Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2897.t1
Gene name
Locationscaffold_04:171264..172781
Strand-
Gene length (bp)1517
Transcript length (bp)1098
Coding sequence length (bp)1098
Protein length (aa) 366

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01544 CorA CorA-like Mg2+ transporter protein 8.1E-07 240 305

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0055085 transmembrane transport Yes
GO:0030001 metal ion transport Yes
GO:0046873 metal ion transmembrane transporter activity Yes
GO:0022890 inorganic cation transmembrane transporter activity No
GO:0006810 transport No
GO:0008150 biological_process No
GO:0005575 cellular_component No
GO:0022857 transmembrane transporter activity No
GO:0051234 establishment of localization No
GO:0008324 cation transmembrane transporter activity No
GO:0003674 molecular_function No
GO:0006812 cation transport No
GO:0006811 ion transport No
GO:0015075 ion transmembrane transporter activity No
GO:0051179 localization No
GO:0015318 inorganic molecular entity transmembrane transporter activity No
GO:0005215 transporter activity No
GO:0110165 cellular anatomical entity No
GO:0009987 cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 25 0.45

Transmembrane Domains

Domain # Start End Length
1 245 267 22
2 287 309 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 3.62 0.64 6.59
5d_25C Five days - 25 degrees Celsius 5.41 1.46 9.37
7d_25C Seven days - 25 degrees Celsius 5.61 1.19 10.02
10d_25C Ten days - 25 degrees Celsius 3.40 0.31 6.49
7d_15C Seven days - 15 degrees Celsius 10.09 2.53 17.64
7d_30C Seven days - 30 degrees Celsius 14.13 5.60 22.65

