Protein ID | Pro_DTO377G3_2|g2894.t1 |
Gene name | |
Location | scaffold_04:160631..162990 |
Strand | + |
Gene length (bp) | 2359 |
Transcript length (bp) | 2307 |
Coding sequence length (bp) | 2307 |
Protein length (aa) | 769 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 4.3E-06 | 532 | 554 |
PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 7.0E-03 | 560 | 582 |
PF13894 | zf-C2H2_4 | C2H2-type zinc finger | 4.8E-04 | 532 | 554 |
PF13912 | zf-C2H2_6 | C2H2-type zinc finger | 4.3E-04 | 532 | 556 |
PF12874 | zf-met | Zinc-finger of C2H2 type | 2.5E-02 | 532 | 554 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 49 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
C2H2 zinc finger |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 27.40 | 16.17 | 38.63 |
5d_25C | Five days - 25 degrees Celsius | 23.47 | 13.58 | 33.36 |
7d_25C | Seven days - 25 degrees Celsius | 22.08 | 12.65 | 31.50 |
10d_25C | Ten days - 25 degrees Celsius | 18.05 | 9.95 | 26.16 |
7d_15C | Seven days - 15 degrees Celsius | 26.35 | 15.49 | 37.22 |
7d_30C | Seven days - 30 degrees Celsius | 22.72 | 12.99 | 32.44 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.579997 | no |
3d_25C | 7d_25C | 0.411873 | no |
3d_25C | 7d_15C | 0.911984 | no |
3d_25C | 7d_30C | 0.495185 | no |
3d_25C | 10d_25C | 0.078462 | no |
5d_25C | 7d_25C | 0.854926 | no |
5d_25C | 7d_15C | 0.695774 | no |
5d_25C | 7d_30C | 0.927469 | no |
5d_25C | 10d_25C | 0.316786 | no |
7d_25C | 7d_15C | 0.521994 | no |
7d_25C | 7d_30C | 0.937775 | no |
7d_25C | 10d_25C | 0.480026 | no |
7d_15C | 7d_30C | 0.606254 | no |
7d_15C | 10d_25C | 0.115508 | no |
7d_30C | 10d_25C | 0.404918 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g2894.t1 MTSHDQNHGTAYCPEHDQNHGAVYCSEDMKHRSISPSPHGQQYHDPNPGGLGVDPSSMAAYSTNLSYQNPDGSIG GAEIYGYPNYLTGAPLTQTLSPLGGQGYAPTINTNLPISQSFETSLVNQLEHSSTGMRRMQGDENFSNMLNSNHP ELDFSLYQNHSPNSASTPEYDSSLLLDPQMQQHQSINQAINPADLVSPISNPSVSSHPSQDQQHSSPGPMSPPGS