Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2899.t1
Gene name
Locationscaffold_04:178856..180573
Strand-
Gene length (bp)1717
Transcript length (bp)1329
Coding sequence length (bp)1329
Protein length (aa) 443

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10303 DUF2408 Protein of unknown function (DUF2408) 4.2E-29 173 293

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 13 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 234.23 140.88 327.58
5d_25C Five days - 25 degrees Celsius 260.23 155.13 365.33
7d_25C Seven days - 25 degrees Celsius 252.52 150.59 354.46
10d_25C Ten days - 25 degrees Celsius 293.72 174.22 413.21
7d_15C Seven days - 15 degrees Celsius 335.77 194.07 477.47
7d_30C Seven days - 30 degrees Celsius 205.28 121.55 289.00

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.720227 no
3d_25C 7d_25C 0.808712 no
3d_25C 7d_15C 0.119453 no
3d_25C 7d_30C 0.640433 no
3d_25C 10d_25C 0.349953 no
5d_25C 7d_25C 0.931464 no
5d_25C 7d_15C 0.314304 no
5d_25C 7d_30C 0.342690 no
5d_25C 10d_25C 0.678744 no
7d_25C 7d_15C 0.245421 no
7d_25C 7d_30C 0.417655 no
7d_25C 10d_25C 0.580281 no
7d_15C 7d_30C 0.021670 yes
7d_15C 10d_25C 0.645925 no
7d_30C 10d_25C 0.112170 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2899.t1
MESPAIPVPLDPREQPILENLLRTRDALLLIKRDKSSYVKSRDVLPLYEEVIAEVEKLNSVRKEQDRRLVHNRLD
YILDDCFQLISLLFLTVGKNNEAPAVYSLATTIQRLLDHLEEAGFYSSKDLNSITKTLESTRETLERGRNTYSPA
LLTLLESRLEHCDQSLAKLQKGLAVLAPSLVQTHETLVSILRSTSAVNTRSKFSAAEVNSLREQLKKIEKTAKDG
NFVDDEGNVLAGQENVKSLIHRCWRWTEIVLEREGKIDERFRDQYERLLDIRNQLDRLSVTQAWSLRETDLFVYQ
RKLDRIDEARVNGNFIDAEGQPADLHAQRTLLYLIRRSYAYIYALLISSEPVSEALLPVYNQLQTLRRCLIEVKE
SGGVANSRELYPYSMKLNSIDNMRVDGKFYVGPDIPEGQGCVNNLLAECYDLVWELRAAVVGEEGES*
Coding >Pro_DTO377G3_2|g2899.t1
ATGGAGTCCCCCGCCATCCCGGTCCCGCTGGATCCGCGGGAGCAGCCCATCCTTGAAAACCTGCTCCGGACCCGC
GACGCGCTGCTCCTAATCAAGCGGGATAAGTCCTCATATGTAAAGTCTCGCGATGTCCTACCGCTTTATGAGGAA
GTGATCGCAGAAGTCGAGAAACTCAATTCCGTTCGTAAAGAGCAAGATCGCCGCTTGGTACACAATCGCCTGGAT
TATATCTTGGATGATTGCTTTCAGTTGATTTCCCTACTGTTCTTGACAGTTGGGAAGAACAACGAAGCTCCCGCA
GTATACTCCTTGGCGACTACTATCCAGCGTTTACTCGACCACCTTGAAGAGGCTGGATTTTATAGCTCGAAGGAC
