© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g2917.t1 |
| Gene name | |
| Location | scaffold_04:221334..222734 |
| Strand | + |
| Gene length (bp) | 1400 |
| Transcript length (bp) | 1344 |
| Coding sequence length (bp) | 1344 |
| Protein length (aa) | 448 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04158 | Sof1 | Sof1-like domain | 3.3E-31 | 355 | 442 |
| PF00400 | WD40 | WD domain, G-beta repeat | 3.2E-02 | 63 | 95 |
| PF00400 | WD40 | WD domain, G-beta repeat | 2.4E-05 | 105 | 136 |
| PF00400 | WD40 | WD domain, G-beta repeat | 9.2E-06 | 276 | 311 |
| PF00400 | WD40 | WD domain, G-beta repeat | 4.8E-05 | 315 | 353 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2917.t1 MKIKALSRSTASQQAPGSAVVRQSRNLDPTQHPFERAREYTRALNAIKMERMFAAPFLAQMGNGHVDGVYSMAKD PGSLERFASGSGDGVVKVWDLTTQGEVWNTQGHENMVKGLCWTPERKLLSCASDKTIKLWDPYNSSSEAPPMATY LGNSAFTSVTHHRSLPSFAAASGVISIYDLSRPSSTPSQTMHWPTSVDTITSVAFNQTETSILASTAMDRSVIMY DLRTSQPVHKTTLRLASNAISWNPMEAFNFAVANEDHNAYIFDMRKMDRALNVLKDHVAAVMDVDFSPTGEELVT ASYDRTIRLWNRSTGHSRDIYHTKRMQRVFSATFTPDNRYVLTGSDDGNVRLWRAKASDRSGVKTARQRSKLEYD QALIQRYSHMPQIRRIKRQRHVPKPIKKAGEIKREELNAIKRREENVRKHTKKTNLAPRTHEREKMILASEQ* |
| Coding | >Pro_DTO377G3_2|g2917.t1 ATGAAAATCAAAGCACTCTCCCGCTCCACGGCGTCGCAACAGGCCCCCGGGTCCGCTGTCGTTCGCCAGTCGCGG AATCTCGACCCGACTCAACATCCTTTTGAGCGGGCTCGTGAATATACTCGAGCTCTGAATGCGATCAAGATGGAG CGCATGTTTGCTGCTCCTTTCTTAGCCCAGATGGGTAACGGACACGTTGACGGTGTTTACTCTATGGCAAAGGAC CCCGGCTCACTTGAACGCTTTGCAAGTGGCAGTGGTGATGGTGTGGTGAAGGTGTGGGATCTAACGACGCAGGGC GAGGTTTGGAATACCCAAGGTCATGAAAACATGGTCAAGGGTTTGTGTTGGACGCCGGAGCGAAAACTTCTGTCA TGCGCGAGTGACAAGACGATTAAATTGTGGGATCCATACAACTCATCATCTGAGGCCCCACCGATGGCAACCTAT CTCGGAAATAGTGCCTTCACCAGTGTCACGCATCATCGGAGCCTCCCTTCTTTTGCTGCGGCTTCTGGTGTCATC TCTATCTATGACCTTTCCCGGCCGTCATCCACACCATCGCAGACTATGCACTGGCCGACCAGCGTTGACACCATC ACATCGGTTGCATTCAACCAGACTGAGACTTCTATCCTGGCTTCAACTGCTATGGACCGCTCAGTCATTATGTAC GACCTGCGCACTTCCCAGCCGGTGCACAAGACGACATTGAGACTAGCATCTAACGCCATTTCTTGGAACCCAATG GAAGCATTCAACTTTGCCGTGGCGAACGAGGATCACAACGCCTACATCTTCGATATGAGAAAGATGGACCGTGCT CTCAATGTCCTGAAGGACCATGTGGCTGCTGTTATGGATGTTGATTTCAGTCCCACGGGTGAAGAGCTGGTCACT GCCTCATACGATCGGACAATCCGCCTATGGAACAGATCAACTGGTCACTCGCGTGACATCTACCACACAAAGCGG ATGCAACGTGTTTTCTCGGCAACATTCACGCCTGACAACAGGTATGTCTTGACAGGATCGGACGATGGCAATGTT CGTCTCTGGCGTGCCAAGGCATCGGATCGCAGTGGAGTCAAGACTGCCCGTCAGCGTTCCAAGCTAGAGTACGAT CAAGCTCTGATCCAGCGGTACTCGCACATGCCTCAAATTCGCCGCATCAAGCGCCAGCGTCATGTGCCCAAGCCG ATCAAGAAGGCTGGTGAAATCAAGCGCGAGGAGCTCAATGCTATTAAGAGGCGCGAGGAGAATGTGCGCAAGCAT ACTAAGAAGACTAACCTGGCGCCGAGAACACATGAGCGTGAGAAGATGATTCTGGCCAGCGAGCAATAA |
