© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2899.t1 |
| Gene name | |
| Location | scaffold_04:178856..180573 |
| Strand | - |
| Gene length (bp) | 1717 |
| Transcript length (bp) | 1329 |
| Coding sequence length (bp) | 1329 |
| Protein length (aa) | 443 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10303 | DUF2408 | Protein of unknown function (DUF2408) | 4.2E-29 | 173 | 293 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 234.23 | 140.88 | 327.58 |
| 5d_25C | Five days - 25 degrees Celsius | 260.23 | 155.13 | 365.33 |
| 7d_25C | Seven days - 25 degrees Celsius | 252.52 | 150.59 | 354.46 |
| 10d_25C | Ten days - 25 degrees Celsius | 293.72 | 174.22 | 413.21 |
| 7d_15C | Seven days - 15 degrees Celsius | 335.77 | 194.07 | 477.47 |
| 7d_30C | Seven days - 30 degrees Celsius | 205.28 | 121.55 | 289.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.720227 | no |
| 3d_25C | 7d_25C | 0.808712 | no |
| 3d_25C | 7d_15C | 0.119453 | no |
| 3d_25C | 7d_30C | 0.640433 | no |
| 3d_25C | 10d_25C | 0.349953 | no |
| 5d_25C | 7d_25C | 0.931464 | no |
| 5d_25C | 7d_15C | 0.314304 | no |
| 5d_25C | 7d_30C | 0.342690 | no |
| 5d_25C | 10d_25C | 0.678744 | no |
| 7d_25C | 7d_15C | 0.245421 | no |
| 7d_25C | 7d_30C | 0.417655 | no |
| 7d_25C | 10d_25C | 0.580281 | no |
| 7d_15C | 7d_30C | 0.021670 | yes |
| 7d_15C | 10d_25C | 0.645925 | no |
| 7d_30C | 10d_25C | 0.112170 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2899.t1 MESPAIPVPLDPREQPILENLLRTRDALLLIKRDKSSYVKSRDVLPLYEEVIAEVEKLNSVRKEQDRRLVHNRLD YILDDCFQLISLLFLTVGKNNEAPAVYSLATTIQRLLDHLEEAGFYSSKDLNSITKTLESTRETLERGRNTYSPA LLTLLESRLEHCDQSLAKLQKGLAVLAPSLVQTHETLVSILRSTSAVNTRSKFSAAEVNSLREQLKKIEKTAKDG NFVDDEGNVLAGQENVKSLIHRCWRWTEIVLEREGKIDERFRDQYERLLDIRNQLDRLSVTQAWSLRETDLFVYQ RKLDRIDEARVNGNFIDAEGQPADLHAQRTLLYLIRRSYAYIYALLISSEPVSEALLPVYNQLQTLRRCLIEVKE SGGVANSRELYPYSMKLNSIDNMRVDGKFYVGPDIPEGQGCVNNLLAECYDLVWELRAAVVGEEGES* |
