Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2919.t1
Gene name
Locationscaffold_04:225454..226987
Strand-
Gene length (bp)1533
Transcript length (bp)1533
Coding sequence length (bp)1533
Protein length (aa) 511

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00628 PHD PHD-finger 1.3E-08 130 183

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 70 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 13.63 6.36 20.90
5d_25C Five days - 25 degrees Celsius 8.90 3.62 14.17
7d_25C Seven days - 25 degrees Celsius 7.01 2.51 11.52
10d_25C Ten days - 25 degrees Celsius 3.59 0.99 6.19
7d_15C Seven days - 15 degrees Celsius 10.43 4.50 16.36
7d_30C Seven days - 30 degrees Celsius 6.44 2.32 10.56

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.183464 no
3d_25C 7d_25C 0.041989 yes
3d_25C 7d_15C 0.451543 no
3d_25C 7d_30C 0.019624 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.561352 no
5d_25C 7d_15C 0.695476 no
5d_25C 7d_30C 0.398433 no
5d_25C 10d_25C 0.013513 yes
7d_25C 7d_15C 0.271392 no
7d_25C 7d_30C 0.873276 no
7d_25C 10d_25C 0.086529 no
7d_15C 7d_30C 0.161948 no
7d_15C 10d_25C 0.004450 yes
7d_30C 10d_25C 0.138010 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2919.t1
MRVSSEFMDLPAPDINPERPQNVYEGNIFDHESVSEAIQPLSSHPELMADNLSWGIWGSPAPPQEEAVWTTAGAT
ETDRNASTALDSNRTRSGRRITQPTVRQAEPVTIKGPVKVAAKKRKRPNRQVNIVCTACYRGHSPSNNLIVLCDS
CDAPWHQKCHSPNIHNEVIEISEMNWFCIKCKPEQRQAAQTKYQKNGATKLKKVERPKKQPVSEPQIGGNYYPEE
ERRAYLSSLSHDSLVKLIVRVSNEWPSVPMFPRDMQPVTDFTLSPSATPHNNRVSKPTLKENVRSALLDWENQEP
SFKNASDMGLNQQIGKNSNTAAPNATSMNPEELFAAMVSDTAPNPASPAALGGIAAGQVSTGIPHTHASTTAPQT
TTTTSQTPSRATRRFTSHAAPAGARARKASFVSSNSDLLTDDESSYSQSPTPSPSQSSQVGSQHESDYDPGDYRA
YPEAGQGFQVPSTPSDLDIMAEDKNCLTFSHSIRGSAKQAQNKKPSSAYAVVIDPDLVLV*
Coding >Pro_DTO377G3_2|g2919.t1
ATGAGGGTCTCATCGGAATTCATGGACCTCCCTGCTCCCGATATCAATCCGGAGCGCCCCCAAAACGTCTATGAG
GGCAACATATTTGACCATGAAAGCGTCTCCGAGGCGATCCAACCACTGTCATCACACCCGGAACTTATGGCTGAC
AATTTATCCTGGGGAATTTGGGGATCACCAGCACCGCCTCAGGAAGAGGCCGTTTGGACAACAGCTGGGGCTACG
GAAACGGATAGAAATGCCAGCACTGCCCTAGATTCAAATCGAACTCGATCTGGCCGCCGTATTACTCAACCAACT
GTTCGACAAGCTGAGCCTGTGACAATCAAAGGGCCTGTCAAAGTGGCAGCTAAAAAGCGGAAGCGTCCGAACCGC
CAGGTCAATATAGTTTGTACCGCCTGTTACAGAGGACACAGCCCCTCGAACAATTTGATTGTTCTATGTGACTCA
