© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2889.t1 |
| Gene name | |
| Location | scaffold_04:143250..144590 |
| Strand | + |
| Gene length (bp) | 1340 |
| Transcript length (bp) | 1227 |
| Coding sequence length (bp) | 1227 |
| Protein length (aa) | 409 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01264 | Chorismate_synt | Chorismate synthase | 2.7E-140 | 8 | 375 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004107 | chorismate synthase activity | Yes |
| GO:0009073 | aromatic amino acid family biosynthetic process | Yes |
| GO:0009058 | biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006520 | cellular amino acid metabolic process | No |
| GO:0016835 | carbon-oxygen lyase activity | No |
| GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0016053 | organic acid biosynthetic process | No |
| GO:0044283 | small molecule biosynthetic process | No |
| GO:0016829 | lyase activity | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0009072 | aromatic amino acid family metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 44.40 | 25.32 | 63.47 |
| 5d_25C | Five days - 25 degrees Celsius | 35.10 | 19.08 | 51.12 |
| 7d_25C | Seven days - 25 degrees Celsius | 27.51 | 14.08 | 40.94 |
| 10d_25C | Ten days - 25 degrees Celsius | 16.57 | 7.19 | 25.95 |
| 7d_15C | Seven days - 15 degrees Celsius | 45.55 | 25.96 | 65.15 |
| 7d_30C | Seven days - 30 degrees Celsius | 26.20 | 13.26 | 39.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.388448 | no |
| 3d_25C | 7d_25C | 0.050710 | no |
| 3d_25C | 7d_15C | 0.944987 | no |
| 3d_25C | 7d_30C | 0.028871 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.402962 | no |
| 5d_25C | 7d_15C | 0.321481 | no |
| 5d_25C | 7d_30C | 0.293757 | no |
| 5d_25C | 10d_25C | 0.006742 | yes |
| 7d_25C | 7d_15C | 0.041414 | yes |
| 7d_25C | 7d_30C | 0.907413 | no |
| 7d_25C | 10d_25C | 0.075175 | no |