TPGAYYTPRHSRHTSLDPATAAYLSAQSGPDWQSVMNNVSFQGHRRAPSEVSEVSSASHSPYLSQHEFDGIENNA SPSLIPQNDPNLYDNGLGMESFTLSEQHQQGISPLHSPYISPRLMPQQGNEMVPNNSYLTQFPSAPTDMYGMPQE DMMNMGQLNNIPGDIGQASQMAPPSINVEFAPPSRAPSFGPAKSTADFDSLSPPAMRSRVRSKSDPYHPASRPRS PATSAASLGPRAPATPRSLSPVGSIGSRSSPSSRDPSPSRSNRRLSTSSIENRNYILDLADPQRPGAVPGEPKRI QKHPATFQCTLCPKRFTRAYNLRSHLRTHTDERPFVCTVCGKAFARQHDRKRHEGLHSGEKKFVCRGELSRSGQW GCGRRFARADALGRHFRSEAGRVCIKPLLDEESRERDRVLLEHQQQQQQSPSGHLQPIPQPLVMPNMPGMDGQST GNFILPAALLAQYPALQTLQWDQISAVGDDPSDIGGRSSFDASSGGEFGFDEDDSGMGGYGNNQGGMYGVDNSGQ MLGVNSGDPGYSDQKWTG* |
Coding | >Pro_DTO377G3_2|g2894.t1 ATGACCTCCCATGACCAGAACCACGGCACGGCCTATTGTCCGGAGCATGACCAGAACCACGGCGCGGTCTATTGT TCGGAAGATATGAAGCATCGGAGCATAAGCCCTTCGCCGCACGGCCAACAATATCACGACCCCAACCCCGGTGGA TTAGGAGTTGACCCCTCCTCCATGGCCGCTTATTCCACAAACCTCTCCTATCAGAATCCCGACGGCAGCATTGGC GGTGCTGAGATATATGGATACCCAAACTACCTTACCGGGGCGCCTTTGACACAGACATTATCACCGCTGGGGGGC CAGGGCTATGCTCCAACCATCAATACCAACCTTCCGATATCGCAGTCGTTCGAGACAAGCCTGGTCAATCAGCTC GAGCACTCTTCGACGGGAATGAGACGGATGCAGGGCGATGAAAACTTCTCCAATATGCTCAACTCCAATCACCCA GAATTGGACTTCTCTCTCTACCAGAATCACAGCCCCAACAGCGCTTCCACCCCCGAGTACGATTCTTCGTTATTG CTAGACCCGCAAATGCAACAGCATCAGTCTATCAACCAAGCGATAAACCCCGCTGATCTAGTCAGCCCCATCTCC AATCCTTCTGTATCCTCGCATCCATCACAAGATCAGCAACATTCCTCACCTGGCCCCATGTCCCCTCCAGGGTCC ACGCCGGGTGCATACTATACCCCTCGGCATTCACGACACACTTCGCTTGACCCGGCTACTGCGGCGTATTTGAGC GCCCAGTCAGGTCCAGACTGGCAGTCGGTTATGAATAATGTTTCCTTCCAAGGCCATCGACGTGCACCGTCCGAG GTGTCCGAAGTATCGTCGGCCAGCCACTCCCCTTATTTGTCTCAGCACGAATTCGATGGCATTGAGAACAATGCA TCGCCTTCTTTGATTCCCCAAAATGATCCAAATCTTTACGACAATGGCCTAGGCATGGAATCATTTACGTTATCG GAACAGCATCAGCAGGGGATCAGTCCTCTCCACAGCCCATATATCTCTCCGCGGTTGATGCCACAACAGGGGAAT GAGATGGTGCCGAATAATTCATATCTCACTCAGTTCCCCTCTGCGCCGACAGACATGTACGGAATGCCCCAAGAA GACATGATGAACATGGGCCAATTGAATAACATCCCGGGCGACATTGGTCAAGCTTCACAGATGGCTCCTCCATCG ATCAATGTTGAGTTTGCCCCGCCATCACGAGCTCCAAGCTTCGGCCCAGCCAAATCAACGGCAGACTTTGACTCA CTGAGCCCTCCGGCTATGCGATCCCGTGTTCGTAGCAAATCTGATCCTTATCACCCTGCTTCCCGCCCACGCTCT