© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2942.t1 |
| Gene name | |
| Location | scaffold_04:280889..281666 |
| Strand | + |
| Gene length (bp) | 777 |
| Transcript length (bp) | 729 |
| Coding sequence length (bp) | 729 |
| Protein length (aa) | 243 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13419 | HAD_2 | Haloacid dehalogenase-like hydrolase | 7.4E-09 | 11 | 206 |
| PF13242 | Hydrolase_like | HAD-hyrolase-like | 2.1E-06 | 160 | 232 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 95.09 | 54.95 | 135.22 |
| 5d_25C | Five days - 25 degrees Celsius | 194.79 | 118.45 | 271.14 |
| 7d_25C | Seven days - 25 degrees Celsius | 252.77 | 153.74 | 351.80 |
| 10d_25C | Ten days - 25 degrees Celsius | 397.03 | 240.84 | 553.22 |
| 7d_15C | Seven days - 15 degrees Celsius | 180.29 | 105.92 | 254.65 |
| 7d_30C | Seven days - 30 degrees Celsius | 180.70 | 108.36 | 253.04 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.003625 | yes |
| 3d_25C | 7d_30C | 0.002761 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.257627 | no |
| 5d_25C | 7d_15C | 0.806450 | no |
| 5d_25C | 7d_30C | 0.808464 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.137528 | no |
| 7d_25C | 7d_30C | 0.134572 | no |
| 7d_25C | 10d_25C | 0.031528 | yes |
| 7d_15C | 7d_30C | 0.995455 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2942.t1 MTANTANTVVAFDLYGTLLSTQSIAKHLEKHYDNAKAQSISALWRRYQLEYTWRLNSMGRYEDFSVITRNSLLHA LADNNEQLSNDNIERLMQAYDSLSTFSDVNPALINIAADPTIQAVIFSNGTKTMVTNSVLRSKDLSPHASVCQEI VTIDEVQQYKPSKATYEHLAKQIGQDPSQMSKLWLVSGNPFDIVGARATGMQAIWVDRVGTGWKDAMAPDLQPTA IVHSLEQIVNEIHSRRL* |
| Coding | >Pro_DTO377G3_2|g2942.t1 ATGACAGCTAATACAGCCAATACAGTTGTCGCTTTTGATTTATATGGCACTTTACTCTCAACTCAATCGATCGCC AAACACTTAGAGAAACATTATGACAATGCCAAGGCGCAGTCTATCTCCGCGCTCTGGAGGCGGTATCAACTGGAG TACACATGGAGATTGAACAGCATGGGCCGCTATGAAGACTTCTCAGTCATCACTCGTAATTCCCTACTGCACGCG CTAGCCGATAACAACGAGCAGCTGAGCAACGACAACATCGAACGCTTGATGCAAGCTTACGATAGTCTCTCTACA TTTTCTGACGTGAATCCAGCTTTGATCAACATCGCTGCAGACCCAACCATCCAAGCTGTTATATTCTCCAATGGG ACGAAAACCATGGTAACCAACTCGGTGTTGCGATCAAAGGACCTTTCGCCGCACGCGAGTGTCTGTCAAGAAATC GTCACCATAGACGAAGTCCAGCAATATAAGCCATCAAAGGCAACCTACGAGCACCTAGCGAAGCAGATAGGCCAA GATCCGTCGCAGATGAGCAAACTTTGGCTGGTTAGCGGCAACCCTTTCGACATTGTCGGGGCGCGCGCTACAGGC ATGCAGGCTATATGGGTTGATCGTGTTGGTACAGGATGGAAGGACGCCATGGCTCCAGATCTACAACCAACGGCC ATTGTACACAGTCTGGAGCAAATTGTGAACGAGATTCATAGCCGTCGCCTTTAA |
| Transcript | >Pro_DTO377G3_2|g2942.t1 ATGACAGCTAATACAGCCAATACAGTTGTCGCTTTTGATTTATATGGCACTTTACTCTCAACTCAATCGATCGCC AAACACTTAGAGAAACATTATGACAATGCCAAGGCGCAGTCTATCTCCGCGCTCTGGAGGCGGTATCAACTGGAG TACACATGGAGATTGAACAGCATGGGCCGCTATGAAGACTTCTCAGTCATCACTCGTAATTCCCTACTGCACGCG CTAGCCGATAACAACGAGCAGCTGAGCAACGACAACATCGAACGCTTGATGCAAGCTTACGATAGTCTCTCTACA TTTTCTGACGTGAATCCAGCTTTGATCAACATCGCTGCAGACCCAACCATCCAAGCTGTTATATTCTCCAATGGG ACGAAAACCATGGTAACCAACTCGGTGTTGCGATCAAAGGACCTTTCGCCGCACGCGAGTGTCTGTCAAGAAATC GTCACCATAGACGAAGTCCAGCAATATAAGCCATCAAAGGCAACCTACGAGCACCTAGCGAAGCAGATAGGCCAA GATCCGTCGCAGATGAGCAAACTTTGGCTGGTTAGCGGCAACCCTTTCGACATTGTCGGGGCGCGCGCTACAGGC ATGCAGGCTATATGGGTTGATCGTGTTGGTACAGGATGGAAGGACGCCATGGCTCCAGATCTACAACCAACGGCC ATTGTACACAGTCTGGAGCAAATTGTGAACGAGATTCATAGCCGTCGCCTTTAA |
| Gene | >Pro_DTO377G3_2|g2942.t1 ATGACAGCTAATACAGCCAATACAGTTGTCGCTTTTGATTTATATGGCACTTTACTCTCAACTCAATCGATCGCC AAACACTTAGAGAAACATTATGACAATGCCAAGGCGCAGTCTATCTCCGCGCTCTGGAGGCGGTATCAACTGGAG TACACATGGAGATTGAACAGCATGGGCAAGCAACACTTCCAGGCTTGGCGCTCAAATTATTGACGATCAAAAGGC CGCTATGAAGACTTCTCAGTCATCACTCGTAATTCCCTACTGCACGCGCTAGCCGATAACAACGAGCAGCTGAGC AACGACAACATCGAACGCTTGATGCAAGCTTACGATAGTCTCTCTACATTTTCTGACGTGAATCCAGCTTTGATC AACATCGCTGCAGACCCAACCATCCAAGCTGTTATATTCTCCAATGGGACGAAAACCATGGTAACCAACTCGGTG TTGCGATCAAAGGACCTTTCGCCGCACGCGAGTGTCTGTCAAGAAATCGTCACCATAGACGAAGTCCAGCAATAT AAGCCATCAAAGGCAACCTACGAGCACCTAGCGAAGCAGATAGGCCAAGATCCGTCGCAGATGAGCAAACTTTGG CTGGTTAGCGGCAACCCTTTCGACATTGTCGGGGCGCGCGCTACAGGCATGCAGGCTATATGGGTTGATCGTGTT GGTACAGGATGGAAGGACGCCATGGCTCCAGATCTACAACCAACGGCCATTGTACACAGTCTGGAGCAAATTGTG AACGAGATTCATAGCCGTCGCCTTTAA |