| 7d_15C | 7d_30C | 0.021163 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.113116 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2889.t1 MSTWGQYFRVTTYGESHCRSVGCIVDGCPPGLELTEADIQPQMTRRRPGQSALTTPRDEKDRVEIQSGTEFGITL GTPIAMVVRNEDQRPKDYGGSTMDLYPRPSHADFTYLEKYGVKASSGGGRSSARETIGRVAAGAIAEKFLSLAHN IEIVAFVSSVGNEHLFPPTPEHPSPSTNPEFLKLIETIDRKTVDTFSPIRCPETEAAARMTKVIEKFRDNHDSIG GTVTCVIRNVPVGLGEPCFDKLEAKLGHAMLSIPATKGFEIGSGFGGCEVPGSIHNDPFVVNTSETGSPRLTTKT NNSGGIQGGISNGASIYFRVAFKPAATIGQAQTTTSYSGEEGVLEAKGRHDPCVTPRAVPIVEAMSSLVIMDALM AQYAREGAKNLLPQKAQTIRTSPTTAPNGAPSL* |
| Coding | >Pro_DTO377G3_2|g2889.t1 ATGTCGACGTGGGGTCAATATTTCCGTGTCACCACTTATGGCGAGTCGCACTGTCGCTCTGTCGGCTGCATCGTC GATGGATGTCCTCCGGGATTGGAACTCACCGAGGCCGACATTCAGCCCCAAATGACCCGGCGCCGTCCTGGCCAA AGCGCTCTCACTACCCCGCGGGATGAGAAGGACCGAGTCGAGATCCAGTCAGGCACAGAGTTCGGTATCACTCTT GGTACACCAATTGCCATGGTCGTCCGCAATGAGGACCAGCGCCCCAAGGACTACGGCGGCAGCACAATGGACCTG TACCCTCGCCCTAGCCATGCCGACTTCACCTACCTTGAGAAGTACGGCGTCAAGGCCAGCAGCGGTGGTGGTCGC AGCAGTGCCCGTGAGACCATTGGCCGTGTCGCTGCCGGCGCCATCGCCGAGAAATTCCTCAGCCTGGCCCATAAC ATCGAGATCGTCGCCTTCGTATCCTCCGTCGGCAACGAGCACCTCTTCCCCCCAACCCCCGAGCACCCCTCCCCC TCCACGAACCCAGAGTTCCTTAAGCTGATTGAGACGATTGACCGCAAAACCGTCGACACCTTCTCGCCCATCCGA TGCCCGGAAACCGAGGCTGCTGCGCGCATGACCAAAGTCATCGAGAAGTTCCGCGACAACCACGACAGCATCGGT GGAACCGTAACATGCGTGATCCGCAACGTGCCTGTGGGACTAGGTGAGCCCTGCTTCGATAAGCTTGAAGCCAAG CTCGGCCACGCGATGCTCAGCATCCCCGCAACCAAGGGCTTCGAGATCGGCTCCGGCTTCGGTGGCTGCGAGGTC CCCGGCTCAATCCACAACGACCCCTTCGTCGTCAACACGTCTGAAACCGGCAGCCCTCGCCTCACCACCAAGACT AACAACTCTGGCGGTATCCAGGGTGGTATCTCCAACGGCGCGTCCATCTACTTCCGCGTCGCGTTCAAGCCCGCT GCTACTATCGGCCAGGCGCAGACCACTACTTCTTACAGCGGTGAAGAGGGTGTCCTGGAGGCGAAGGGTCGTCAT GATCCTTGTGTTACCCCCCGTGCTGTCCCTATTGTCGAGGCTATGTCGTCGCTGGTTATCATGGACGCACTCATG GCTCAGTATGCCCGCGAGGGCGCCAAGAACTTGCTTCCCCAGAAGGCTCAGACTATTCGTACTAGTCCTACTACC GCGCCCAATGGTGCTCCTTCGTTGTAG |
| Transcript | >Pro_DTO377G3_2|g2889.t1 ATGTCGACGTGGGGTCAATATTTCCGTGTCACCACTTATGGCGAGTCGCACTGTCGCTCTGTCGGCTGCATCGTC GATGGATGTCCTCCGGGATTGGAACTCACCGAGGCCGACATTCAGCCCCAAATGACCCGGCGCCGTCCTGGCCAA AGCGCTCTCACTACCCCGCGGGATGAGAAGGACCGAGTCGAGATCCAGTCAGGCACAGAGTTCGGTATCACTCTT GGTACACCAATTGCCATGGTCGTCCGCAATGAGGACCAGCGCCCCAAGGACTACGGCGGCAGCACAATGGACCTG TACCCTCGCCCTAGCCATGCCGACTTCACCTACCTTGAGAAGTACGGCGTCAAGGCCAGCAGCGGTGGTGGTCGC AGCAGTGCCCGTGAGACCATTGGCCGTGTCGCTGCCGGCGCCATCGCCGAGAAATTCCTCAGCCTGGCCCATAAC ATCGAGATCGTCGCCTTCGTATCCTCCGTCGGCAACGAGCACCTCTTCCCCCCAACCCCCGAGCACCCCTCCCCC