© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2937.t1 |
| Gene name | |
| Location | scaffold_04:270875..272389 |
| Strand | + |
| Gene length (bp) | 1514 |
| Transcript length (bp) | 1458 |
| Coding sequence length (bp) | 1458 |
| Protein length (aa) | 486 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 4.1E-27 | 71 | 354 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 3.1E-14 | 71 | 282 |
| PF07993 | NAD_binding_4 | Male sterility protein | 3.9E-09 | 138 | 267 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0009058 | biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 23 | 19 |
| 2 | 70 | 89 | 19 |
| Orthofinder run ID | 2 |
| Orthogroup | 2194 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2937.t1 MTSLIVASLAVLGALYMWRVNSAMKVVPEEARKLSPHRWTVEEIKAAYKKSLENPIDVTKSLPPKQSRRYVIVGG TGLVGAWIVSHLLARGEDHKAIRILDLISPEQDILNKGVGWIKTDITDELAVTTAFEEPWAANVTNLALTVYHTA AIIRPQDRLKSFLPLSSKVNIDGTQNVLNAARAAGATAFIWTSSGSVALHRPTFWIAPWATQPKRVVQVIGDSTK LPGSHYQFFSNYAVTKTEAESLVRAADNPATNFRTGCIRPTNGVYGTGGQANNVITGLYLRNGGSPTWARPILQS FVHAENVSIAHLLYEQRLIQQSEPGSQLPNTGGQAFTVSDPNPAIAFNDLYTLLTTLSKTPLSFPEVQPLPLLVM AYFIEMYTFLQFRYLSWLPRLSGDIGQLQPSLFSIINVHVFADDSRAKLAPEMGGLGYNPPLNTLEGLCRRLVDW NTKAEREGVEVMGKKIRLGPVQVSGDGVNVVAPVL* |
| Coding | >Pro_DTO377G3_2|g2937.t1 ATGACGTCGCTCATAGTAGCTAGCCTGGCTGTACTAGGTGCTCTTTATATGTGGCGTGTCAACTCTGCTATGAAA GTAGTCCCCGAAGAGGCACGGAAACTATCACCTCATCGTTGGACAGTCGAAGAAATCAAAGCAGCTTACAAAAAG AGCCTAGAAAACCCTATCGATGTGACTAAGAGCCTGCCACCAAAACAATCCCGACGATATGTGATCGTAGGCGGA ACTGGCCTAGTTGGTGCTTGGATAGTCTCACATCTTCTCGCACGGGGCGAAGACCACAAGGCAATTCGCATTCTA GACCTAATATCTCCAGAGCAGGACATCCTCAACAAAGGCGTGGGCTGGATCAAAACCGATATCACCGACGAGCTC GCAGTAACAACAGCATTCGAAGAGCCATGGGCTGCCAATGTCACCAACCTTGCCCTAACAGTCTACCACACCGCA GCCATAATCCGACCACAGGACCGACTCAAGAGCTTCCTACCACTTAGCAGCAAAGTCAACATCGACGGCACACAG AATGTCCTGAACGCCGCAAGAGCCGCCGGCGCCACAGCCTTCATCTGGACATCCTCAGGCTCCGTGGCCCTGCAC CGACCAACCTTCTGGATCGCGCCGTGGGCGACCCAGCCTAAGCGCGTAGTCCAAGTAATCGGCGACAGCACCAAA