CCTGCAACTTCAGCAGCTTCTCTAGGGCCCCGCGCACCTGCCACCCCACGATCTTTGTCCCCTGTTGGATCGATT GGTTCGCGCAGTAGTCCCAGTTCGCGAGATCCCTCGCCCTCACGATCAAACCGACGCCTCTCCACCTCATCAATC GAGAACCGGAACTACATCCTAGATCTCGCCGATCCACAAAGGCCCGGAGCAGTACCCGGGGAGCCAAAAAGAATT CAGAAACACCCAGCTACCTTCCAGTGCACCCTATGTCCGAAACGGTTTACCCGCGCATACAACCTGCGATCCCAC CTCCGCACCCACACCGACGAACGACCATTTGTGTGCACAGTATGCGGCAAAGCATTCGCACGGCAGCACGACCGC AAACGCCACGAAGGCCTCCATTCCGGCGAAAAGAAATTCGTCTGCCGCGGCGAGCTCTCGCGAAGCGGACAATGG GGCTGCGGCCGCCGCTTCGCCCGTGCGGACGCTTTGGGCCGCCACTTCCGCTCCGAGGCGGGCCGGGTATGCATC AAGCCTCTTCTGGATGAGGAATCGCGAGAGCGTGACCGCGTCTTGCTAGAGCACCAGCAGCAACAGCAACAATCG CCATCCGGCCATCTCCAGCCAATCCCCCAGCCGCTCGTTATGCCCAACATGCCCGGCATGGATGGGCAATCGACG GGCAACTTTATTCTTCCTGCTGCTCTTCTGGCGCAATACCCGGCTTTGCAGACATTGCAGTGGGACCAGATTTCG GCTGTGGGTGATGATCCGAGTGATATTGGTGGGCGGAGTAGCTTTGATGCTAGCTCTGGTGGAGAATTTGGCTTT GACGAGGATGATTCGGGGATGGGCGGTTATGGTAATAACCAAGGGGGTATGTACGGTGTCGATAACTCTGGTCAG ATGCTGGGGGTCAATTCTGGGGACCCTGGGTACTCTGATCAGAAGTGGACTGGATGA |
Transcript | >Pro_DTO377G3_2|g2894.t1 ATGACCTCCCATGACCAGAACCACGGCACGGCCTATTGTCCGGAGCATGACCAGAACCACGGCGCGGTCTATTGT TCGGAAGATATGAAGCATCGGAGCATAAGCCCTTCGCCGCACGGCCAACAATATCACGACCCCAACCCCGGTGGA TTAGGAGTTGACCCCTCCTCCATGGCCGCTTATTCCACAAACCTCTCCTATCAGAATCCCGACGGCAGCATTGGC GGTGCTGAGATATATGGATACCCAAACTACCTTACCGGGGCGCCTTTGACACAGACATTATCACCGCTGGGGGGC CAGGGCTATGCTCCAACCATCAATACCAACCTTCCGATATCGCAGTCGTTCGAGACAAGCCTGGTCAATCAGCTC GAGCACTCTTCGACGGGAATGAGACGGATGCAGGGCGATGAAAACTTCTCCAATATGCTCAACTCCAATCACCCA GAATTGGACTTCTCTCTCTACCAGAATCACAGCCCCAACAGCGCTTCCACCCCCGAGTACGATTCTTCGTTATTG CTAGACCCGCAAATGCAACAGCATCAGTCTATCAACCAAGCGATAAACCCCGCTGATCTAGTCAGCCCCATCTCC AATCCTTCTGTATCCTCGCATCCATCACAAGATCAGCAACATTCCTCACCTGGCCCCATGTCCCCTCCAGGGTCC ACGCCGGGTGCATACTATACCCCTCGGCATTCACGACACACTTCGCTTGACCCGGCTACTGCGGCGTATTTGAGC GCCCAGTCAGGTCCAGACTGGCAGTCGGTTATGAATAATGTTTCCTTCCAAGGCCATCGACGTGCACCGTCCGAG GTGTCCGAAGTATCGTCGGCCAGCCACTCCCCTTATTTGTCTCAGCACGAATTCGATGGCATTGAGAACAATGCA