© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2918.t1 |
| Gene name | |
| Location | scaffold_04:222917..224186 |
| Strand | - |
| Gene length (bp) | 1269 |
| Transcript length (bp) | 1110 |
| Coding sequence length (bp) | 1110 |
| Protein length (aa) | 370 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 3.8E-32 | 105 | 291 |
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 8.8E-23 | 110 | 270 |
| PF08659 | KR | KR domain | 4.5E-10 | 106 | 264 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 42 | 61 | 19 |
| 2 | 66 | 88 | 22 |
| 3 | 101 | 123 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 49.02 | 27.91 | 70.14 |
| 5d_25C | Five days - 25 degrees Celsius | 43.27 | 24.22 | 62.32 |
| 7d_25C | Seven days - 25 degrees Celsius | 36.39 | 19.57 | 53.22 |
| 10d_25C | Ten days - 25 degrees Celsius | 30.87 | 16.04 | 45.71 |
| 7d_15C | Seven days - 15 degrees Celsius | 38.92 | 21.34 | 56.51 |
| 7d_30C | Seven days - 30 degrees Celsius | 40.86 | 22.54 | 59.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.685483 | no |
| 3d_25C | 7d_25C | 0.260537 | no |
| 3d_25C | 7d_15C | 0.405968 | no |
| 3d_25C | 7d_30C | 0.536426 | no |
| 3d_25C | 10d_25C | 0.059343 | no |
| 5d_25C | 7d_25C | 0.567692 | no |
| 5d_25C | 7d_15C | 0.752350 | no |
| 5d_25C | 7d_30C | 0.876610 | no |
| 5d_25C | 10d_25C | 0.197390 | no |
| 7d_25C | 7d_15C | 0.857070 | no |
| 7d_25C | 7d_30C | 0.732787 | no |
| 7d_25C | 10d_25C | 0.604176 | no |
| 7d_15C | 7d_30C | 0.898950 | no |
| 7d_15C | 10d_25C | 0.426301 | no |
| 7d_30C | 10d_25C | 0.318540 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2918.t1 MSSSNPQVLKTTAKPPQTTPGSTNPHTSLLTIDILTSILSKSLLNPFIAWIFVLCLRAHVTPSTDPAWILAVSYA TAMTVLFVVRIINQRAAYGAPRKVDFEHEVVVITGGASGLGLLIVQMYSMRGASVAVLDIKDVPEKGRDEVFGEG VLYITCDVADRRALEVARERILQELGTPTIVINCAAARINGLSLLDLPADAFEKTIRTNLLAAFHLYQVFLPGII AAKSGGTLVTVSSVLGQLSAAGLSDYAASKAGLSALHRTIEAEVRVNPLIKTLLVEVGQMSTPLFDWVRAPNHFF APILEPVEVAREMVAAIDSGRGGVIRLPFYAKLVNWYAVLPATVQRVARYLSGIDAAVTQSRQTSGKTY* |
| Coding | >Pro_DTO377G3_2|g2918.t1 ATGTCATCTTCAAATCCTCAAGTTCTAAAAACAACAGCCAAACCACCCCAGACAACTCCCGGCTCGACCAATCCA CACACCAGCCTCCTGACAATCGACATCCTAACAAGCATCCTCTCCAAATCACTACTCAACCCTTTCATAGCCTGG ATTTTCGTCCTCTGCCTACGCGCCCATGTAACCCCATCAACAGATCCAGCCTGGATCCTCGCTGTAAGCTATGCA ACGGCCATGACAGTCCTCTTCGTCGTGCGAATTATCAACCAGCGCGCCGCCTACGGCGCCCCGCGAAAAGTCGAT TTCGAGCATGAGGTCGTGGTCATCACTGGCGGGGCGAGTGGGCTAGGTCTGCTAATTGTGCAAATGTATAGCATG CGCGGGGCGAGTGTCGCTGTGCTGGATATTAAAGATGTTCCGGAAAAAGGCCGCGATGAGGTCTTTGGGGAGGGC GTTTTGTATATTACGTGTGACGTCGCGGATAGACGTGCTTTAGAAGTTGCGAGGGAGAGGATTTTGCAAGAGTTA GGAACACCGACGATCGTTATCAACTGTGCCGCGGCCAGGATCAACGGTCTCTCGCTGCTTGATCTGCCAGCGGAC GCATTCGAGAAGACAATCCGCACCAATCTCCTAGCGGCTTTCCATCTGTACCAAGTCTTCTTGCCTGGGATCATC GCAGCAAAGAGTGGAGGAACTCTTGTCACAGTCAGCTCCGTGCTGGGCCAACTGAGTGCCGCGGGACTGTCAGAC TACGCAGCGAGCAAAGCAGGACTTAGCGCGCTGCATCGGACGATAGAAGCGGAAGTTCGGGTTAACCCGTTGATC AAGACATTGCTAGTGGAAGTTGGTCAGATGTCGACGCCGTTGTTCGACTGGGTGCGTGCGCCGAATCATTTCTTT GCGCCAATCCTGGAACCCGTCGAAGTTGCCCGGGAGATGGTGGCAGCGATTGATAGCGGTCGAGGTGGTGTGATC AGGTTGCCTTTTTATGCAAAGCTCGTGAATTGGTATGCCGTGCTACCCGCTACGGTGCAGCGGGTTGCGAGATAT CTGAGTGGGATAGATGCTGCTGTTACGCAAAGCCGGCAGACATCTGGGAAGACATATTGA |
