Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2940.t1
Gene name
Locationscaffold_04:277683..279510
Strand+
Gene length (bp)1827
Transcript length (bp)1770
Coding sequence length (bp)1770
Protein length (aa) 590

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 5.55 1.97 9.13
5d_25C Five days - 25 degrees Celsius 2.88 0.65 5.11
7d_25C Seven days - 25 degrees Celsius 1.44 0.11 2.76
10d_25C Ten days - 25 degrees Celsius 1.19 0.03 2.35
7d_15C Seven days - 15 degrees Celsius 7.07 2.35 11.80
7d_30C Seven days - 30 degrees Celsius 2.97 0.62 5.32

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.105018 no
3d_25C 7d_25C 0.003625 yes
3d_25C 7d_15C 0.590460 no
3d_25C 7d_30C 0.129952 no
3d_25C 10d_25C 0.001278 yes
5d_25C 7d_25C 0.168208 no
5d_25C 7d_15C 0.021417 yes
5d_25C 7d_30C 0.967406 no
5d_25C 10d_25C 0.074263 no
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.144882 no
7d_25C 10d_25C 0.801587 no
7d_15C 7d_30C 0.030646 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.066303 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2940.t1
MLRFQFFLFLLLPWMASAGPISRWLSRSLEASSPTYFPLLPDIERRQAGGITAITPVAAPTQQSFTYDEPIPTTY
HASSTTHNTTTSQRPTTQQPTPQQPTTTHSTTTSQKPTMQQPTTTQEPTTTQEPTTTQESTTTQEPTTTQEPTTT
HKPVITSHVSTTTRRFISSSTNPGMLLSSTITSVLPAYIPGSTSSLDSLVVPSSAQSSSATLLGGTTSIKATTAT
SPISTSTTIHPTISPVPTVPTSRSPTVGVILPLGGASSSNYSTFTPVVSTSDSIQPAKATQASIQLLTSESKPVV
TVTEPVIVYVTQGAPAPFSTSVIHHAPSVNSSSVSLANSTSVEPTTTSLTFVTIHSTATSVVRVTVYPTSSPSSA
SSLSVSTGSTSSVNATPVVPMTGDSTTLSLPSSSSLLSSSSSEIASVVTAHVTSTSVVPLTVHPTTSLPVSSLLP
SSSENASIVTIRVTSTSVVSVTVYSTTSPSAPLLPSLSETALRETAPVVTAHVTSTKTIRVTLYGTATRAAKTTH
TADPTSTVDANIATTTSKAGQGILTVNPVTPPGFITITETETETKTKTVTDRITETVTATVTRN*
Coding >Pro_DTO377G3_2|g2940.t1
ATGCTTCGCTTTCAGTTCTTTTTGTTCCTTCTTCTGCCGTGGATGGCTTCGGCTGGTCCGATCTCTCGCTGGTTG
TCTCGGTCATTGGAGGCATCTTCGCCGACTTATTTCCCCTTATTGCCGGATATCGAACGGCGTCAAGCTGGCGGT
ATCACCGCAATCACGCCTGTGGCAGCACCTACCCAGCAATCGTTTACGTACGACGAGCCAATACCAACTACATAC
CATGCGTCATCCACAACTCATAACACAACCACCAGCCAGAGGCCAACTACGCAGCAGCCAACTCCACAGCAACCA
ACCACGACTCATAGTACAACTACTAGTCAGAAGCCAACTATGCAGCAACCAACTACAACTCAAGAGCCAACTACA
ACTCAGGAGCCAACTACAACTCAGGAGTCAACTACAACTCAGGAGCCAACTACAACTCAGGAGCCAACTACAACC
CATAAGCCAGTCATCACCTCTCATGTGTCCACTACCACTCGGCGATTCATATCCTCATCCACAAACCCGGGAATG
CTGCTTTCATCAACAATAACTAGCGTATTACCTGCGTATATTCCAGGCTCAACATCCTCTCTCGATTCTTTGGTG
GTGCCGAGTTCAGCCCAATCTTCATCGGCTACGCTTCTAGGTGGAACAACCAGCATCAAAGCTACCACAGCCACA
TCGCCAATATCGACCTCTACGACCATACACCCAACAATATCACCGGTGCCCACAGTGCCCACAAGTCGTAGCCCA
