© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2954.t1 |
| Gene name | |
| Location | scaffold_04:307251..308169 |
| Strand | + |
| Gene length (bp) | 918 |
| Transcript length (bp) | 813 |
| Coding sequence length (bp) | 813 |
| Protein length (aa) | 271 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03328 | HpcH_HpaI | HpcH/HpaI aldolase/citrate lyase family | 9.5E-35 | 19 | 245 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 11.80 | 4.06 | 19.55 |
| 5d_25C | Five days - 25 degrees Celsius | 18.07 | 7.00 | 29.13 |
| 7d_25C | Seven days - 25 degrees Celsius | 21.71 | 9.13 | 34.28 |
| 10d_25C | Ten days - 25 degrees Celsius | 28.57 | 13.12 | 44.02 |
| 7d_15C | Seven days - 15 degrees Celsius | 18.87 | 7.48 | 30.26 |
| 7d_30C | Seven days - 30 degrees Celsius | 25.71 | 11.37 | 40.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.253272 | no |
| 3d_25C | 7d_25C | 0.066653 | no |
| 3d_25C | 7d_15C | 0.195146 | no |
| 3d_25C | 7d_30C | 0.016634 | yes |
| 3d_25C | 10d_25C | 0.004450 | yes |
| 5d_25C | 7d_25C | 0.666822 | no |
| 5d_25C | 7d_15C | 0.936093 | no |
| 5d_25C | 7d_30C | 0.324608 | no |
| 5d_25C | 10d_25C | 0.159984 | no |
| 7d_25C | 7d_15C | 0.754961 | no |
| 7d_25C | 7d_30C | 0.676198 | no |
| 7d_25C | 10d_25C | 0.438271 | no |
| 7d_15C | 7d_30C | 0.397252 | no |
| 7d_15C | 10d_25C | 0.217815 | no |
| 7d_30C | 10d_25C | 0.802683 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2954.t1 MQGLNHVKTVLDNGGLALGVWQLLPGSNMSRTLARAGYDWVLVDCEHGNIDDAAMHEAVPAIVSYGVSPIVRVPD FQSWMIKRALDAGAHGVLAPLVRTVEDTKAFVEACRFPPQGKRGFGSPFPMDRFGRNVSATQYLTEANANLLLSV QIETREAFDNVDSIAAVEGLDLLFVGPFDLANGIGHPVLGSTFAPELEQAIEKVLSSAHKAGKKAGIYCGNGKQA KKYADLGYDFVNVVTDVGALTSSLASEMEIVTQKAGRTASGPYGS* |
| Coding | >Pro_DTO377G3_2|g2954.t1 ATGCAAGGTCTAAACCATGTAAAGACAGTGCTCGACAATGGCGGCCTCGCTCTGGGAGTGTGGCAGCTATTGCCC GGCAGCAACATGTCGCGCACTCTAGCACGAGCTGGATACGATTGGGTTTTGGTGGACTGTGAACATGGAAATATC GATGACGCCGCAATGCACGAAGCTGTCCCCGCCATAGTATCATATGGAGTGAGCCCGATTGTTCGCGTTCCGGAT TTCCAATCTTGGATGATTAAACGGGCTTTGGATGCAGGCGCACACGGAGTCCTCGCTCCTCTTGTACGAACAGTG GAAGACACAAAGGCCTTCGTCGAGGCCTGCCGATTCCCACCACAGGGGAAACGAGGCTTCGGGTCGCCTTTCCCG ATGGACAGGTTTGGTAGGAATGTATCAGCCACCCAGTACCTGACTGAGGCCAATGCCAATCTTCTGCTCTCAGTC