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.414679 no
3d_25C 7d_25C 0.376071 no
3d_25C 7d_15C 0.018560 yes
3d_25C 7d_30C 0.001804 yes
3d_25C 10d_25C 0.934641 no
5d_25C 7d_25C 0.957569 no
5d_25C 7d_15C 0.142479 no
5d_25C 7d_30C 0.004840 yes
5d_25C 10d_25C 0.368087 no
7d_25C 7d_15C 0.180784 no
7d_25C 7d_30C 0.012303 yes
7d_25C 10d_25C 0.332544 no
7d_15C 7d_30C 0.445960 no
7d_15C 10d_25C 0.020393 yes
7d_30C 10d_25C 0.003625 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2897.t1
MSVNHSTNISYWRWIEPLGSETTASPPQPSLPGDESLPKPQELSRTELLQKDFLRKPGIHVILGWNANGLFGSTV
NFLQNDSETSYGTFSRFLSKRVKGKGAERTLNPGNSSNTNPLSTPAPDFEYAWHYMAFCTLWRSSLINPTGDSGQ
VRTDGSTDETNVLLCFDLDDDITLRLRRLLHKTDFRNWNNEPFLMLKYALNIVIEQCEDDLWSLCASNFVTVANS
NISKGILKQTRNEGKVLSDTVSALTLLFLPGTFISGFFGMNFFTLDENEKTQTLQWKTHPKIWIFFVCTIPITIL
GFFVFMLEFNLHAWIWRMQALIGGIFCRSRTSENIDSDNLGSLERSIGLPWKFWLSRRTTLRSTP*
Coding >Pro_DTO377G3_2|g2897.t1
ATGTCAGTAAATCACTCAACAAATATCAGCTACTGGCGATGGATAGAGCCTTTAGGCAGTGAGACAACTGCTAGC
CCGCCGCAACCATCCCTACCGGGAGACGAAAGTCTGCCAAAGCCTCAGGAACTAAGCCGGACTGAACTTTTGCAA
AAAGATTTCTTGAGAAAGCCAGGTATTCATGTTATACTGGGCTGGAACGCAAATGGCTTGTTCGGCAGTACTGTC
AATTTCTTACAAAACGACTCAGAAACGAGCTATGGGACATTTTCGCGCTTTCTTTCCAAACGAGTCAAGGGAAAG
GGCGCTGAAAGGACATTGAATCCAGGGAATTCTAGTAATACAAACCCTCTCTCCACCCCTGCGCCTGATTTTGAG
TACGCCTGGCACTATATGGCATTCTGTACCCTATGGCGGTCATCACTTATCAACCCTACTGGAGACAGTGGCCAA
GTGAGGACGGATGGATCTACCGACGAGACCAATGTGCTACTTTGCTTCGATCTTGATGATGATATTACCCTCCGG
CTAAGACGTCTGCTGCATAAAACCGATTTCAGAAACTGGAACAACGAACCCTTTCTCATGCTCAAGTATGCACTC
AATATCGTGATAGAGCAGTGTGAGGATGATCTCTGGAGCTTATGTGCCTCCAACTTCGTCACTGTTGCCAATAGC
AACATCTCGAAAGGCATTCTCAAGCAAACTCGGAATGAAGGCAAAGTCTTGTCCGATACCGTGTCCGCCTTAACG
CTTCTATTCCTGCCGGGAACTTTCATCTCAGGATTTTTCGGAATGAATTTCTTCACACTCGACGAGAACGAAAAA
ACCCAGACTCTACAGTGGAAGACACATCCAAAAATCTGGATCTTCTTCGTTTGCACAATCCCCATAACCATACTC
GGCTTCTTTGTTTTCATGCTGGAGTTCAACTTGCATGCTTGGATCTGGCGCATGCAAGCCCTCATAGGTGGCATT
TTCTGCCGAAGCAGAACATCCGAGAATATTGACTCTGATAACTTAGGATCTTTGGAACGGTCAATAGGGCTTCCG
TGGAAATTTTGGCTCTCCCGGCGTACTACTTTGCGCTCGACACCGTAA
Transcript >Pro_DTO377G3_2|g2897.t1
ATGTCAGTAAATCACTCAACAAATATCAGCTACTGGCGATGGATAGAGCCTTTAGGCAGTGAGACAACTGCTAGC
CCGCCGCAACCATCCCTACCGGGAGACGAAAGTCTGCCAAAGCCTCAGGAACTAAGCCGGACTGAACTTTTGCAA
AAAGATTTCTTGAGAAAGCCAGGTATTCATGTTATACTGGGCTGGAACGCAAATGGCTTGTTCGGCAGTACTGTC
AATTTCTTACAAAACGACTCAGAAACGAGCTATGGGACATTTTCGCGCTTTCTTTCCAAACGAGTCAAGGGAAAG
GGCGCTGAAAGGACATTGAATCCAGGGAATTCTAGTAATACAAACCCTCTCTCCACCCCTGCGCCTGATTTTGAG
