Protein ID | Pro_DTO377G3_2|g2959.t1 |
Gene name | |
Location | scaffold_04:323300..323652 |
Strand | + |
Gene length (bp) | 352 |
Transcript length (bp) | 213 |
Coding sequence length (bp) | 213 |
Protein length (aa) | 71 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 39 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 20 | 42 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 5.87 | 0.00 | 14.51 |
5d_25C | Five days - 25 degrees Celsius | 8.67 | 0.00 | 20.17 |
7d_25C | Seven days - 25 degrees Celsius | 6.52 | 0.00 | 16.66 |
10d_25C | Ten days - 25 degrees Celsius | 11.22 | 4.51 | 17.92 |
7d_15C | Seven days - 15 degrees Celsius | 14.78 | 0.00 | 32.34 |
7d_30C | Seven days - 30 degrees Celsius | 13.05 | 0.00 | 29.14 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.712040 | no |
3d_25C | 7d_25C | 0.933752 | no |
3d_25C | 7d_15C | 0.295431 | no |
3d_25C | 7d_30C | 0.386056 | no |
3d_25C | 10d_25C | 0.489669 | no |
5d_25C | 7d_25C | 0.808338 | no |
5d_25C | 7d_15C | 0.556818 | no |
5d_25C | 7d_30C | 0.665932 | no |
5d_25C | 10d_25C | 0.801685 | no |
7d_25C | 7d_15C | 0.388651 | no |
7d_25C | 7d_30C | 0.460358 | no |
7d_25C | 10d_25C | 0.592448 | no |
7d_15C | 7d_30C | 0.916523 | no |
7d_15C | 10d_25C | 0.785379 | no |
7d_30C | 10d_25C | 0.895001 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g2959.t1 MTRGGAVDPMCREWDPCVGLFAARLFALIILSEPALHAGIHLTYRVGETKVKHRSYSVIISLIYKKKPKK* |
Coding | >Pro_DTO377G3_2|g2959.t1 ATGACTCGCGGTGGAGCGGTGGATCCAATGTGCAGAGAGTGGGACCCCTGTGTCGGGCTCTTTGCTGCGAGATTA TTCGCACTAATAATCTTGTCGGAACCGGCTCTCCATGCCGGGATACACTTAACGTATCGAGTGGGCGAAACCAAG GTGAAACACCGGTCTTACAGCGTCATAATAAGTCTGATTTACAAAAAGAAGCCAAAAAAATAG |
Transcript | >Pro_DTO377G3_2|g2959.t1 ATGACTCGCGGTGGAGCGGTGGATCCAATGTGCAGAGAGTGGGACCCCTGTGTCGGGCTCTTTGCTGCGAGATTA TTCGCACTAATAATCTTGTCGGAACCGGCTCTCCATGCCGGGATACACTTAACGTATCGAGTGGGCGAAACCAAG GTGAAACACCGGTCTTACAGCGTCATAATAAGTCTGATTTACAAAAAGAAGCCAAAAAAATAG |
Gene | >Pro_DTO377G3_2|g2959.t1 ATGACTCGCGGTGGAGCGGTGGATCCAATGTGCAGGTTGCTAGTTTCTACGCTGACGGGTGACAGGTATACAGCA GTACCGTTACTGGCGTTTCAGAGAGTGGGACCCCTGTGTCGGGCTCTTTGCTGCGAGATTATTCGCACTAATAAT CTTGTCGGAACCGGCTCTCCATGCCGGGATACACTTAACGTATCGAGTGTAAGTCTTGGCTCCATTAGGACTCAT CTGATATACATATGATATACATATGATATACATGGTACTAATGTCTCTTAGGGGCGAAACCAAGGTGAAACACCG GTCTTACAGCGTCATAATAAGTCTGATTTACAAAAAGAAGCCAAAAAAATAG |