ACGGTCGGAGTCATTCTACCTCTAGGAGGAGCAAGCAGCAGCAATTATTCCACGTTCACACCGGTGGTATCAACC
TCCGATTCCATCCAACCAGCAAAGGCTACGCAGGCATCCATACAGCTTCTTACCTCAGAATCCAAGCCAGTGGTG
ACCGTAACCGAGCCTGTGATCGTATATGTGACTCAAGGAGCGCCAGCTCCCTTCTCGACAAGTGTCATCCATCAC
GCACCTAGTGTCAATAGTTCATCGGTATCATTGGCAAATTCAACGTCTGTTGAACCAACAACTACATCTTTGACG
TTTGTGACCATCCATTCCACTGCAACATCGGTTGTTCGTGTCACTGTTTACCCAACATCATCACCATCATCTGCT
TCTTCGCTTTCGGTCTCAACCGGGAGCACTTCGAGTGTGAATGCAACGCCAGTTGTTCCTATGACCGGTGACTCG
ACAACACTTTCGCTTCCTTCATCGTCTTCGTTGTTGTCGTCCTCCTCGAGTGAGATTGCTTCTGTGGTAACAGCT
CACGTCACTTCCACGAGTGTTGTTCCTCTGACTGTTCACCCAACTACGTCGTTGCCTGTATCTTCGTTGTTGCCG
TCCTCAAGTGAGAATGCTTCTATAGTGACAATCCGTGTCACTTCCACAAGTGTTGTATCAGTGACCGTTTACTCG
ACAACATCGCCATCTGCTCCATTGTTGCCGTCTTTAAGTGAGACTGCTCTGCGTGAGACTGCCCCTGTTGTGACA
GCTCATGTCACTTCCACAAAAACAATTCGCGTGACCTTGTATGGTACTGCTACCCGAGCAGCGAAAACTACACAT
ACAGCAGATCCCACATCTACTGTGGATGCCAATATCGCTACCACAACCTCTAAGGCAGGCCAAGGCATACTTACT
GTGAATCCGGTTACGCCGCCTGGCTTTATCACGATCACTGAGACTGAGACGGAGACAAAGACTAAGACAGTGACA
GATCGCATTACTGAGACTGTTACTGCCACCGTCACTCGGAATTAA
Transcript >Pro_DTO377G3_2|g2940.t1
ATGCTTCGCTTTCAGTTCTTTTTGTTCCTTCTTCTGCCGTGGATGGCTTCGGCTGGTCCGATCTCTCGCTGGTTG
TCTCGGTCATTGGAGGCATCTTCGCCGACTTATTTCCCCTTATTGCCGGATATCGAACGGCGTCAAGCTGGCGGT
ATCACCGCAATCACGCCTGTGGCAGCACCTACCCAGCAATCGTTTACGTACGACGAGCCAATACCAACTACATAC
CATGCGTCATCCACAACTCATAACACAACCACCAGCCAGAGGCCAACTACGCAGCAGCCAACTCCACAGCAACCA
ACCACGACTCATAGTACAACTACTAGTCAGAAGCCAACTATGCAGCAACCAACTACAACTCAAGAGCCAACTACA
ACTCAGGAGCCAACTACAACTCAGGAGTCAACTACAACTCAGGAGCCAACTACAACTCAGGAGCCAACTACAACC
CATAAGCCAGTCATCACCTCTCATGTGTCCACTACCACTCGGCGATTCATATCCTCATCCACAAACCCGGGAATG
CTGCTTTCATCAACAATAACTAGCGTATTACCTGCGTATATTCCAGGCTCAACATCCTCTCTCGATTCTTTGGTG
GTGCCGAGTTCAGCCCAATCTTCATCGGCTACGCTTCTAGGTGGAACAACCAGCATCAAAGCTACCACAGCCACA
TCGCCAATATCGACCTCTACGACCATACACCCAACAATATCACCGGTGCCCACAGTGCCCACAAGTCGTAGCCCA
ACGGTCGGAGTCATTCTACCTCTAGGAGGAGCAAGCAGCAGCAATTATTCCACGTTCACACCGGTGGTATCAACC
TCCGATTCCATCCAACCAGCAAAGGCTACGCAGGCATCCATACAGCTTCTTACCTCAGAATCCAAGCCAGTGGTG
ACCGTAACCGAGCCTGTGATCGTATATGTGACTCAAGGAGCGCCAGCTCCCTTCTCGACAAGTGTCATCCATCAC
GCACCTAGTGTCAATAGTTCATCGGTATCATTGGCAAATTCAACGTCTGTTGAACCAACAACTACATCTTTGACG
TTTGTGACCATCCATTCCACTGCAACATCGGTTGTTCGTGTCACTGTTTACCCAACATCATCACCATCATCTGCT
TCTTCGCTTTCGGTCTCAACCGGGAGCACTTCGAGTGTGAATGCAACGCCAGTTGTTCCTATGACCGGTGACTCG
ACAACACTTTCGCTTCCTTCATCGTCTTCGTTGTTGTCGTCCTCCTCGAGTGAGATTGCTTCTGTGGTAACAGCT
CACGTCACTTCCACGAGTGTTGTTCCTCTGACTGTTCACCCAACTACGTCGTTGCCTGTATCTTCGTTGTTGCCG