TTGAACTCGATCACCAAGACACTAGAGTCTACACGGGAAACTCTCGAGCGTGGCCGAAACACATACTCACCCGCT
CTCCTCACGCTTTTGGAAAGCCGTCTGGAACACTGTGACCAGTCACTGGCGAAGTTGCAGAAGGGTCTTGCTGTA
TTGGCTCCTTCCTTGGTGCAGACACACGAGACACTGGTCTCAATTCTGCGGTCTACATCAGCTGTCAACACTCGG
TCAAAATTCTCGGCTGCGGAGGTAAATTCTCTTCGAGAACAACTGAAGAAAATTGAAAAGACGGCAAAGGACGGC
AACTTTGTTGACGACGAGGGAAATGTTCTTGCCGGGCAGGAAAATGTCAAGTCTTTGATTCACAGGTGTTGGCGA
TGGACTGAAATTGTGCTTGAGCGAGAGGGCAAAATTGATGAGCGGTTCCGAGATCAATACGAACGATTGTTGGAC
ATCCGCAACCAACTGGATCGTTTGTCTGTAACACAAGCTTGGTCGCTGCGCGAGACCGATCTCTTCGTATACCAG
CGAAAGCTCGACCGAATTGACGAGGCACGGGTTAATGGAAATTTCATCGATGCTGAGGGTCAGCCGGCGGACCTG
CATGCGCAGCGAACGCTTCTATACCTCATTCGTCGCAGTTATGCATACATCTATGCGCTTTTGATTTCATCAGAG
CCGGTATCTGAAGCTTTACTCCCAGTCTACAACCAACTTCAAACTCTCCGCCGGTGCTTGATTGAAGTCAAGGAG
TCTGGGGGTGTTGCAAATTCACGCGAACTTTACCCATACAGCATGAAGCTCAACTCGATTGACAACATGCGAGTT
GACGGGAAATTCTACGTGGGTCCAGATATCCCAGAGGGACAGGGCTGTGTCAATAATCTGCTAGCCGAATGCTAC
GATTTGGTTTGGGAGCTCCGTGCCGCTGTGGTTGGCGAGGAAGGAGAGTCTTAA
Transcript >Pro_DTO377G3_2|g2899.t1
ATGGAGTCCCCCGCCATCCCGGTCCCGCTGGATCCGCGGGAGCAGCCCATCCTTGAAAACCTGCTCCGGACCCGC
GACGCGCTGCTCCTAATCAAGCGGGATAAGTCCTCATATGTAAAGTCTCGCGATGTCCTACCGCTTTATGAGGAA
GTGATCGCAGAAGTCGAGAAACTCAATTCCGTTCGTAAAGAGCAAGATCGCCGCTTGGTACACAATCGCCTGGAT
TATATCTTGGATGATTGCTTTCAGTTGATTTCCCTACTGTTCTTGACAGTTGGGAAGAACAACGAAGCTCCCGCA
GTATACTCCTTGGCGACTACTATCCAGCGTTTACTCGACCACCTTGAAGAGGCTGGATTTTATAGCTCGAAGGAC
TTGAACTCGATCACCAAGACACTAGAGTCTACACGGGAAACTCTCGAGCGTGGCCGAAACACATACTCACCCGCT
CTCCTCACGCTTTTGGAAAGCCGTCTGGAACACTGTGACCAGTCACTGGCGAAGTTGCAGAAGGGTCTTGCTGTA
TTGGCTCCTTCCTTGGTGCAGACACACGAGACACTGGTCTCAATTCTGCGGTCTACATCAGCTGTCAACACTCGG
TCAAAATTCTCGGCTGCGGAGGTAAATTCTCTTCGAGAACAACTGAAGAAAATTGAAAAGACGGCAAAGGACGGC
AACTTTGTTGACGACGAGGGAAATGTTCTTGCCGGGCAGGAAAATGTCAAGTCTTTGATTCACAGGTGTTGGCGA
TGGACTGAAATTGTGCTTGAGCGAGAGGGCAAAATTGATGAGCGGTTCCGAGATCAATACGAACGATTGTTGGAC
ATCCGCAACCAACTGGATCGTTTGTCTGTAACACAAGCTTGGTCGCTGCGCGAGACCGATCTCTTCGTATACCAG
CGAAAGCTCGACCGAATTGACGAGGCACGGGTTAATGGAAATTTCATCGATGCTGAGGGTCAGCCGGCGGACCTG
CATGCGCAGCGAACGCTTCTATACCTCATTCGTCGCAGTTATGCATACATCTATGCGCTTTTGATTTCATCAGAG
CCGGTATCTGAAGCTTTACTCCCAGTCTACAACCAACTTCAAACTCTCCGCCGGTGCTTGATTGAAGTCAAGGAG