| Transcript | >Pro_DTO377G3_2|g2917.t1 ATGAAAATCAAAGCACTCTCCCGCTCCACGGCGTCGCAACAGGCCCCCGGGTCCGCTGTCGTTCGCCAGTCGCGG AATCTCGACCCGACTCAACATCCTTTTGAGCGGGCTCGTGAATATACTCGAGCTCTGAATGCGATCAAGATGGAG CGCATGTTTGCTGCTCCTTTCTTAGCCCAGATGGGTAACGGACACGTTGACGGTGTTTACTCTATGGCAAAGGAC CCCGGCTCACTTGAACGCTTTGCAAGTGGCAGTGGTGATGGTGTGGTGAAGGTGTGGGATCTAACGACGCAGGGC GAGGTTTGGAATACCCAAGGTCATGAAAACATGGTCAAGGGTTTGTGTTGGACGCCGGAGCGAAAACTTCTGTCA TGCGCGAGTGACAAGACGATTAAATTGTGGGATCCATACAACTCATCATCTGAGGCCCCACCGATGGCAACCTAT CTCGGAAATAGTGCCTTCACCAGTGTCACGCATCATCGGAGCCTCCCTTCTTTTGCTGCGGCTTCTGGTGTCATC TCTATCTATGACCTTTCCCGGCCGTCATCCACACCATCGCAGACTATGCACTGGCCGACCAGCGTTGACACCATC ACATCGGTTGCATTCAACCAGACTGAGACTTCTATCCTGGCTTCAACTGCTATGGACCGCTCAGTCATTATGTAC GACCTGCGCACTTCCCAGCCGGTGCACAAGACGACATTGAGACTAGCATCTAACGCCATTTCTTGGAACCCAATG GAAGCATTCAACTTTGCCGTGGCGAACGAGGATCACAACGCCTACATCTTCGATATGAGAAAGATGGACCGTGCT CTCAATGTCCTGAAGGACCATGTGGCTGCTGTTATGGATGTTGATTTCAGTCCCACGGGTGAAGAGCTGGTCACT GCCTCATACGATCGGACAATCCGCCTATGGAACAGATCAACTGGTCACTCGCGTGACATCTACCACACAAAGCGG ATGCAACGTGTTTTCTCGGCAACATTCACGCCTGACAACAGGTATGTCTTGACAGGATCGGACGATGGCAATGTT CGTCTCTGGCGTGCCAAGGCATCGGATCGCAGTGGAGTCAAGACTGCCCGTCAGCGTTCCAAGCTAGAGTACGAT CAAGCTCTGATCCAGCGGTACTCGCACATGCCTCAAATTCGCCGCATCAAGCGCCAGCGTCATGTGCCCAAGCCG ATCAAGAAGGCTGGTGAAATCAAGCGCGAGGAGCTCAATGCTATTAAGAGGCGCGAGGAGAATGTGCGCAAGCAT ACTAAGAAGACTAACCTGGCGCCGAGAACACATGAGCGTGAGAAGATGATTCTGGCCAGCGAGCAATAA |
| Gene | >Pro_DTO377G3_2|g2917.t1 ATGGTGGGTATTTTTCTTTGAAATTATGTCTTTTGGATAGCCATGCTAATGGATTATAGAAAATCAAAGCACTCT CCCGCTCCACGGCGTCGCAACAGGCCCCCGGGTCCGCTGTCGTTCGCCAGTCGCGGAATCTCGACCCGACTCAAC ATCCTTTTGAGCGGGCTCGTGAATATACTCGAGCTCTGAATGCGATCAAGATGGAGCGCATGTTTGCTGCTCCTT TCTTAGCCCAGATGGGTAACGGACACGTTGACGGTGTTTACTCTATGGCAAAGGACCCCGGCTCACTTGAACGCT TTGCAAGTGGCAGTGGTGATGGTGTGGTGAAGGTGTGGGATCTAACGACGCAGGGCGAGGTTTGGAATACCCAAG GTCATGAAAACATGGTCAAGGGTTTGTGTTGGACGCCGGAGCGAAAACTTCTGTCATGCGCGAGTGACAAGACGA TTAAATTGTGGGATCCATACAACTCATCATCTGAGGCCCCACCGATGGCAACCTATCTCGGAAATAGTGCCTTCA CCAGTGTCACGCATCATCGGAGCCTCCCTTCTTTTGCTGCGGCTTCTGGTGTCATCTCTATCTATGACCTTTCCC GGCCGTCATCCACACCATCGCAGACTATGCACTGGCCGACCAGCGTTGACACCATCACATCGGTTGCATTCAACC AGACTGAGACTTCTATCCTGGCTTCAACTGCTATGGACCGCTCAGTCATTATGTACGACCTGCGCACTTCCCAGC CGGTGCACAAGACGACATTGAGACTAGCATCTAACGCCATTTCTTGGAACCCAATGGAAGCATTCAACTTTGCCG TGGCGAACGAGGATCACAACGCCTACATCTTCGATATGAGAAAGATGGACCGTGCTCTCAATGTCCTGAAGGACC ATGTGGCTGCTGTTATGGATGTTGATTTCAGTCCCACGGGTGAAGAGCTGGTCACTGCCTCATACGATCGGACAA TCCGCCTATGGAACAGATCAACTGGTCACTCGCGTGACATCTACCACACAAAGCGGATGCAACGTGTTTTCTCGG CAACATTCACGCCTGACAACAGGTATGTCTTGACAGGATCGGACGATGGCAATGTTCGTCTCTGGCGTGCCAAGG CATCGGATCGCAGTGGAGTCAAGACTGCCCGTCAGCGTTCCAAGCTAGAGTACGATCAAGCTCTGATCCAGCGGT ACTCGCACATGCCTCAAATTCGCCGCATCAAGCGCCAGCGTCATGTGCCCAAGCCGATCAAGAAGGCTGGTGAAA TCAAGCGCGAGGAGCTCAATGCTATTAAGAGGCGCGAGGAGAATGTGCGCAAGCATACTAAGAAGACTAACCTGG CGCCGAGAACACATGAGCGTGAGAAGATGATTCTGGCCAGCGAGCAATAA |