CAGATTGAGACGAGAGAGGCTTTTGACAATGTCGATTCCATCGCCGCCGTTGAAGGGCTTGATCTATTGTTTGTC GGACCTTTTGACCTGGCAAATGGTATCGGCCACCCCGTACTAGGTAGTACATTTGCGCCTGAGTTGGAACAAGCC ATTGAGAAGGTTCTGTCTTCGGCGCACAAGGCAGGCAAGAAGGCTGGAATCTACTGTGGAAATGGAAAGCAGGCA AAGAAATATGCCGACTTGGGGTATGACTTTGTCAATGTTGTAACTGACGTTGGTGCTCTGACTAGCTCGCTCGCA AGTGAGATGGAGATTGTCACTCAAAAAGCAGGCAGGACTGCCTCTGGGCCTTACGGTAGCTAG |
| Transcript | >Pro_DTO377G3_2|g2954.t1 ATGCAAGGTCTAAACCATGTAAAGACAGTGCTCGACAATGGCGGCCTCGCTCTGGGAGTGTGGCAGCTATTGCCC GGCAGCAACATGTCGCGCACTCTAGCACGAGCTGGATACGATTGGGTTTTGGTGGACTGTGAACATGGAAATATC GATGACGCCGCAATGCACGAAGCTGTCCCCGCCATAGTATCATATGGAGTGAGCCCGATTGTTCGCGTTCCGGAT TTCCAATCTTGGATGATTAAACGGGCTTTGGATGCAGGCGCACACGGAGTCCTCGCTCCTCTTGTACGAACAGTG GAAGACACAAAGGCCTTCGTCGAGGCCTGCCGATTCCCACCACAGGGGAAACGAGGCTTCGGGTCGCCTTTCCCG ATGGACAGGTTTGGTAGGAATGTATCAGCCACCCAGTACCTGACTGAGGCCAATGCCAATCTTCTGCTCTCAGTC CAGATTGAGACGAGAGAGGCTTTTGACAATGTCGATTCCATCGCCGCCGTTGAAGGGCTTGATCTATTGTTTGTC GGACCTTTTGACCTGGCAAATGGTATCGGCCACCCCGTACTAGGTAGTACATTTGCGCCTGAGTTGGAACAAGCC ATTGAGAAGGTTCTGTCTTCGGCGCACAAGGCAGGCAAGAAGGCTGGAATCTACTGTGGAAATGGAAAGCAGGCA AAGAAATATGCCGACTTGGGGTATGACTTTGTCAATGTTGTAACTGACGTTGGTGCTCTGACTAGCTCGCTCGCA AGTGAGATGGAGATTGTCACTCAAAAAGCAGGCAGGACTGCCTCTGGGCCTTACGGTAGCTAG |
| Gene | >Pro_DTO377G3_2|g2954.t1 ATGCAAGGTCTAAACCATGTAAAGACAGTGCTCGACAATGGCGGCCTCGCTCTGGGAGTGTGGCAGCTATTGCCC GGCAGCAACATGTCGCGCACTCTAGCACGAGCTGGATACGATTGGGTTTTGGTGGACTGTGAACATGGAAATATC GATGGCTAGTGTTTTTGTCATTATTCGAAAGCTCATGCTAACATTCCCACAGACGCCGCAATGCACGAAGCTGTC CCCGCCATAGTATCATATGGAGTGAGCCCGATTGTTCGCGTTCCGGATTTCCAATCTTGGATGATTAAACGTATG TTAAACAGAGTATATCGCTAGCCCACTTGACAATCTCTTATCCTTTGTATAGGGGCTTTGGATGCAGGCGCACAC GGAGTCCTCGCTCCTCTTGTACGAACAGTGGAAGACACAAAGGCCTTCGTCGAGGCCTGCCGATTCCCACCACAG GGGAAACGAGGCTTCGGGTCGCCTTTCCCGATGGACAGGTTTGGTAGGAATGTATCAGCCACCCAGTACCTGACT GAGGCCAATGCCAATCTTCTGCTCTCAGTCCAGATTGAGACGAGAGAGGCTTTTGACAATGTCGATTCCATCGCC GCCGTTGAAGGGCTTGATCTATTGTTTGTCGGACCTTTTGACCTGGCAAATGGTATCGGCCACCCCGTACTAGGT AGTACATTTGCGCCTGAGTTGGAACAAGCCATTGAGAAGGTTCTGTCTTCGGCGCACAAGGCAGGCAAGAAGGCT GGAATCTACTGTGGAAATGGAAAGCAGGCAAAGAAATATGCCGACTTGGGGTATGACTTTGTCAATGTTGTAACT GACGTTGGTGCTCTGACTAGCTCGCTCGCAAGTGAGATGGAGATTGTCACTCAAAAAGCAGGCAGGACTGCCTCT GGGCCTTACGGTAGCTAG |