TGTGATGCTCCGTGGCATCAGAAATGCCACAGTCCAAACATTCATAATGAGGTTATCGAAATTTCGGAGATGAAT
TGGTTTTGCATCAAGTGTAAACCTGAGCAACGTCAGGCAGCCCAGACCAAATATCAAAAGAATGGTGCAACGAAA
TTGAAAAAAGTCGAACGACCGAAGAAGCAGCCTGTGTCTGAACCTCAAATTGGTGGAAATTATTATCCAGAGGAG
GAACGACGGGCGTATCTGTCATCTCTTTCGCATGATTCGCTAGTCAAGCTTATAGTGAGAGTCTCAAACGAGTGG
CCGTCGGTTCCTATGTTTCCCCGGGACATGCAACCCGTGACAGATTTCACTCTGTCACCTTCTGCGACACCACAC
AATAATCGGGTTTCCAAACCTACACTGAAGGAAAACGTTCGTTCTGCATTACTTGATTGGGAAAATCAGGAACCA
TCATTCAAGAACGCTAGCGACATGGGTTTAAACCAACAGATCGGCAAGAATTCTAATACCGCAGCCCCCAATGCT
ACTTCCATGAATCCCGAAGAACTCTTTGCTGCAATGGTTTCCGATACGGCTCCCAATCCTGCTTCCCCGGCGGCT
CTTGGTGGCATCGCTGCGGGCCAGGTTTCCACCGGAATTCCTCACACGCATGCTTCCACAACTGCTCCCCAGACT
ACAACAACAACTTCCCAGACGCCTTCCAGAGCCACGCGCAGATTTACATCGCATGCTGCGCCTGCAGGTGCACGT
GCTCGCAAGGCCTCTTTCGTTTCTTCGAACTCTGACCTGCTCACCGACGACGAGTCATCATACTCCCAATCCCCC
ACTCCGTCTCCATCTCAGTCCTCACAAGTTGGATCCCAGCATGAATCGGATTATGACCCTGGAGATTACCGCGCC
TACCCCGAAGCTGGTCAAGGCTTCCAGGTGCCGTCGACCCCGAGCGATCTTGACATCATGGCTGAGGATAAGAAT
TGCCTTACCTTCAGTCATTCTATCCGGGGCTCAGCGAAGCAGGCTCAGAATAAGAAGCCTTCTTCGGCGTATGCA
GTGGTGATTGATCCCGATCTTGTTCTGGTTTAA
Transcript >Pro_DTO377G3_2|g2919.t1
ATGAGGGTCTCATCGGAATTCATGGACCTCCCTGCTCCCGATATCAATCCGGAGCGCCCCCAAAACGTCTATGAG
GGCAACATATTTGACCATGAAAGCGTCTCCGAGGCGATCCAACCACTGTCATCACACCCGGAACTTATGGCTGAC
AATTTATCCTGGGGAATTTGGGGATCACCAGCACCGCCTCAGGAAGAGGCCGTTTGGACAACAGCTGGGGCTACG
GAAACGGATAGAAATGCCAGCACTGCCCTAGATTCAAATCGAACTCGATCTGGCCGCCGTATTACTCAACCAACT
GTTCGACAAGCTGAGCCTGTGACAATCAAAGGGCCTGTCAAAGTGGCAGCTAAAAAGCGGAAGCGTCCGAACCGC
CAGGTCAATATAGTTTGTACCGCCTGTTACAGAGGACACAGCCCCTCGAACAATTTGATTGTTCTATGTGACTCA
TGTGATGCTCCGTGGCATCAGAAATGCCACAGTCCAAACATTCATAATGAGGTTATCGAAATTTCGGAGATGAAT
TGGTTTTGCATCAAGTGTAAACCTGAGCAACGTCAGGCAGCCCAGACCAAATATCAAAAGAATGGTGCAACGAAA
TTGAAAAAAGTCGAACGACCGAAGAAGCAGCCTGTGTCTGAACCTCAAATTGGTGGAAATTATTATCCAGAGGAG
GAACGACGGGCGTATCTGTCATCTCTTTCGCATGATTCGCTAGTCAAGCTTATAGTGAGAGTCTCAAACGAGTGG
CCGTCGGTTCCTATGTTTCCCCGGGACATGCAACCCGTGACAGATTTCACTCTGTCACCTTCTGCGACACCACAC
AATAATCGGGTTTCCAAACCTACACTGAAGGAAAACGTTCGTTCTGCATTACTTGATTGGGAAAATCAGGAACCA
TCATTCAAGAACGCTAGCGACATGGGTTTAAACCAACAGATCGGCAAGAATTCTAATACCGCAGCCCCCAATGCT
ACTTCCATGAATCCCGAAGAACTCTTTGCTGCAATGGTTTCCGATACGGCTCCCAATCCTGCTTCCCCGGCGGCT