CTGCCCGGATCTCACTACCAATTCTTCAGCAACTACGCCGTAACCAAAACCGAAGCAGAGAGCCTCGTCCGCGCA GCAGATAACCCAGCAACAAACTTCCGCACCGGCTGCATCCGCCCCACGAACGGTGTCTATGGCACAGGCGGCCAA GCCAACAATGTCATCACGGGACTTTACCTCCGCAACGGTGGCAGTCCGACCTGGGCTCGCCCAATCCTGCAGAGT TTTGTGCACGCTGAAAACGTCTCGATCGCACACCTCTTGTACGAACAGCGTCTGATCCAGCAGAGCGAGCCTGGT TCGCAGCTCCCAAATACAGGCGGCCAGGCGTTCACCGTTAGCGACCCCAACCCGGCGATTGCATTTAATGATTTG TACACGCTACTCACGACGTTGTCCAAAACGCCGCTTTCATTCCCGGAGGTGCAGCCCTTGCCGTTGTTGGTGATG GCGTATTTTATTGAGATGTATACTTTCTTGCAGTTTAGATATCTCTCTTGGTTGCCGAGGTTGTCAGGGGATATT GGGCAACTTCAGCCGTCGCTGTTTTCCATTATCAATGTTCATGTGTTTGCTGATGATTCGCGCGCGAAGCTGGCA CCTGAGATGGGTGGGTTAGGGTATAACCCGCCTCTAAACACACTCGAAGGTCTGTGTCGGCGCCTTGTGGATTGG AATACGAAGGCCGAAAGAGAGGGGGTTGAGGTCATGGGGAAGAAGATACGGTTGGGCCCTGTGCAGGTTTCGGGA GATGGTGTCAATGTGGTCGCCCCGGTGTTGTGA |
| Transcript | >Pro_DTO377G3_2|g2937.t1 ATGACGTCGCTCATAGTAGCTAGCCTGGCTGTACTAGGTGCTCTTTATATGTGGCGTGTCAACTCTGCTATGAAA GTAGTCCCCGAAGAGGCACGGAAACTATCACCTCATCGTTGGACAGTCGAAGAAATCAAAGCAGCTTACAAAAAG AGCCTAGAAAACCCTATCGATGTGACTAAGAGCCTGCCACCAAAACAATCCCGACGATATGTGATCGTAGGCGGA ACTGGCCTAGTTGGTGCTTGGATAGTCTCACATCTTCTCGCACGGGGCGAAGACCACAAGGCAATTCGCATTCTA GACCTAATATCTCCAGAGCAGGACATCCTCAACAAAGGCGTGGGCTGGATCAAAACCGATATCACCGACGAGCTC GCAGTAACAACAGCATTCGAAGAGCCATGGGCTGCCAATGTCACCAACCTTGCCCTAACAGTCTACCACACCGCA GCCATAATCCGACCACAGGACCGACTCAAGAGCTTCCTACCACTTAGCAGCAAAGTCAACATCGACGGCACACAG AATGTCCTGAACGCCGCAAGAGCCGCCGGCGCCACAGCCTTCATCTGGACATCCTCAGGCTCCGTGGCCCTGCAC CGACCAACCTTCTGGATCGCGCCGTGGGCGACCCAGCCTAAGCGCGTAGTCCAAGTAATCGGCGACAGCACCAAA CTGCCCGGATCTCACTACCAATTCTTCAGCAACTACGCCGTAACCAAAACCGAAGCAGAGAGCCTCGTCCGCGCA GCAGATAACCCAGCAACAAACTTCCGCACCGGCTGCATCCGCCCCACGAACGGTGTCTATGGCACAGGCGGCCAA GCCAACAATGTCATCACGGGACTTTACCTCCGCAACGGTGGCAGTCCGACCTGGGCTCGCCCAATCCTGCAGAGT TTTGTGCACGCTGAAAACGTCTCGATCGCACACCTCTTGTACGAACAGCGTCTGATCCAGCAGAGCGAGCCTGGT TCGCAGCTCCCAAATACAGGCGGCCAGGCGTTCACCGTTAGCGACCCCAACCCGGCGATTGCATTTAATGATTTG