© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2901.t1 |
| Gene name | |
| Location | scaffold_04:182656..183838 |
| Strand | - |
| Gene length (bp) | 1182 |
| Transcript length (bp) | 942 |
| Coding sequence length (bp) | 942 |
| Protein length (aa) | 314 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 6.0E-17 | 15 | 70 |
| PF04193 | PQ-loop | PQ loop repeat | 4.8E-19 | 217 | 271 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 175 | 197 | 22 |
| 4 | 212 | 231 | 19 |
| 5 | 244 | 266 | 22 |
| 6 | 281 | 303 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2901.t1 MEQGPIPLTAREAASGLLGSVSMTCWFFLLVPQLIENYRNGNSEAISLLFLFVWFVGDVANLAGGLLAGLVPVIV AIAVYFCMADGVLIAQCLYYKVRNSRPEPLHRRRSSTVSVEPTTPLLGRRFSESIASRRRSSGSLRRYHTGGRRE SEVEDTLAKIVEENDYGRKAWIKNFTSVVGIFLIGATGWTMAWQTGMWAPAPLDNNNGSEEAVGGLLLGYFSAVC YLGARLPQIYKNWSEKSCEGLSLLFFILSLMGNLTYGAGILCHSTEKEYFLTNLPWLIGSLGTIVEDAVIFFQFR IYAVQDPHLSAIS* |
| Coding | >Pro_DTO377G3_2|g2901.t1 ATGGAACAAGGCCCTATACCTTTAACAGCCCGTGAGGCTGCATCTGGTCTCTTGGGCTCAGTCTCTATGACCTGC TGGTTTTTCCTTTTGGTACCTCAACTAATTGAGAATTATCGCAATGGCAACTCAGAGGCTATATCTCTCCTCTTC CTCTTTGTTTGGTTCGTCGGCGATGTCGCAAACCTTGCTGGTGGCCTACTAGCCGGGCTTGTGCCCGTGATCGTT GCGATCGCGGTATACTTCTGTATGGCAGACGGCGTGCTCATCGCGCAATGTTTGTACTATAAAGTGCGCAACTCG CGTCCCGAGCCTCTCCACCGCCGACGCTCGTCCACCGTCTCTGTGGAGCCGACTACCCCGTTGCTGGGGCGGCGA TTCAGCGAATCTATCGCGTCGCGGCGCCGGTCGTCGGGCTCACTGCGCCGGTATCACACTGGTGGCCGGCGCGAG AGTGAGGTCGAGGATACCCTGGCCAAGATCGTCGAGGAGAATGATTATGGCCGCAAGGCATGGATCAAGAATTTT ACTAGTGTTGTTGGAATTTTCCTCATTGGTGCGACTGGTTGGACCATGGCTTGGCAGACCGGGATGTGGGCGCCG GCGCCTTTGGATAATAACAATGGTTCTGAGGAGGCTGTTGGGGGGCTGCTGCTGGGGTATTTCAGCGCCGTGTGC TATCTGGGAGCGAGATTGCCTCAGATCTATAAGAACTGGAGCGAGAAGTCGTGCGAAGGGTTGTCGCTCTTGTTC TTTATTCTCTCTCTTATGGGAAACCTGACTTACGGTGCAGGAATTCTTTGCCATTCTACAGAGAAAGAGTATTTC CTCACCAATCTTCCTTGGCTTATTGGATCGCTGGGAACTATTGTTGAGGATGCCGTCATCTTCTTCCAATTCCGG ATCTACGCTGTTCAAGACCCTCATCTCTCGGCGATCTCCTAA |
