Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2959.t1
Gene name
Locationscaffold_04:323300..323652
Strand+
Gene length (bp)352
Transcript length (bp)213
Coding sequence length (bp)213
Protein length (aa) 71

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 39 0.5

Transmembrane Domains

Domain # Start End Length
1 20 42 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 5.87 0.00 14.51
5d_25C Five days - 25 degrees Celsius 8.67 0.00 20.17
7d_25C Seven days - 25 degrees Celsius 6.52 0.00 16.66
10d_25C Ten days - 25 degrees Celsius 11.22 4.51 17.92
7d_15C Seven days - 15 degrees Celsius 14.78 0.00 32.34
7d_30C Seven days - 30 degrees Celsius 13.05 0.00 29.14

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.712040 no
3d_25C 7d_25C 0.933752 no
3d_25C 7d_15C 0.295431 no
3d_25C 7d_30C 0.386056 no
3d_25C 10d_25C 0.489669 no
5d_25C 7d_25C 0.808338 no
5d_25C 7d_15C 0.556818 no
5d_25C 7d_30C 0.665932 no
5d_25C 10d_25C 0.801685 no
7d_25C 7d_15C 0.388651 no
7d_25C 7d_30C 0.460358 no
7d_25C 10d_25C 0.592448 no
7d_15C 7d_30C 0.916523 no
7d_15C 10d_25C 0.785379 no
7d_30C 10d_25C 0.895001 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2959.t1
MTRGGAVDPMCREWDPCVGLFAARLFALIILSEPALHAGIHLTYRVGETKVKHRSYSVIISLIYKKKPKK*
Coding >Pro_DTO377G3_2|g2959.t1
ATGACTCGCGGTGGAGCGGTGGATCCAATGTGCAGAGAGTGGGACCCCTGTGTCGGGCTCTTTGCTGCGAGATTA
TTCGCACTAATAATCTTGTCGGAACCGGCTCTCCATGCCGGGATACACTTAACGTATCGAGTGGGCGAAACCAAG
GTGAAACACCGGTCTTACAGCGTCATAATAAGTCTGATTTACAAAAAGAAGCCAAAAAAATAG
Transcript >Pro_DTO377G3_2|g2959.t1
ATGACTCGCGGTGGAGCGGTGGATCCAATGTGCAGAGAGTGGGACCCCTGTGTCGGGCTCTTTGCTGCGAGATTA
TTCGCACTAATAATCTTGTCGGAACCGGCTCTCCATGCCGGGATACACTTAACGTATCGAGTGGGCGAAACCAAG
GTGAAACACCGGTCTTACAGCGTCATAATAAGTCTGATTTACAAAAAGAAGCCAAAAAAATAG
Gene >Pro_DTO377G3_2|g2959.t1
ATGACTCGCGGTGGAGCGGTGGATCCAATGTGCAGGTTGCTAGTTTCTACGCTGACGGGTGACAGGTATACAGCA
GTACCGTTACTGGCGTTTCAGAGAGTGGGACCCCTGTGTCGGGCTCTTTGCTGCGAGATTATTCGCACTAATAAT
CTTGTCGGAACCGGCTCTCCATGCCGGGATACACTTAACGTATCGAGTGTAAGTCTTGGCTCCATTAGGACTCAT
CTGATATACATATGATATACATATGATATACATGGTACTAATGTCTCTTAGGGGCGAAACCAAGGTGAAACACCG
GTCTTACAGCGTCATAATAAGTCTGATTTACAAAAAGAAGCCAAAAAAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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