TCCACGAACCCAGAGTTCCTTAAGCTGATTGAGACGATTGACCGCAAAACCGTCGACACCTTCTCGCCCATCCGA TGCCCGGAAACCGAGGCTGCTGCGCGCATGACCAAAGTCATCGAGAAGTTCCGCGACAACCACGACAGCATCGGT GGAACCGTAACATGCGTGATCCGCAACGTGCCTGTGGGACTAGGTGAGCCCTGCTTCGATAAGCTTGAAGCCAAG CTCGGCCACGCGATGCTCAGCATCCCCGCAACCAAGGGCTTCGAGATCGGCTCCGGCTTCGGTGGCTGCGAGGTC CCCGGCTCAATCCACAACGACCCCTTCGTCGTCAACACGTCTGAAACCGGCAGCCCTCGCCTCACCACCAAGACT AACAACTCTGGCGGTATCCAGGGTGGTATCTCCAACGGCGCGTCCATCTACTTCCGCGTCGCGTTCAAGCCCGCT GCTACTATCGGCCAGGCGCAGACCACTACTTCTTACAGCGGTGAAGAGGGTGTCCTGGAGGCGAAGGGTCGTCAT GATCCTTGTGTTACCCCCCGTGCTGTCCCTATTGTCGAGGCTATGTCGTCGCTGGTTATCATGGACGCACTCATG GCTCAGTATGCCCGCGAGGGCGCCAAGAACTTGCTTCCCCAGAAGGCTCAGACTATTCGTACTAGTCCTACTACC GCGCCCAATGGTGCTCCTTCGTTGTAG |
| Gene | >Pro_DTO377G3_2|g2889.t1 ATGTCGACGTGGGGTCAATATTTCCGTGTCACCACGTAGGTTACCCACCCCTCACAAAACACATTGTTACTGACA CCCACAATTTAGTTATGGCGAGTCGCACTGTCGCTCTGTCGGCTGCATCGTCGATGGATGTCCTCCGGGATTGGA ACTCACCGAGGCCGACATTCAGCCCCAAATGACCCGGCGCCGTCCTGGCCAAAGCGCTCTCACTACCCCGCGGGA TGAGAAGGACCGAGTCGAGATCCAGTCAGGCACAGAGTTCGGTATCACTCTTGGTACACCAATTGCCATGGTCGT CCGCAATGAGGACCAGCGCCCCAAGGACTACGGCGGCAGCACAATGGACCTGTACCCTCGCCCTAGCCATGCCGA CTTCACCTACCTTGAGAAGTACGGCGTCAAGGCCAGCAGCGGTGGTGGTCGCAGCAGTGCCCGTGAGACCATTGG TACGTCATGTGTAACTATCAACGCCAGAAGCGATTACTCTTGCTAATCCAATTCCCACAGGCCGTGTCGCTGCCG GCGCCATCGCCGAGAAATTCCTCAGCCTGGCCCATAACATCGAGATCGTCGCCTTCGTATCCTCCGTCGGCAACG AGCACCTCTTCCCCCCAACCCCCGAGCACCCCTCCCCCTCCACGAACCCAGAGTTCCTTAAGCTGATTGAGACGA TTGACCGCAAAACCGTCGACACCTTCTCGCCCATCCGATGCCCGGAAACCGAGGCTGCTGCGCGCATGACCAAAG TCATCGAGAAGTTCCGCGACAACCACGACAGCATCGGTGGAACCGTAACATGCGTGATCCGCAACGTGCCTGTGG GACTAGGTGAGCCCTGCTTCGATAAGCTTGAAGCCAAGCTCGGCCACGCGATGCTCAGCATCCCCGCAACCAAGG GCTTCGAGATCGGCTCCGGCTTCGGTGGCTGCGAGGTCCCCGGCTCAATCCACAACGACCCCTTCGTCGTCAACA CGTCTGAAACCGGCAGCCCTCGCCTCACCACCAAGACTAACAACTCTGGCGGTATCCAGGGTGGTATCTCCAACG GCGCGTCCATCTACTTCCGCGTCGCGTTCAAGCCCGCTGCTACTATCGGCCAGGCGCAGACCACTACTTCTTACA GCGGTGAAGAGGGTGTCCTGGAGGCGAAGGGTCGTCATGATCCTTGTGTTACCCCCCGTGCTGTCCCTATTGTCG AGGCTATGTCGTCGCTGGTTATCATGGACGCACTCATGGCTCAGTATGCCCGCGAGGGCGCCAAGAACTTGCTTC CCCAGAAGGCTCAGACTATTCGTACTAGTCCTACTACCGCGCCCAATGGTGCTCCTTCGTTGTAG |