| Transcript | >Pro_DTO377G3_2|g2901.t1 ATGGAACAAGGCCCTATACCTTTAACAGCCCGTGAGGCTGCATCTGGTCTCTTGGGCTCAGTCTCTATGACCTGC TGGTTTTTCCTTTTGGTACCTCAACTAATTGAGAATTATCGCAATGGCAACTCAGAGGCTATATCTCTCCTCTTC CTCTTTGTTTGGTTCGTCGGCGATGTCGCAAACCTTGCTGGTGGCCTACTAGCCGGGCTTGTGCCCGTGATCGTT GCGATCGCGGTATACTTCTGTATGGCAGACGGCGTGCTCATCGCGCAATGTTTGTACTATAAAGTGCGCAACTCG CGTCCCGAGCCTCTCCACCGCCGACGCTCGTCCACCGTCTCTGTGGAGCCGACTACCCCGTTGCTGGGGCGGCGA TTCAGCGAATCTATCGCGTCGCGGCGCCGGTCGTCGGGCTCACTGCGCCGGTATCACACTGGTGGCCGGCGCGAG AGTGAGGTCGAGGATACCCTGGCCAAGATCGTCGAGGAGAATGATTATGGCCGCAAGGCATGGATCAAGAATTTT ACTAGTGTTGTTGGAATTTTCCTCATTGGTGCGACTGGTTGGACCATGGCTTGGCAGACCGGGATGTGGGCGCCG GCGCCTTTGGATAATAACAATGGTTCTGAGGAGGCTGTTGGGGGGCTGCTGCTGGGGTATTTCAGCGCCGTGTGC TATCTGGGAGCGAGATTGCCTCAGATCTATAAGAACTGGAGCGAGAAGTCGTGCGAAGGGTTGTCGCTCTTGTTC TTTATTCTCTCTCTTATGGGAAACCTGACTTACGGTGCAGGAATTCTTTGCCATTCTACAGAGAAAGAGTATTTC CTCACCAATCTTCCTTGGCTTATTGGATCGCTGGGAACTATTGTTGAGGATGCCGTCATCTTCTTCCAATTCCGG ATCTACGCTGTTCAAGACCCTCATCTCTCGGCGATCTCCTAA |
| Gene | >Pro_DTO377G3_2|g2901.t1 ATGGAACAAGGCCCTATACCTTTAACAGCCCGTGAGGCTGCATCTGGTCTCTTGGGCTCAGTCTCTATGACCTGC TGGTTTTTCCTTTTGGTATGTTTAGCAACCAGACTCGCACCTCGAAATCCAAAGTGGACACAATCCATATCTAAC AATACTGTTTCAGGTACCTCAACTAATTGAGAATTATCGCAATGGCAACTCAGAGGCTATATCTCTCCTCTTCCT CTTTGTTTGGTTCGTCGGCGATGTCGCAAACCTTGCTGGTGGCCTACTAGCCGGGCTTGTGCCCGTGATCGTTGC GATCGCGGTATACTTCTGTATGGCAGACGGCGTGCTCATCGCGCAATGTTTGTACTATAAAGTGCGCAACTCGCG TCCCGAGCCTCTCCACCGCCGACGCTCGTCCACCGTCTCTGTGGAGCCGACTACCCCGTTGCTGGGGCGGCGATT CAGCGAATCTATCGCGTCGCGGCGCCGGTCGTCGGGCTCACTGCGCCGGTATCACACTGGTGGCCGGCGCGAGAG TGAGGTCGAGGATACCCTGGCCAAGATCGTCGAGGAGAATGATTATGGCCGCAAGGCATGGATCAAGAATTTTAC TAGTGTTGTTGGAATTTTCCTCATTGGTGCGACTGGTTGGACCATGGCTTGGCAGACCGGGATGTGGGCGCCGGC GCCTTTGGATAATAACAATGGTTCTGAGGAGGCTGTTGGGGGGCTGCTGCTGGGGTATTTCAGCGCCGTGTGCTA TCTGGGGTGAGTGTCTCCTGCCGTTATGGCTGATGAGTTGGTATTGACTTTGATTCCAGAGCGAGATTGCCTCAG ATCTATAAGAACTGGAGCGAGAAGTCGTGCGAAGGTATTTTTTCACTGTCTTCACATGCACGTATCAGGCCGGTA TTGACTTTGATCTAGGGTTGTCGCTCTTGTTCTTTATTCTCTCTCTTATGGGAAACCTGACTTACGGTGCAGGAG TGAGTGATACTACACGTTGTACTATAAACTGGACATAAGCTAATGGTGTTCATATAGATTCTTTGCCATTCTACA GAGAAAGAGTATTTCCTCACCAATCTTCCTTGGCTTATTGGATCGCTGGGAACTATTGTTGAGGATGCCGTCATC TTCTTCCAATTCCGGATCTACGCTGTTCAAGACCCTCATCTCTCGGCGATCTCCTAA |