TCCTCAAGTGAGAATGCTTCTATAGTGACAATCCGTGTCACTTCCACAAGTGTTGTATCAGTGACCGTTTACTCG
ACAACATCGCCATCTGCTCCATTGTTGCCGTCTTTAAGTGAGACTGCTCTGCGTGAGACTGCCCCTGTTGTGACA
GCTCATGTCACTTCCACAAAAACAATTCGCGTGACCTTGTATGGTACTGCTACCCGAGCAGCGAAAACTACACAT
ACAGCAGATCCCACATCTACTGTGGATGCCAATATCGCTACCACAACCTCTAAGGCAGGCCAAGGCATACTTACT
GTGAATCCGGTTACGCCGCCTGGCTTTATCACGATCACTGAGACTGAGACGGAGACAAAGACTAAGACAGTGACA
GATCGCATTACTGAGACTGTTACTGCCACCGTCACTCGGAATTAA
Gene >Pro_DTO377G3_2|g2940.t1
ATGCTTCGCTTTCAGTTCTTTTTGTTCCTTCTTCTGCCGTGGATGGCTTCGGCTGGTCCGATCTCTCGCTGGTTG
TCTCGGTCATTGGAGGCATCTTCGCCGACTTATTTCCCCTTATTGCCGGATATCGAACGGCGTCAAGCTGGCGGT
ATCACCGCAATCACGCCTGTGGCAGCACCTACCCAGCAATCGTTTACGTACGACGAGCCAATAGTACTTACCCTT
TTCTAAACCATTAAGTCAACCACCTAGCTAACCATCACTTCAAAGCCAACTACATACCATGCGTCATCCACAACT
CATAACACAACCACCAGCCAGAGGCCAACTACGCAGCAGCCAACTCCACAGCAACCAACCACGACTCATAGTACA
ACTACTAGTCAGAAGCCAACTATGCAGCAACCAACTACAACTCAAGAGCCAACTACAACTCAGGAGCCAACTACA
ACTCAGGAGTCAACTACAACTCAGGAGCCAACTACAACTCAGGAGCCAACTACAACCCATAAGCCAGTCATCACC
TCTCATGTGTCCACTACCACTCGGCGATTCATATCCTCATCCACAAACCCGGGAATGCTGCTTTCATCAACAATA
ACTAGCGTATTACCTGCGTATATTCCAGGCTCAACATCCTCTCTCGATTCTTTGGTGGTGCCGAGTTCAGCCCAA
TCTTCATCGGCTACGCTTCTAGGTGGAACAACCAGCATCAAAGCTACCACAGCCACATCGCCAATATCGACCTCT
ACGACCATACACCCAACAATATCACCGGTGCCCACAGTGCCCACAAGTCGTAGCCCAACGGTCGGAGTCATTCTA
CCTCTAGGAGGAGCAAGCAGCAGCAATTATTCCACGTTCACACCGGTGGTATCAACCTCCGATTCCATCCAACCA
GCAAAGGCTACGCAGGCATCCATACAGCTTCTTACCTCAGAATCCAAGCCAGTGGTGACCGTAACCGAGCCTGTG
ATCGTATATGTGACTCAAGGAGCGCCAGCTCCCTTCTCGACAAGTGTCATCCATCACGCACCTAGTGTCAATAGT
TCATCGGTATCATTGGCAAATTCAACGTCTGTTGAACCAACAACTACATCTTTGACGTTTGTGACCATCCATTCC
ACTGCAACATCGGTTGTTCGTGTCACTGTTTACCCAACATCATCACCATCATCTGCTTCTTCGCTTTCGGTCTCA
ACCGGGAGCACTTCGAGTGTGAATGCAACGCCAGTTGTTCCTATGACCGGTGACTCGACAACACTTTCGCTTCCT
TCATCGTCTTCGTTGTTGTCGTCCTCCTCGAGTGAGATTGCTTCTGTGGTAACAGCTCACGTCACTTCCACGAGT
GTTGTTCCTCTGACTGTTCACCCAACTACGTCGTTGCCTGTATCTTCGTTGTTGCCGTCCTCAAGTGAGAATGCT
TCTATAGTGACAATCCGTGTCACTTCCACAAGTGTTGTATCAGTGACCGTTTACTCGACAACATCGCCATCTGCT
CCATTGTTGCCGTCTTTAAGTGAGACTGCTCTGCGTGAGACTGCCCCTGTTGTGACAGCTCATGTCACTTCCACA
AAAACAATTCGCGTGACCTTGTATGGTACTGCTACCCGAGCAGCGAAAACTACACATACAGCAGATCCCACATCT
ACTGTGGATGCCAATATCGCTACCACAACCTCTAAGGCAGGCCAAGGCATACTTACTGTGAATCCGGTTACGCCG
CCTGGCTTTATCACGATCACTGAGACTGAGACGGAGACAAAGACTAAGACAGTGACAGATCGCATTACTGAGACT
GTTACTGCCACCGTCACTCGGAATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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