© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2898.t1 |
| Gene name | |
| Location | scaffold_04:174483..176446 |
| Strand | + |
| Gene length (bp) | 1963 |
| Transcript length (bp) | 825 |
| Coding sequence length (bp) | 825 |
| Protein length (aa) | 275 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 42 | 61 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.62 | 0.00 | 1.48 |
| 5d_25C | Five days - 25 degrees Celsius | 0.28 | 0.00 | 0.84 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.80 | 0.00 | 1.89 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.04 | 0.00 | 0.23 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.71 | 0.00 | 1.69 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.38 | 0.04 | 4.72 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 0.820456 | no |
| 3d_25C | 7d_15C | 1.000000 | no |
| 3d_25C | 7d_30C | 0.067601 | no |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 0.334970 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.069739 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 0.927655 | no |
| 7d_25C | 7d_30C | 0.139968 | no |
| 7d_25C | 10d_25C | 0.356538 | no |
| 7d_15C | 7d_30C | 0.132409 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.356374 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2898.t1 MFWALGPRSKKKNVTSSTPLHGGATSSTSLIRKNHSRAQVEIRFKYPVGAVIILVLLFFSYGSCWGAKIQRNPYE CPTLPENPDPAHEQRNPTSERLERPQFLCFLRETYSSNTLKVSNWEKKHRDTKTLQYIFIAYTTIQFSHDQKRDD MEVLHSIAEKAARRAGVQVYWLACSCKTWSAQPWLFGFEGYLPTHEIEALVIVVNMNRLAWTPYSSQLSRHCMVD GECIGRNPTEDPKVKRIVDSSAYATREAAGVSAPLWKRGWYAPRSTLFL* |
| Coding | >Pro_DTO377G3_2|g2898.t1 ATGTTCTGGGCTTTAGGGCCTCGCAGTAAAAAAAAAAACGTGACATCAAGCACCCCATTACACGGTGGAGCTACG TCCAGCACTTCCTTAATTCGAAAGAATCACTCAAGGGCGCAAGTGGAAATTCGGTTCAAATACCCAGTCGGCGCT GTCATAATTCTTGTTTTGCTATTTTTTTCTTACGGATCTTGCTGGGGAGCCAAGATACAACGCAATCCCTATGAA TGTCCAACACTGCCAGAAAACCCTGATCCAGCGCATGAGCAACGCAATCCTACCTCTGAACGTCTTGAAAGACCG CAATTTCTGTGTTTCCTACGCGAAACATATAGTAGCAACACCTTGAAGGTCAGTAACTGGGAGAAAAAACATAGA GACACAAAGACACTACAGTATATCTTTATTGCGTACACAACCATACAATTCTCGCATGACCAGAAGCGCGATGAC ATGGAAGTTCTACATTCTATTGCGGAGAAGGCAGCTCGTCGTGCAGGAGTTCAAGTCTATTGGCTTGCATGCAGC TGCAAAACTTGGTCTGCTCAACCCTGGCTCTTCGGATTCGAAGGCTACCTGCCCACCCACGAGATTGAAGCTCTT GTTATTGTAGTCAACATGAACCGTTTGGCTTGGACTCCGTACAGCAGTCAACTATCGCGCCACTGTATGGTTGAC GGAGAGTGTATTGGGAGAAACCCTACGGAAGACCCGAAAGTCAAGCGCATAGTTGATTCCAGTGCTTACGCTACC CGTGAGGCCGCCGGTGTCTCTGCTCCTCTGTGGAAGCGAGGGTGGTATGCACCGCGGTCTACTCTGTTCCTGTGA |