| Transcript | >Pro_DTO377G3_2|g2918.t1 ATGTCATCTTCAAATCCTCAAGTTCTAAAAACAACAGCCAAACCACCCCAGACAACTCCCGGCTCGACCAATCCA CACACCAGCCTCCTGACAATCGACATCCTAACAAGCATCCTCTCCAAATCACTACTCAACCCTTTCATAGCCTGG ATTTTCGTCCTCTGCCTACGCGCCCATGTAACCCCATCAACAGATCCAGCCTGGATCCTCGCTGTAAGCTATGCA ACGGCCATGACAGTCCTCTTCGTCGTGCGAATTATCAACCAGCGCGCCGCCTACGGCGCCCCGCGAAAAGTCGAT TTCGAGCATGAGGTCGTGGTCATCACTGGCGGGGCGAGTGGGCTAGGTCTGCTAATTGTGCAAATGTATAGCATG CGCGGGGCGAGTGTCGCTGTGCTGGATATTAAAGATGTTCCGGAAAAAGGCCGCGATGAGGTCTTTGGGGAGGGC GTTTTGTATATTACGTGTGACGTCGCGGATAGACGTGCTTTAGAAGTTGCGAGGGAGAGGATTTTGCAAGAGTTA GGAACACCGACGATCGTTATCAACTGTGCCGCGGCCAGGATCAACGGTCTCTCGCTGCTTGATCTGCCAGCGGAC GCATTCGAGAAGACAATCCGCACCAATCTCCTAGCGGCTTTCCATCTGTACCAAGTCTTCTTGCCTGGGATCATC GCAGCAAAGAGTGGAGGAACTCTTGTCACAGTCAGCTCCGTGCTGGGCCAACTGAGTGCCGCGGGACTGTCAGAC TACGCAGCGAGCAAAGCAGGACTTAGCGCGCTGCATCGGACGATAGAAGCGGAAGTTCGGGTTAACCCGTTGATC AAGACATTGCTAGTGGAAGTTGGTCAGATGTCGACGCCGTTGTTCGACTGGGTGCGTGCGCCGAATCATTTCTTT GCGCCAATCCTGGAACCCGTCGAAGTTGCCCGGGAGATGGTGGCAGCGATTGATAGCGGTCGAGGTGGTGTGATC AGGTTGCCTTTTTATGCAAAGCTCGTGAATTGGTATGCCGTGCTACCCGCTACGGTGCAGCGGGTTGCGAGATAT CTGAGTGGGATAGATGCTGCTGTTACGCAAAGCCGGCAGACATCTGGGAAGACATATTGA |
| Gene | >Pro_DTO377G3_2|g2918.t1 ATGTCATCTTCAAATCCTCAAGTTCTAAAAACAACAGCCAAACCACCCCAGACAACTCCCGGCTCGACCAATCCA CACACCAGCCTCCTGACAATCGACATCCTAACAAGCATCCTCTCCAAATCACTACTCAACCCTTTCATAGCCTGG ATTTTCGTCCTCTGCCTACGCGCCCATGTAACCCCATCAACAGATCCAGCCTGGATCCTCGCTGTAAGCTATGCA ACGGCCATGACAGTCCTCTTCGTCGTGCGAATTATCAACCAGCGCGCCGCCTACGGCGCCCCGCGAAAAGTCGAT TTCGAGCATGAGGTCGTGGTCATCACTGGCGGGGCGAGTGGGCTAGGTCTGCTAATTGTGCAAATGTATAGCATG CGCGGGGCGAGTGTCGCTGTGCTGGATATTAAAGATGTTCCGGAAAAAGGCCGCGATGAGGTCTTTGGGGAGGGC GTTTTGTATATTACGTGTGACGTCGCGGATAGACGTGCTTTAGAAGTTGCGAGGGAGAGGATTTTGCAAGAGGTA GGTTTTGCTTTTTTACTTTTGTTTTCGTTGTGACCTTCGATCCCATATCATCCTACTATTACTGCGGTTCTAGTG ATTTGAATATTTGGATAAGGTGTTTTCATAGCGCGTTATGGCTTGCTTCAATTGGGGTCTGATTCGCTAAAAATC TTGCAGTTAGGAACACCGACGATCGTTATCAACTGTGCCGCGGCCAGGATCAACGGTCTCTCGCTGCTTGATCTG CCAGCGGACGCATTCGAGAAGACAATCCGCACCAATCTCCTAGCGGCTTTCCATCTGTACCAAGTCTTCTTGCCT GGGATCATCGCAGCAAAGAGTGGAGGAACTCTTGTCACAGTCAGCTCCGTGCTGGGCCAACTGAGTGCCGCGGGA CTGTCAGACTACGCAGCGAGCAAAGCAGGACTTAGCGCGCTGCATCGGACGATAGAAGCGGAAGTTCGGGTTAAC CCGTTGATCAAGACATTGCTAGTGGAAGTTGGTCAGATGTCGACGCCGTTGTTCGACTGGGTGCGTGCGCCGAAT CATTTCTTTGCGCCAATCCTGGAACCCGTCGAAGTTGCCCGGGAGATGGTGGCAGCGATTGATAGCGGTCGAGGT GGTGTGATCAGGTTGCCTTTTTATGCAAAGCTCGTGAATTGGTATGCCGTGCTACCCGCTACGGTGCAGCGGGTT GCGAGATATCTGAGTGGGATAGATGCTGCTGTTACGCAAAGCCGGCAGACATCTGGGAAGACATATTGA |