRWWKQVNRDGVPFNAMMLGMVIQILLGFIYFGSTTAFNAFTGVGVITLTVSYACPIVVSLAGGRRH IKNGQFDLGTLGLVCNIVTLAWSLLAIPLFCMPSSIPVAADTVNYAPVVFVAFILIASGWYWVWGYEKYVGPPTM DDEFRSSDL* |
| Coding | >Pro_DTO377G3_2|g2972.t1 ATGGCAGACGATGCTACTGCCAACCAGCGTCGTTCTTCAAAGAGCAAAGGCTCCGAGGCCTATGCACCTGCGGAA TACCCTAACATCGAAGAAGGCAAACAATCGTCAGCAAATGGGGTACTAGAAGCCCTGGGCTATGAGCCTGAACTC ATTCGAAACCGCTCCACGCTTCAGGTGGCCTTCATGTCCTTTGTGCTCGCAGCAATTCCATACGGACTGGCTACG ACTTTCACCTACCCTCTTGTTGGGGGAGGCCCTGTCAACATAATCTGGGGATGGCTTGCCGTTTCTTTGATTACG CTATGTGTGGCTGCTTCACTTGGCGAAATCACCTCAGTCTATCCAACTGCCGGAGGGGTCTACTACCAGACTTTT ATGATATCTCCACCGTCATATCGAAGAATCGCCTCGTGGATTTGCGGATGGTCATATGTTGTTGGAAATATCACC ATCACGCTTGCAGTCAACCTTGGGAGTACTCTATTCCTCATTTCATGTATCAACGTTTTCGAATCCTCTCCAGGA GTAGGAATCTTCGAAGCGGAAACGTACCAAGTTTTTCTTATATTTATCGCAGTCACATTTCTCGCTAACGCAATA TCGACATATGGAAATGCATGGCTGCCTTACCTTGACACATTCGCAATATTCGTGACATTTATAGGAGTGTTGGCT ATTGTGATATGTGTTCTTGTGGTTGCGAAAGAGGGTAGACATGACGCCAAATATGTTTTTACTAGTTTTGAGCCG ATATCTGGCTGGCCAGCAGGCTGGTCTTTCTGCGTCGGACTTTTACAGGCAGCTTATAGCACTTCTTCCACTGGT ATGGTGATTTGTATGTGTGAAGAAGTTCAGCAACCATCAACACAAGTCCCAAAAGCAATGGTTGGAACGGTCATT CTAAATACCCTCGCCGGGTTCCTCTTCCTTATTCCATTGGTTTTCGTGCTCCCCGACACAAAGGTTTTAGCAGCT CTCGAATCCGGTCAACCAGTTCCGAGTATTATCAAGTCCGCTGTTGGAAGTTCAGTTGGATCATTCCTGCTTCTC CTACCATTGATATTGCTCTCGATGTTCTGTGTCATTGGCTGTACTACGACCGTCTCCCGAAGCACCTGGGCGTTT GCTCGCGATGGAGGTATACCAGGCTCCAGATGGTGGAAGCAGGTAAACAGAGACGGCGTACCTTTCAATGCTATG ATGCTTGGCATGGTTATTCAGATATTGCTTGGCTTTATCTACTTCGGGTCAACTACTGCATTTAATGCATTCACA GGCGTCGGAGTTATTACCTTGACTGTCAGCTATGCTTGCCCAATCGTTGTGTCTCTTGCTGGAGGTCGAAGACAC ATAAAGAATGGCCAATTCGATCTTGGCACACTCGGGCTGGTTTGCAATATTGTGACATTGGCATGGAGTCTTCTT GCCATTCCGCTATTTTGCATGCCTTCTTCAATCCCCGTCGCTGCCGATACGGTCAACTATGCACCGGTGGTGTTT GTTGCATTTATACTAATTGCTTCTGGATGGTACTGGGTTTGGGGCTACGAGAAGTATGTTGGGCCGCCAACAATG GACGATGAGTTTCGCTCATCAGACTTGTAA |