| Coding | >Pro_DTO377G3_2|g2899.t1 ATGGAGTCCCCCGCCATCCCGGTCCCGCTGGATCCGCGGGAGCAGCCCATCCTTGAAAACCTGCTCCGGACCCGC GACGCGCTGCTCCTAATCAAGCGGGATAAGTCCTCATATGTAAAGTCTCGCGATGTCCTACCGCTTTATGAGGAA GTGATCGCAGAAGTCGAGAAACTCAATTCCGTTCGTAAAGAGCAAGATCGCCGCTTGGTACACAATCGCCTGGAT TATATCTTGGATGATTGCTTTCAGTTGATTTCCCTACTGTTCTTGACAGTTGGGAAGAACAACGAAGCTCCCGCA GTATACTCCTTGGCGACTACTATCCAGCGTTTACTCGACCACCTTGAAGAGGCTGGATTTTATAGCTCGAAGGAC TTGAACTCGATCACCAAGACACTAGAGTCTACACGGGAAACTCTCGAGCGTGGCCGAAACACATACTCACCCGCT CTCCTCACGCTTTTGGAAAGCCGTCTGGAACACTGTGACCAGTCACTGGCGAAGTTGCAGAAGGGTCTTGCTGTA TTGGCTCCTTCCTTGGTGCAGACACACGAGACACTGGTCTCAATTCTGCGGTCTACATCAGCTGTCAACACTCGG TCAAAATTCTCGGCTGCGGAGGTAAATTCTCTTCGAGAACAACTGAAGAAAATTGAAAAGACGGCAAAGGACGGC AACTTTGTTGACGACGAGGGAAATGTTCTTGCCGGGCAGGAAAATGTCAAGTCTTTGATTCACAGGTGTTGGCGA TGGACTGAAATTGTGCTTGAGCGAGAGGGCAAAATTGATGAGCGGTTCCGAGATCAATACGAACGATTGTTGGAC ATCCGCAACCAACTGGATCGTTTGTCTGTAACACAAGCTTGGTCGCTGCGCGAGACCGATCTCTTCGTATACCAG CGAAAGCTCGACCGAATTGACGAGGCACGGGTTAATGGAAATTTCATCGATGCTGAGGGTCAGCCGGCGGACCTG CATGCGCAGCGAACGCTTCTATACCTCATTCGTCGCAGTTATGCATACATCTATGCGCTTTTGATTTCATCAGAG CCGGTATCTGAAGCTTTACTCCCAGTCTACAACCAACTTCAAACTCTCCGCCGGTGCTTGATTGAAGTCAAGGAG TCTGGGGGTGTTGCAAATTCACGCGAACTTTACCCATACAGCATGAAGCTCAACTCGATTGACAACATGCGAGTT GACGGGAAATTCTACGTGGGTCCAGATATCCCAGAGGGACAGGGCTGTGTCAATAATCTGCTAGCCGAATGCTAC GATTTGGTTTGGGAGCTCCGTGCCGCTGTGGTTGGCGAGGAAGGAGAGTCTTAA |
| Transcript | >Pro_DTO377G3_2|g2899.t1 ATGGAGTCCCCCGCCATCCCGGTCCCGCTGGATCCGCGGGAGCAGCCCATCCTTGAAAACCTGCTCCGGACCCGC GACGCGCTGCTCCTAATCAAGCGGGATAAGTCCTCATATGTAAAGTCTCGCGATGTCCTACCGCTTTATGAGGAA GTGATCGCAGAAGTCGAGAAACTCAATTCCGTTCGTAAAGAGCAAGATCGCCGCTTGGTACACAATCGCCTGGAT TATATCTTGGATGATTGCTTTCAGTTGATTTCCCTACTGTTCTTGACAGTTGGGAAGAACAACGAAGCTCCCGCA GTATACTCCTTGGCGACTACTATCCAGCGTTTACTCGACCACCTTGAAGAGGCTGGATTTTATAGCTCGAAGGAC TTGAACTCGATCACCAAGACACTAGAGTCTACACGGGAAACTCTCGAGCGTGGCCGAAACACATACTCACCCGCT CTCCTCACGCTTTTGGAAAGCCGTCTGGAACACTGTGACCAGTCACTGGCGAAGTTGCAGAAGGGTCTTGCTGTA TTGGCTCCTTCCTTGGTGCAGACACACGAGACACTGGTCTCAATTCTGCGGTCTACATCAGCTGTCAACACTCGG TCAAAATTCTCGGCTGCGGAGGTAAATTCTCTTCGAGAACAACTGAAGAAAATTGAAAAGACGGCAAAGGACGGC AACTTTGTTGACGACGAGGGAAATGTTCTTGCCGGGCAGGAAAATGTCAAGTCTTTGATTCACAGGTGTTGGCGA TGGACTGAAATTGTGCTTGAGCGAGAGGGCAAAATTGATGAGCGGTTCCGAGATCAATACGAACGATTGTTGGAC ATCCGCAACCAACTGGATCGTTTGTCTGTAACACAAGCTTGGTCGCTGCGCGAGACCGATCTCTTCGTATACCAG CGAAAGCTCGACCGAATTGACGAGGCACGGGTTAATGGAAATTTCATCGATGCTGAGGGTCAGCCGGCGGACCTG