TCTGGGGGTGTTGCAAATTCACGCGAACTTTACCCATACAGCATGAAGCTCAACTCGATTGACAACATGCGAGTT
GACGGGAAATTCTACGTGGGTCCAGATATCCCAGAGGGACAGGGCTGTGTCAATAATCTGCTAGCCGAATGCTAC
GATTTGGTTTGGGAGCTCCGTGCCGCTGTGGTTGGCGAGGAAGGAGAGTCTTAA
Gene >Pro_DTO377G3_2|g2899.t1
ATGGAGTCCCCCGCCATCCCGGTCCCGCTGGATCCGCGGGAGCAGCCCATCCTTGAAAACCTGCTCCGGACCCGC
GACGCGCTGCTCCTAATCAAGCGGGATAAGTCCTCATATGTAAAGTCTCGCGATGTCCTACCGCTTTATGAGGAA
GTGATCGCAGAAGTCGAGAAACTCAATTCCGTTCGTAAAGAGCAAGATCGCCGCTTGGTACACAATCGCCGTGAG
TTTAGTAGACCTTGCGCTCGACTTGGAGGTGACTGACGTTCAATGATAGTGGATTATATCTTGGATGATTGCTTT
CAGTTGATTTCCCTACTGTTCTTGACAGTTGGGAAGAACAACGAAGCTCCCGCAGTGTGAGCGATAATGTTATTA
CCCCGCCATCTTGTGACAGTGACTGACATTTTGCCAGATACTCCTTGGCGACTACTATCCAGGTATTGACTCCTA
TAATCTCCTTCGGCTCTCGTTAGCTTTGCGCGCTGGGTACTGACGATCTTGCAGCGTTTACTCGACCACCTTGAA
GAGGCTGGATTTTATAGCTCGAAGGACTTGAACTCGATCACCAAGACACTAGAGTCTACACGGGAAACTCTCGAG
CGTGGCCGAAACACATACTCACCCGCTCTCCTCACGCTTTTGGAAAGCCGTCTGGAACACTGTGACCAGTCACTG
GCGAAGTTGCAGAAGGGTCTTGCTGTATTGGCTCCTTCCTTGGTGCAGACACACGAGACACTGGTCTCAATTCTG
CGGTCTACATCAGCTGTCAACACTCGGTCAAAAGTATGGCATCGAACAATTCTATAACCCATCTGATTAGTACTA
ACTCACTGTTAATTGCTAGTTCTCGGCTGCGGAGGTAAATTCTCTTCGAGAACAACTGAAGAAAATTGAAAAGAC
GGCAAAGGACGGCAACTTTGTTGACGACGAGGGAAATGTTCTTGCCGGGCAGGAAAATGTCAAGTCTTTGATTCA
CAGGTGTTGGCGATGGACTGAAATTGTGCTTGAGCGGTATGTTCTAGGCTGCCAACGGGATGACAGACATCGACT
GATTCAAATACAGAGAGGGCAAAATTGATGAGCGGTTCCGAGATCAATACGAACGATTGTTGGACATCCGCAACC
AACTGGATCGTTTGTCTGTAACACAAGCTTGGTCGCTGCGCGAGACCGATCTCTTCGTATACCAGCGAAAGCTCG
ACCGAATTGACGAGGCACGGGTTAATGGAAATTTCATCGATGCTGAGGGTCAGCCGGCGGACCTGCATGCGCAGC
GAGTAAGATTTTATTTTCGGGCATTCTTTGGTGGATTCTGGCTAACATGATCAGACGCTTCTATACCTCATTCGT
CGCAGTTATGCATACATCTATGCGCTTTTGATTTCATCAGAGCCGGTATCTGAAGCTTTACTCCCAGTCTACAAC
CAACTTCAAACTCTCCGCCGGTGCTTGATTGAAGTCAAGGAGTCTGGGGGTGTTGCAAATTCACGCGAACTTTAC
CCATACAGCATGAAGGTATGTAACCGTCCACGCTGCTTGCGTATAAAGCTAACAAAAACAGCTCAACTCGATTGA
CAACATGCGAGTTGACGGGAAATTCTACGTGGGTCCAGATATCCCAGAGGGACAGGGCTGTGTCAATAATCTGCT
AGCCGAATGCTACGATTTGGTTTGGGAGCTCCGTGCCGCTGTGGTTGGCGAGGAAGGAGAGTCTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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