| Transcript | >Pro_DTO377G3_2|g2972.t1 ATGGCAGACGATGCTACTGCCAACCAGCGTCGTTCTTCAAAGAGCAAAGGCTCCGAGGCCTATGCACCTGCGGAA TACCCTAACATCGAAGAAGGCAAACAATCGTCAGCAAATGGGGTACTAGAAGCCCTGGGCTATGAGCCTGAACTC ATTCGAAACCGCTCCACGCTTCAGGTGGCCTTCATGTCCTTTGTGCTCGCAGCAATTCCATACGGACTGGCTACG ACTTTCACCTACCCTCTTGTTGGGGGAGGCCCTGTCAACATAATCTGGGGATGGCTTGCCGTTTCTTTGATTACG CTATGTGTGGCTGCTTCACTTGGCGAAATCACCTCAGTCTATCCAACTGCCGGAGGGGTCTACTACCAGACTTTT ATGATATCTCCACCGTCATATCGAAGAATCGCCTCGTGGATTTGCGGATGGTCATATGTTGTTGGAAATATCACC ATCACGCTTGCAGTCAACCTTGGGAGTACTCTATTCCTCATTTCATGTATCAACGTTTTCGAATCCTCTCCAGGA GTAGGAATCTTCGAAGCGGAAACGTACCAAGTTTTTCTTATATTTATCGCAGTCACATTTCTCGCTAACGCAATA TCGACATATGGAAATGCATGGCTGCCTTACCTTGACACATTCGCAATATTCGTGACATTTATAGGAGTGTTGGCT ATTGTGATATGTGTTCTTGTGGTTGCGAAAGAGGGTAGACATGACGCCAAATATGTTTTTACTAGTTTTGAGCCG ATATCTGGCTGGCCAGCAGGCTGGTCTTTCTGCGTCGGACTTTTACAGGCAGCTTATAGCACTTCTTCCACTGGT ATGGTGATTTGTATGTGTGAAGAAGTTCAGCAACCATCAACACAAGTCCCAAAAGCAATGGTTGGAACGGTCATT CTAAATACCCTCGCCGGGTTCCTCTTCCTTATTCCATTGGTTTTCGTGCTCCCCGACACAAAGGTTTTAGCAGCT CTCGAATCCGGTCAACCAGTTCCGAGTATTATCAAGTCCGCTGTTGGAAGTTCAGTTGGATCATTCCTGCTTCTC CTACCATTGATATTGCTCTCGATGTTCTGTGTCATTGGCTGTACTACGACCGTCTCCCGAAGCACCTGGGCGTTT GCTCGCGATGGAGGTATACCAGGCTCCAGATGGTGGAAGCAGGTAAACAGAGACGGCGTACCTTTCAATGCTATG ATGCTTGGCATGGTTATTCAGATATTGCTTGGCTTTATCTACTTCGGGTCAACTACTGCATTTAATGCATTCACA GGCGTCGGAGTTATTACCTTGACTGTCAGCTATGCTTGCCCAATCGTTGTGTCTCTTGCTGGAGGTCGAAGACAC ATAAAGAATGGCCAATTCGATCTTGGCACACTCGGGCTGGTTTGCAATATTGTGACATTGGCATGGAGTCTTCTT GCCATTCCGCTATTTTGCATGCCTTCTTCAATCCCCGTCGCTGCCGATACGGTCAACTATGCACCGGTGGTGTTT GTTGCATTTATACTAATTGCTTCTGGATGGTACTGGGTTTGGGGCTACGAGAAGTATGTTGGGCCGCCAACAATG GACGATGAGTTTCGCTCATCAGACTTGTAA |