TCGCCTTCTTTGATTCCCCAAAATGATCCAAATCTTTACGACAATGGCCTAGGCATGGAATCATTTACGTTATCG GAACAGCATCAGCAGGGGATCAGTCCTCTCCACAGCCCATATATCTCTCCGCGGTTGATGCCACAACAGGGGAAT GAGATGGTGCCGAATAATTCATATCTCACTCAGTTCCCCTCTGCGCCGACAGACATGTACGGAATGCCCCAAGAA GACATGATGAACATGGGCCAATTGAATAACATCCCGGGCGACATTGGTCAAGCTTCACAGATGGCTCCTCCATCG ATCAATGTTGAGTTTGCCCCGCCATCACGAGCTCCAAGCTTCGGCCCAGCCAAATCAACGGCAGACTTTGACTCA CTGAGCCCTCCGGCTATGCGATCCCGTGTTCGTAGCAAATCTGATCCTTATCACCCTGCTTCCCGCCCACGCTCT CCTGCAACTTCAGCAGCTTCTCTAGGGCCCCGCGCACCTGCCACCCCACGATCTTTGTCCCCTGTTGGATCGATT GGTTCGCGCAGTAGTCCCAGTTCGCGAGATCCCTCGCCCTCACGATCAAACCGACGCCTCTCCACCTCATCAATC GAGAACCGGAACTACATCCTAGATCTCGCCGATCCACAAAGGCCCGGAGCAGTACCCGGGGAGCCAAAAAGAATT CAGAAACACCCAGCTACCTTCCAGTGCACCCTATGTCCGAAACGGTTTACCCGCGCATACAACCTGCGATCCCAC CTCCGCACCCACACCGACGAACGACCATTTGTGTGCACAGTATGCGGCAAAGCATTCGCACGGCAGCACGACCGC AAACGCCACGAAGGCCTCCATTCCGGCGAAAAGAAATTCGTCTGCCGCGGCGAGCTCTCGCGAAGCGGACAATGG GGCTGCGGCCGCCGCTTCGCCCGTGCGGACGCTTTGGGCCGCCACTTCCGCTCCGAGGCGGGCCGGGTATGCATC AAGCCTCTTCTGGATGAGGAATCGCGAGAGCGTGACCGCGTCTTGCTAGAGCACCAGCAGCAACAGCAACAATCG CCATCCGGCCATCTCCAGCCAATCCCCCAGCCGCTCGTTATGCCCAACATGCCCGGCATGGATGGGCAATCGACG GGCAACTTTATTCTTCCTGCTGCTCTTCTGGCGCAATACCCGGCTTTGCAGACATTGCAGTGGGACCAGATTTCG GCTGTGGGTGATGATCCGAGTGATATTGGTGGGCGGAGTAGCTTTGATGCTAGCTCTGGTGGAGAATTTGGCTTT GACGAGGATGATTCGGGGATGGGCGGTTATGGTAATAACCAAGGGGGTATGTACGGTGTCGATAACTCTGGTCAG ATGCTGGGGGTCAATTCTGGGGACCCTGGGTACTCTGATCAGAAGTGGACTGGATGA |
Gene | >Pro_DTO377G3_2|g2894.t1 ATGACCTCCCATGACCAGAACCACGGCACGGCCTATTGTCCGGAGCATGACCAGAACCACGGCGCGGTCTATTGT TCGGAAGATATGAAGCATCGGAGCATAAGCCCTTCGCCGCACGGCCAACAATATCACGACCCCAACCCCGGTGGA TTAGGAGTTGACCCCTCCTCCATGGCCGCTTATTCCACAAACCTCTCCTATCAGAATCCCGACGGCAGCATTGGC GGTGCTGAGATATATGGATACCCAAACTACCTTACCGGGGCGCCTTTGACACAGACATTATCACCGCTGGGGGGC CAGGGCTATGCTCCAACCATCAATACCAACCTTCCGATATCGCAGTCGTTCGAGACAAGCCTGGTCAATCAGCTC GAGCACTCTTCGACGGGAATGAGACGGATGCAGGGCGATGAAAACTTCTCCAATATGCTCAACTCCAATCACCCA