TACACGCTACTCACGACGTTGTCCAAAACGCCGCTTTCATTCCCGGAGGTGCAGCCCTTGCCGTTGTTGGTGATG GCGTATTTTATTGAGATGTATACTTTCTTGCAGTTTAGATATCTCTCTTGGTTGCCGAGGTTGTCAGGGGATATT GGGCAACTTCAGCCGTCGCTGTTTTCCATTATCAATGTTCATGTGTTTGCTGATGATTCGCGCGCGAAGCTGGCA CCTGAGATGGGTGGGTTAGGGTATAACCCGCCTCTAAACACACTCGAAGGTCTGTGTCGGCGCCTTGTGGATTGG AATACGAAGGCCGAAAGAGAGGGGGTTGAGGTCATGGGGAAGAAGATACGGTTGGGCCCTGTGCAGGTTTCGGGA GATGGTGTCAATGTGGTCGCCCCGGTGTTGTGA |
| Gene | >Pro_DTO377G3_2|g2937.t1 ATGACGTCGCTCATAGTAGCTAGCCTGGCTGTACTAGGTGCTCTTTATATGTGGCGTGTCAACTCTGCTATGAAA GTAGTCCCCGAAGAGGCACGGAAACTATCACCTCATCGTTGGACAGTCGAAGAAATCAAAGCAGCTTACAAAAAG AGCCTAGAAAACCCTATCGATGTGACTAAGAGCCTGCCACCAAAACAATCCCGACGATATGTGATCGTAGGCGGA ACTGGTAAGTATACATATAGATCGCTTTTCGATTTCATTTACTGACTTTCCGAACTACAGGCCTAGTTGGTGCTT GGATAGTCTCACATCTTCTCGCACGGGGCGAAGACCACAAGGCAATTCGCATTCTAGACCTAATATCTCCAGAGC AGGACATCCTCAACAAAGGCGTGGGCTGGATCAAAACCGATATCACCGACGAGCTCGCAGTAACAACAGCATTCG AAGAGCCATGGGCTGCCAATGTCACCAACCTTGCCCTAACAGTCTACCACACCGCAGCCATAATCCGACCACAGG ACCGACTCAAGAGCTTCCTACCACTTAGCAGCAAAGTCAACATCGACGGCACACAGAATGTCCTGAACGCCGCAA GAGCCGCCGGCGCCACAGCCTTCATCTGGACATCCTCAGGCTCCGTGGCCCTGCACCGACCAACCTTCTGGATCG CGCCGTGGGCGACCCAGCCTAAGCGCGTAGTCCAAGTAATCGGCGACAGCACCAAACTGCCCGGATCTCACTACC AATTCTTCAGCAACTACGCCGTAACCAAAACCGAAGCAGAGAGCCTCGTCCGCGCAGCAGATAACCCAGCAACAA ACTTCCGCACCGGCTGCATCCGCCCCACGAACGGTGTCTATGGCACAGGCGGCCAAGCCAACAATGTCATCACGG GACTTTACCTCCGCAACGGTGGCAGTCCGACCTGGGCTCGCCCAATCCTGCAGAGTTTTGTGCACGCTGAAAACG TCTCGATCGCACACCTCTTGTACGAACAGCGTCTGATCCAGCAGAGCGAGCCTGGTTCGCAGCTCCCAAATACAG GCGGCCAGGCGTTCACCGTTAGCGACCCCAACCCGGCGATTGCATTTAATGATTTGTACACGCTACTCACGACGT TGTCCAAAACGCCGCTTTCATTCCCGGAGGTGCAGCCCTTGCCGTTGTTGGTGATGGCGTATTTTATTGAGATGT ATACTTTCTTGCAGTTTAGATATCTCTCTTGGTTGCCGAGGTTGTCAGGGGATATTGGGCAACTTCAGCCGTCGC TGTTTTCCATTATCAATGTTCATGTGTTTGCTGATGATTCGCGCGCGAAGCTGGCACCTGAGATGGGTGGGTTAG GGTATAACCCGCCTCTAAACACACTCGAAGGTCTGTGTCGGCGCCTTGTGGATTGGAATACGAAGGCCGAAAGAG AGGGGGTTGAGGTCATGGGGAAGAAGATACGGTTGGGCCCTGTGCAGGTTTCGGGAGATGGTGTCAATGTGGTCG CCCCGGTGTTGTGA |