CATGCGCAGCGAACGCTTCTATACCTCATTCGTCGCAGTTATGCATACATCTATGCGCTTTTGATTTCATCAGAG CCGGTATCTGAAGCTTTACTCCCAGTCTACAACCAACTTCAAACTCTCCGCCGGTGCTTGATTGAAGTCAAGGAG TCTGGGGGTGTTGCAAATTCACGCGAACTTTACCCATACAGCATGAAGCTCAACTCGATTGACAACATGCGAGTT GACGGGAAATTCTACGTGGGTCCAGATATCCCAGAGGGACAGGGCTGTGTCAATAATCTGCTAGCCGAATGCTAC GATTTGGTTTGGGAGCTCCGTGCCGCTGTGGTTGGCGAGGAAGGAGAGTCTTAA |
| Gene | >Pro_DTO377G3_2|g2899.t1 ATGGAGTCCCCCGCCATCCCGGTCCCGCTGGATCCGCGGGAGCAGCCCATCCTTGAAAACCTGCTCCGGACCCGC GACGCGCTGCTCCTAATCAAGCGGGATAAGTCCTCATATGTAAAGTCTCGCGATGTCCTACCGCTTTATGAGGAA GTGATCGCAGAAGTCGAGAAACTCAATTCCGTTCGTAAAGAGCAAGATCGCCGCTTGGTACACAATCGCCGTGAG TTTAGTAGACCTTGCGCTCGACTTGGAGGTGACTGACGTTCAATGATAGTGGATTATATCTTGGATGATTGCTTT CAGTTGATTTCCCTACTGTTCTTGACAGTTGGGAAGAACAACGAAGCTCCCGCAGTGTGAGCGATAATGTTATTA CCCCGCCATCTTGTGACAGTGACTGACATTTTGCCAGATACTCCTTGGCGACTACTATCCAGGTATTGACTCCTA TAATCTCCTTCGGCTCTCGTTAGCTTTGCGCGCTGGGTACTGACGATCTTGCAGCGTTTACTCGACCACCTTGAA GAGGCTGGATTTTATAGCTCGAAGGACTTGAACTCGATCACCAAGACACTAGAGTCTACACGGGAAACTCTCGAG CGTGGCCGAAACACATACTCACCCGCTCTCCTCACGCTTTTGGAAAGCCGTCTGGAACACTGTGACCAGTCACTG GCGAAGTTGCAGAAGGGTCTTGCTGTATTGGCTCCTTCCTTGGTGCAGACACACGAGACACTGGTCTCAATTCTG CGGTCTACATCAGCTGTCAACACTCGGTCAAAAGTATGGCATCGAACAATTCTATAACCCATCTGATTAGTACTA ACTCACTGTTAATTGCTAGTTCTCGGCTGCGGAGGTAAATTCTCTTCGAGAACAACTGAAGAAAATTGAAAAGAC GGCAAAGGACGGCAACTTTGTTGACGACGAGGGAAATGTTCTTGCCGGGCAGGAAAATGTCAAGTCTTTGATTCA CAGGTGTTGGCGATGGACTGAAATTGTGCTTGAGCGGTATGTTCTAGGCTGCCAACGGGATGACAGACATCGACT GATTCAAATACAGAGAGGGCAAAATTGATGAGCGGTTCCGAGATCAATACGAACGATTGTTGGACATCCGCAACC AACTGGATCGTTTGTCTGTAACACAAGCTTGGTCGCTGCGCGAGACCGATCTCTTCGTATACCAGCGAAAGCTCG ACCGAATTGACGAGGCACGGGTTAATGGAAATTTCATCGATGCTGAGGGTCAGCCGGCGGACCTGCATGCGCAGC GAGTAAGATTTTATTTTCGGGCATTCTTTGGTGGATTCTGGCTAACATGATCAGACGCTTCTATACCTCATTCGT CGCAGTTATGCATACATCTATGCGCTTTTGATTTCATCAGAGCCGGTATCTGAAGCTTTACTCCCAGTCTACAAC CAACTTCAAACTCTCCGCCGGTGCTTGATTGAAGTCAAGGAGTCTGGGGGTGTTGCAAATTCACGCGAACTTTAC CCATACAGCATGAAGGTATGTAACCGTCCACGCTGCTTGCGTATAAAGCTAACAAAAACAGCTCAACTCGATTGA CAACATGCGAGTTGACGGGAAATTCTACGTGGGTCCAGATATCCCAGAGGGACAGGGCTGTGTCAATAATCTGCT AGCCGAATGCTACGATTTGGTTTGGGAGCTCCGTGCCGCTGTGGTTGGCGAGGAAGGAGAGTCTTAA |