GAATTGGACTTCTCTCTCTACCAGAATCACAGCCCCAACAGCGCTTCCACCCCCGAGTACGATTCTTCGTTATTG CTAGACCCGCAAATGCAACAGCATCAGTCTATCAACCAAGCGATAAACCCCGCTGATCTAGTCAGCCCCATCTCC AATCCTTCTGTATCCTCGCATCCATCACAAGATCAGCAACATTCCTCACCTGGCCCCATGTCCCCTCCAGGGTCC ACGCCGGGTGCATACTATACCCCTCGGCATTCACGACACACTTCGCTTGACCCGGCTACTGCGGCGTATTTGAGC GCCCAGTCAGGTCCAGACTGGCAGTCGGTTATGAATAATGTTTCCTTCCAAGGCCATCGACGTGCACCGTCCGAG GTGTCCGAAGTATCGTCGGCCAGCCACTCCCCTTATTTGTCTCAGCACGAATTCGATGGCATTGAGAACAATGCA TCGCCTTCTTTGATTCCCCAAAATGATCCAAATCTTTACGACAATGGCCTAGGCATGGAATCATTTACGTTATCG GAACAGCATCAGCAGGGGATCAGTCCTCTCCACAGCCCATATATCTCTCCGCGGTTGATGCCACAACAGGGGAAT GAGATGGTGCCGAATAATTCATATCTCACTCAGTTCCCCTCTGCGCCGACAGACATGTACGGAATGCCCCAAGAA GACATGATGAACATGGGCCAATTGAATAACATCCCGGGCGACATTGGTCAAGCTTCACAGATGGCTCCTCCATCG ATCAATGTTGAGTTTGCCCCGCCATCACGAGCTCCAAGCTTCGGCCCAGCCAAATCAACGGCAGACTTTGACTCA CTGAGCCCTCCGGCTATGCGTAAGTGACGATTTACAACAGTTTGATTCGTACGATACTAAACAGAACTTAGGATC CCGTGTTCGTAGCAAATCTGATCCTTATCACCCTGCTTCCCGCCCACGCTCTCCTGCAACTTCAGCAGCTTCTCT AGGGCCCCGCGCACCTGCCACCCCACGATCTTTGTCCCCTGTTGGATCGATTGGTTCGCGCAGTAGTCCCAGTTC GCGAGATCCCTCGCCCTCACGATCAAACCGACGCCTCTCCACCTCATCAATCGAGAACCGGAACTACATCCTAGA TCTCGCCGATCCACAAAGGCCCGGAGCAGTACCCGGGGAGCCAAAAAGAATTCAGAAACACCCAGCTACCTTCCA GTGCACCCTATGTCCGAAACGGTTTACCCGCGCATACAACCTGCGATCCCACCTCCGCACCCACACCGACGAACG ACCATTTGTGTGCACAGTATGCGGCAAAGCATTCGCACGGCAGCACGACCGCAAACGCCACGAAGGCCTCCATTC CGGCGAAAAGAAATTCGTCTGCCGCGGCGAGCTCTCGCGAAGCGGACAATGGGGCTGCGGCCGCCGCTTCGCCCG TGCGGACGCTTTGGGCCGCCACTTCCGCTCCGAGGCGGGCCGGGTATGCATCAAGCCTCTTCTGGATGAGGAATC GCGAGAGCGTGACCGCGTCTTGCTAGAGCACCAGCAGCAACAGCAACAATCGCCATCCGGCCATCTCCAGCCAAT CCCCCAGCCGCTCGTTATGCCCAACATGCCCGGCATGGATGGGCAATCGACGGGCAACTTTATTCTTCCTGCTGC TCTTCTGGCGCAATACCCGGCTTTGCAGACATTGCAGTGGGACCAGATTTCGGCTGTGGGTGATGATCCGAGTGA TATTGGTGGGCGGAGTAGCTTTGATGCTAGCTCTGGTGGAGAATTTGGCTTTGACGAGGATGATTCGGGGATGGG CGGTTATGGTAATAACCAAGGGGGTATGTACGGTGTCGATAACTCTGGTCAGATGCTGGGGGTCAATTCTGGGGA CCCTGGGTACTCTGATCAGAAGTGGACTGGATGA |