| Gene | >Pro_DTO377G3_2|g2972.t1 ATGGCAGACGATGCTACTGCCAACCAGCGTCGTTCTTCAAAGAGCAAAGGCTCCGAGGCCTATGCACCTGCGGAA TACCCTAACATCGAAGAAGGCAAACAATCGTCAGCAAATGGGGTACTAGAAGCCCTGGGCTATGAGCCTGAACTC ATTCGAAACCGCTCCACGCTTCAGGTGGCCTTCATGTCCTTTGTGCTCGCAGCAATTCCATACGGACTGGCTACG ACTTTCACCTACCCTCTTGTTGGGGGAGGCCCTGTCAACATAATCTGGGGATGGCTTGCCGTTTCTTTGATTACG CTATGTGTGGCTGCTTCACTTGGCGAAATCACCTCAGTCTATCCAACTGCCGGAGGGGTCTACTACCAGACTTTT ATGATATCTCCACCGTCATATCGAAGAATCGCCTCGTGGATTTGCGGATGGTCATATGTTGTTGGAAATATCACC ATCACGCTTGCAGTCAACCTTGGGAGTACTCTATTCCTCATTTCATGTATCAACGTTTTCGAATCCTCTCCAGGA GTAGGAATCTTCGAAGCGGAAACGTACCAAGTTTTTCTTATATTTATCGCAGTCACATTTCTCGCTAACGCAATA TCGACATATGGAAATGCATGGCTGCCTTACCTTGACGTATGTCTAAACCATAACCCTTCCAACATCGCTTGCTAA TACAGAAGCTAGACATTCGCAATATTCGTGACATTTATAGGAGTGTTGGCTATTGTGATATGTGTTCTTGTGGTT GCGAAAGAGGGTAGACATGACGCCAAATATGTTTTTACTAGTTTTGAGCCGATATCTGGCTGGCCAGCAGGCTGG TCTTTCTGCGTCGGACTTTTACAGGCAGCTTATAGCACTTCTTCCACTGGTATGGTGATTTGGTATGTAACATGT TTTGTTTTCCCACCCCAGATGACTATCTCCCATCTCATTTCTACTATGAAACCCCTATATCTGACGCGTCAAAAG TATGTGTGAAGAAGTTCAGCAACCATCAACACAAGTCCCAAAAGCAATGGTTGGAACGGTCATTCTAAATACCCT CGCCGGGTTCCTCTTCCTTATTCCATTGGTTTTCGTGCTCCCCGACACAAAGGTTTTAGCAGCTCTCGAATCCGG TCAACCAGTTCCGAGTATTATCAAGTCCGCTGTTGGAAGTTCAGTTGGATCATTCCTGCTTCTCCTACCATTGAT ATTGCTCTCGATGTTCTGTGTCATTGGCTGTACTACGACCGTCTCCCGAAGCACCTGGGCGTTTGCTCGCGATGG AGGTATACCAGGCTCCAGATGGTGGAAGCAGGTAAACAGAGACGGCGTACCTTTCAATGCTATGATGCTTGGCAT GGTTATTCAGATATTGCTTGGCTTTATCTACTTCGGGTCAACTACTGCATTTAATGCATTCACAGGCGTCGGAGT TATTACCTTGACTGTCAGCTATGCTTGCCCAATCGTTGTGTCTCTTGCTGGAGGTCGAAGACACATAAAGAATGG CCAATTCGATCTTGGCACACTCGGGCTGGTTTGCAATATTGTGACATTGGGTAAGCATGCACGATGTGGGCACGA TTTATCGCTATCGCTAATGCATATTCTAGCATGGAGTCTTCTTGCCATTCCGCTATTTTGCATGCCTTCTTCAAT CCCCGTCGCTGCCGATACGGTCAACTATGCACCGGTGGTGTTTGTTGCATTTATACTAATTGCTTCTGGATGGTA CTGGGTTTGGGGCTACGAGAAGTATGTTGGGCCGCCAACAATGGACGATGAGTTTCGCTCATCAGACTTGTAA |