| Transcript | >Pro_DTO377G3_2|g2898.t1 ATGTTCTGGGCTTTAGGGCCTCGCAGTAAAAAAAAAAACGTGACATCAAGCACCCCATTACACGGTGGAGCTACG TCCAGCACTTCCTTAATTCGAAAGAATCACTCAAGGGCGCAAGTGGAAATTCGGTTCAAATACCCAGTCGGCGCT GTCATAATTCTTGTTTTGCTATTTTTTTCTTACGGATCTTGCTGGGGAGCCAAGATACAACGCAATCCCTATGAA TGTCCAACACTGCCAGAAAACCCTGATCCAGCGCATGAGCAACGCAATCCTACCTCTGAACGTCTTGAAAGACCG CAATTTCTGTGTTTCCTACGCGAAACATATAGTAGCAACACCTTGAAGGTCAGTAACTGGGAGAAAAAACATAGA GACACAAAGACACTACAGTATATCTTTATTGCGTACACAACCATACAATTCTCGCATGACCAGAAGCGCGATGAC ATGGAAGTTCTACATTCTATTGCGGAGAAGGCAGCTCGTCGTGCAGGAGTTCAAGTCTATTGGCTTGCATGCAGC TGCAAAACTTGGTCTGCTCAACCCTGGCTCTTCGGATTCGAAGGCTACCTGCCCACCCACGAGATTGAAGCTCTT GTTATTGTAGTCAACATGAACCGTTTGGCTTGGACTCCGTACAGCAGTCAACTATCGCGCCACTGTATGGTTGAC GGAGAGTGTATTGGGAGAAACCCTACGGAAGACCCGAAAGTCAAGCGCATAGTTGATTCCAGTGCTTACGCTACC CGTGAGGCCGCCGGTGTCTCTGCTCCTCTGTGGAAGCGAGGGTGGTATGCACCGCGGTCTACTCTGTTCCTGTGA |
| Gene | >Pro_DTO377G3_2|g2898.t1 ATGTTCTGGGCTTTAGGGCCTCGCAGTAAAAAAAAAAACGTGACATCAAGCACCCCATTACACGGTGGAGCTACG TCCAGCACTTCCTTAATTCGAAAGAATCACTCAAGGGCGCAAGTGGAAATTCGGTTCAAATACCCAGTCGGCGCT GTCATAATTCTTGTTTTGGTTTGTCTCCCATATTATTAACTTATTATTGTATCTTTAGTATGTTGACACCTGCTA AATAGCTATTTTTTTCTTACGGATCTTGCTGGGGAGCCAAGATACAACGGTCAATATGAGCCGTTTAGATATCAT TACTGGGGCTACACGCCCATTTCAAGCAATCCCTATGAATGTCCAACACTGCCAGAAAACCCTGATCCAGCGCAT GAGCAACGCAATCCTACCTCTGAACGTCTTGAAAGACCGCAATTTCTGTGTTTCCTACGCGAAACATATAGTAGC AACACCTTGAAGGTCAGTAACTGGGAGAAAAAACATAGAGACACAAAGACACTACAGTATATCTTTATTGCGTAC ACAACCATACAATTCTCGCATGACCAGAAGCGCGATGACATGGAAGTTCTACATTCTATTGCGGAGAAGGCAGCT CGTCGTGCAGGAGTTCAAGTCTATTGGCTTGCATGCAGCTGTATGCCTGAAGACAAATACCTGGCGGACGACGTA TATCGGATCAGCGATGTAGTACGTGGCGCACATTCGCTCGTCAATGCCGTTGGACCACCTGGTCAAGGCCATGAA TCCCGGGTTTACACCACGCGAGAGCTTCTCAAAGAATGGGGTCGGCGAATGTGGGCATTTCCCGAGGTCCTTCTA TCGCCAAATACGCATCCGATATTGATTTACACCCACGGCACATCCGAGGGAGAACCTTGGCAGAAACCCAAAAGC AAATTTCCTTCAGAGGCGTGGGTTGACGCCTCAAACTCACGCCAACTGGTCGGTCATTACGAAGGCTCCATCATG TTGAGTCCTCTAGAGCTTGTGACAATTGCATTCCAGTGCCTATCGACTAGGCCCTTGAAAGAAGAAAGCGAAGCA GATATAGCATATGTCTTTATGGGACTTCTGAGACGCAGGCCCAGAGTCAATCTTAGTGACAGCGCCTTTCAAGCT TTCTCGCGTCTTTCAATCAGTAATGATAGCGATAAATTGCTTGAAAGGCTTATATGTCTGCTTCTCAAATCAACC AAGCAGAAATGGTATGTCATCGACGACATATGGGATCGCAATTTATGGGATTTTGACCCCTTCTGTCCAGTCGTC GGTGTCTGCCTAGGAGATTCGGTTGTTCTCAGTGGGGCATTTGGAGCCTCTATTCGATGGAAATAATTCAAATCT GTGAGCCTGACCCATAGGAACACAGTTGAAGGGTTAATCACAACTTTGGCACTGCGCGCCGCACCTGTGTGGTTA ATCGTCTCAGCAGGCTTACTGTCTGCTAGTCAAACTACAGGGTGGAAGATGATGGTGGGAATTTATGCGCCACTT CGGCATCTAAAGCATTCCAAACAGCCGGCTGGATTTTTATGGGCATCACTATCCTTCTTGGCGCTCTTTCTCCCT TGATGGTATACTCGCGTTATGCAGGCAAAACTTGGTCTGCTCAACCCTGGCTCTTCGGATTCGAAGGCTACCTGC CCACCCACGAGATTGAAGCTCTTGTTATTGTAGTCAACATGAACCGTTTGGCTTGGACTCCGTACAGCAGTCAAC TATCGCGCCACTGTATGGTTGACGGAGAGTGTATTGGGAGAAACCCTACGGAAGACCCGAAAGTCAAGCGCATAG TTGATTCCAGTGCTTACGCTACGTACGAGGAACCAAAGGTTTTCACGTTGGTCGACACGTTTACAATGACGGTAA CACTATTTCAAGCCGTGAGGCCGCCGGTGTCTCTGCTCCTCTGTGGAAGCGAGGGTGGTATGCACCGCGGTCTAC TCTGTTCCTGTGA |