TACGCCTGGCACTATATGGCATTCTGTACCCTATGGCGGTCATCACTTATCAACCCTACTGGAGACAGTGGCCAA
GTGAGGACGGATGGATCTACCGACGAGACCAATGTGCTACTTTGCTTCGATCTTGATGATGATATTACCCTCCGG
CTAAGACGTCTGCTGCATAAAACCGATTTCAGAAACTGGAACAACGAACCCTTTCTCATGCTCAAGTATGCACTC
AATATCGTGATAGAGCAGTGTGAGGATGATCTCTGGAGCTTATGTGCCTCCAACTTCGTCACTGTTGCCAATAGC
AACATCTCGAAAGGCATTCTCAAGCAAACTCGGAATGAAGGCAAAGTCTTGTCCGATACCGTGTCCGCCTTAACG
CTTCTATTCCTGCCGGGAACTTTCATCTCAGGATTTTTCGGAATGAATTTCTTCACACTCGACGAGAACGAAAAA
ACCCAGACTCTACAGTGGAAGACACATCCAAAAATCTGGATCTTCTTCGTTTGCACAATCCCCATAACCATACTC
GGCTTCTTTGTTTTCATGCTGGAGTTCAACTTGCATGCTTGGATCTGGCGCATGCAAGCCCTCATAGGTGGCATT
TTCTGCCGAAGCAGAACATCCGAGAATATTGACTCTGATAACTTAGGATCTTTGGAACGGTCAATAGGGCTTCCG
TGGAAATTTTGGCTCTCCCGGCGTACTACTTTGCGCTCGACACCGTAA
Gene >Pro_DTO377G3_2|g2897.t1
ATGTCAGTAAATCACTCAACAAATATCAGCTACTGGCGATGGATAGAGCCTTTAGGCAGTGAGACAACTGCTAGC
CCGCCGCAACCATCCCTACCGGGAGACGAAAGTCTGCCAAAGCCTCAGGAACTAAGCCGGACTGAACTTTTGCAA
AAAGATGTCAGTCAGAGGGAAAAAAACAAATGTATCATGGTAACTTGCTAATAGGTATCATATAGTTCTTGAGAA
AGCCAGGTATTCATGTTATGTGAGAACCACATCTCAGTTAGATTCTACGCTTGCTTATGTATCTCAGCTTCATGC
CAAAAGTGGAAGAAGGGATATTGAAGATGGCAGGGAGTGCAGATTTATGCAGGCAGTTGACTGAAAAGTTCTTCC
TTCCTAACTTCTTTTTTGAAAGACTGGGCTGGAACGCAAATGGCTTGTTCGGCAGTACTGTCAATTTCTTACAAA
ACGACTCAGAAACGAGCTATGGTAAGAAGAAAAACGTAGAGCTTATCATAGCCACCAAAAATTGCTAACAGGAAC
GCTCACAAAGGGACATTTTCGCGCTTTCTTTCCAAACGAGTCAAGGGAAAGGGCGCTGAAAGGACATTGAATCCA
GGGAATTCTAGTAATACAAACCCTCTCTCCACCCCTGCGCCTGATTTTGAGTACGCCTGGCACTATATGGCATTC
TGTACCCTATGGCGGTCATCACTTATCAACCCTACTGGAGACAGTGGCCAAGTGAGGACGGATGGATCTACCGAC
GAGACCAATGTGCTACTTTGCTTCGATCTTGATGATGATATTACCCTCCGGCTAAGACGTCTGCTGCATAAAACC
GATTTCAGAAACTGGAACAACGAACCCTTTCTCATGCTCAAGTATGCACTCAATATCGTGATAGAGCAGTGTGAG
GATGATCTCTGGAGCTTATGTGTTAGTGCCTCCTGCGAAAGAAGAATGGCTACCATTTGTGCTTCTTCGTCTTCT
TCTTTAAAGTAAAGGCAGTTAACAGAGTTCAATAGGCCTCCAACTTCGTCACTGTTGCCAATAGCAACATCTCGA
AAGGCATTCTCAAGCAAACTCGGAATGAAGGCAAAGTCTTGTCCGATACCGTGTCCGCCTTAACGCTTCTATTCC
TGCCGGGAACTTTCATCTCAGTAAGACCCTTATATCTAGAATTTGACCACGAGACATGCTGAAAATATTTGTAGG
GATTTTTCGGAATGAATTTCTTCACACTCGACGAGAACGAAAAAACCCAGACTCTACAGTGGAAGACACATCCAA
AAATCTGGATCTTCTTCGTTTGCACAATCCCCATAACCATACTCGGCTTCTTTGTTTTCATGCTGGAGTTCAACT
TGCATGCTTGGATCTGGCGCATGCAAGCCCTCATAGGTGGCATTTTCTGCCGAAGCAGAACATCCGAGAATATTG
ACTCTGATAACTTAGGATCTTTGGAACGGTCAATAGGGCTTCCGTGGAAATTTTGGCTCTCCCGGCGTACTACTT
TGCGCTCGACACCGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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