CTTGGTGGCATCGCTGCGGGCCAGGTTTCCACCGGAATTCCTCACACGCATGCTTCCACAACTGCTCCCCAGACT
ACAACAACAACTTCCCAGACGCCTTCCAGAGCCACGCGCAGATTTACATCGCATGCTGCGCCTGCAGGTGCACGT
GCTCGCAAGGCCTCTTTCGTTTCTTCGAACTCTGACCTGCTCACCGACGACGAGTCATCATACTCCCAATCCCCC
ACTCCGTCTCCATCTCAGTCCTCACAAGTTGGATCCCAGCATGAATCGGATTATGACCCTGGAGATTACCGCGCC
TACCCCGAAGCTGGTCAAGGCTTCCAGGTGCCGTCGACCCCGAGCGATCTTGACATCATGGCTGAGGATAAGAAT
TGCCTTACCTTCAGTCATTCTATCCGGGGCTCAGCGAAGCAGGCTCAGAATAAGAAGCCTTCTTCGGCGTATGCA
GTGGTGATTGATCCCGATCTTGTTCTGGTTTAA
Gene >Pro_DTO377G3_2|g2919.t1
ATGAGGGTCTCATCGGAATTCATGGACCTCCCTGCTCCCGATATCAATCCGGAGCGCCCCCAAAACGTCTATGAG
GGCAACATATTTGACCATGAAAGCGTCTCCGAGGCGATCCAACCACTGTCATCACACCCGGAACTTATGGCTGAC
AATTTATCCTGGGGAATTTGGGGATCACCAGCACCGCCTCAGGAAGAGGCCGTTTGGACAACAGCTGGGGCTACG
GAAACGGATAGAAATGCCAGCACTGCCCTAGATTCAAATCGAACTCGATCTGGCCGCCGTATTACTCAACCAACT
GTTCGACAAGCTGAGCCTGTGACAATCAAAGGGCCTGTCAAAGTGGCAGCTAAAAAGCGGAAGCGTCCGAACCGC
CAGGTCAATATAGTTTGTACCGCCTGTTACAGAGGACACAGCCCCTCGAACAATTTGATTGTTCTATGTGACTCA
TGTGATGCTCCGTGGCATCAGAAATGCCACAGTCCAAACATTCATAATGAGGTTATCGAAATTTCGGAGATGAAT
TGGTTTTGCATCAAGTGTAAACCTGAGCAACGTCAGGCAGCCCAGACCAAATATCAAAAGAATGGTGCAACGAAA
TTGAAAAAAGTCGAACGACCGAAGAAGCAGCCTGTGTCTGAACCTCAAATTGGTGGAAATTATTATCCAGAGGAG
GAACGACGGGCGTATCTGTCATCTCTTTCGCATGATTCGCTAGTCAAGCTTATAGTGAGAGTCTCAAACGAGTGG
CCGTCGGTTCCTATGTTTCCCCGGGACATGCAACCCGTGACAGATTTCACTCTGTCACCTTCTGCGACACCACAC
AATAATCGGGTTTCCAAACCTACACTGAAGGAAAACGTTCGTTCTGCATTACTTGATTGGGAAAATCAGGAACCA
TCATTCAAGAACGCTAGCGACATGGGTTTAAACCAACAGATCGGCAAGAATTCTAATACCGCAGCCCCCAATGCT
ACTTCCATGAATCCCGAAGAACTCTTTGCTGCAATGGTTTCCGATACGGCTCCCAATCCTGCTTCCCCGGCGGCT
CTTGGTGGCATCGCTGCGGGCCAGGTTTCCACCGGAATTCCTCACACGCATGCTTCCACAACTGCTCCCCAGACT
ACAACAACAACTTCCCAGACGCCTTCCAGAGCCACGCGCAGATTTACATCGCATGCTGCGCCTGCAGGTGCACGT
GCTCGCAAGGCCTCTTTCGTTTCTTCGAACTCTGACCTGCTCACCGACGACGAGTCATCATACTCCCAATCCCCC
ACTCCGTCTCCATCTCAGTCCTCACAAGTTGGATCCCAGCATGAATCGGATTATGACCCTGGAGATTACCGCGCC
TACCCCGAAGCTGGTCAAGGCTTCCAGGTGCCGTCGACCCCGAGCGATCTTGACATCATGGCTGAGGATAAGAAT
TGCCTTACCTTCAGTCATTCTATCCGGGGCTCAGCGAAGCAGGCTCAGAATAAGAAGCCTTCTTCGGCGTATGCA
GTGGTGATTGATCCCGATCTTGTTCTGGTTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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