© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2862.t1 |
| Gene name | |
| Location | scaffold_04:63842..65599 |
| Strand | - |
| Gene length (bp) | 1757 |
| Transcript length (bp) | 1422 |
| Coding sequence length (bp) | 1422 |
| Protein length (aa) | 474 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.6E-15 | 41 | 388 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 7.9E-06 | 88 | 224 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 32 | 51 | 19 |
| 2 | 71 | 93 | 22 |
| 3 | 100 | 122 | 22 |
| 4 | 165 | 187 | 22 |
| 5 | 200 | 222 | 22 |
| 6 | 255 | 277 | 22 |
| 7 | 314 | 336 | 22 |
| 8 | 346 | 368 | 22 |
| 9 | 375 | 397 | 22 |
| 10 | 407 | 429 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.09 | 0.38 | 3.79 |
| 5d_25C | Five days - 25 degrees Celsius | 1.12 | 0.08 | 2.15 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.20 | 0.01 | 2.40 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.67 | 0.00 | 1.44 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.41 | 0.04 | 2.77 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.37 | 0.47 | 4.26 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.217002 | no |
| 3d_25C | 7d_25C | 0.329624 | no |
| 3d_25C | 7d_15C | 0.508024 | no |
| 3d_25C | 7d_30C | 0.845505 | no |
| 3d_25C | 10d_25C | 0.043201 | yes |
| 5d_25C | 7d_25C | 0.929196 | no |
| 5d_25C | 7d_15C | 0.745851 | no |
| 5d_25C | 7d_30C | 0.120895 | no |
| 5d_25C | 10d_25C | 0.429485 | no |
| 7d_25C | 7d_15C | 0.847642 | no |
| 7d_25C | 7d_30C | 0.212879 | no |
| 7d_25C | 10d_25C | 0.393825 | no |
| 7d_15C | 7d_30C | 0.351332 | no |
| 7d_15C | 10d_25C | 0.246768 | no |
| 7d_30C | 10d_25C | 0.023923 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2862.t1 MGVKEFLKSRSGLRVDNRATTSAATLTLRQSLWPLTLVTTLFFLWGFAYGLLDTLNSHFQKTLHIDRGRSAGLQA AYFGAYPLASLGYANWILRNYGYKTVFIFGLCLYGIGALCMWPAGLNQSFGGFCGATLVIGSGLGSLETAANPYL TVCGPPRYSEIRINFAQAFNAIGTVVGPVLGSYVFFTETEDDVAALQRVQWVYLAIGVFVFLLAGVFFLSNIPEV TDEDMAFQVTQTHVDEQDKPFWKQYKLFHATLAQFTYTGAQVAIAGYFINYVKDTWTGTSSATAAKYLAGAQGAF AVGRFFGSGIMKFVRARWVFLLYLTCTVAFLAASVTQTKQVGLAMLFMTLFFESVCFPTIMALGIRGLGRHYKRG SGFIVAGVSGGAVVPPILGHVADMHDNTGFAFIVPTMFMVVAWTYAIAVNFVPSYTDTVDRIGGSDVGLESQNIK DEEAVMDSHDIDDEKHQAVHLER* |
| Coding | >Pro_DTO377G3_2|g2862.t1 ATGGGCGTCAAGGAATTCCTCAAAAGCCGTTCGGGCTTGCGTGTTGATAATCGTGCGACTACTTCTGCTGCTACT CTGACTCTACGACAGAGTCTGTGGCCCTTGACCCTAGTCACGACCTTATTCTTCTTATGGGGCTTTGCGTATGGT TTGCTGGACACCCTCAACTCACATTTCCAGAAAACCCTACATATCGACCGTGGCCGCTCAGCTGGTCTTCAAGCA GCCTACTTTGGCGCATACCCCTTAGCCTCCCTCGGCTACGCAAACTGGATCCTCCGCAACTACGGCTACAAGACC GTCTTCATCTTCGGTCTGTGCCTATACGGTATTGGAGCCCTGTGCATGTGGCCCGCAGGTTTAAACCAATCCTTC GGCGGCTTCTGTGGTGCCACATTAGTCATTGGCTCGGGACTGGGGTCTCTTGAGACAGCGGCTAATCCCTACCTA ACCGTCTGCGGTCCGCCCCGCTATTCTGAGATCAGAATCAACTTTGCCCAGGCCTTCAATGCAATCGGCACAGTC GTCGGCCCCGTTCTGGGCTCTTATGTCTTCTTCACCGAGACAGAGGACGATGTAGCAGCCCTGCAGCGCGTGCAG TGGGTCTACCTCGCCATCGGGGTCTTCGTTTTCTTGCTCGCCGGCGTATTCTTCCTCTCCAATATTCCCGAAGTC ACAGACGAGGACATGGCCTTCCAGGTGACGCAGACGCATGTGGACGAGCAGGATAAGCCTTTCTGGAAACAGTAC AAGCTTTTCCATGCGACACTGGCGCAATTCACGTATACAGGCGCGCAGGTCGCTATCGCAGGCTATTTCATCAAC TACGTCAAAGATACCTGGACGGGTACATCTAGCGCCACAGCAGCGAAGTACCTCGCTGGGGCACAGGGCGCATTC GCAGTCGGCAGATTTTTCGGCTCGGGCATTATGAAATTCGTGCGGGCGCGCTGGGTCTTCCTGCTGTATTTAACG TGCACGGTAGCGTTCCTCGCTGCGTCGGTCACGCAGACCAAGCAGGTTGGTCTCGCTATGCTGTTCATGACGCTC TTCTTTGAGTCTGTTTGCTTCCCGACGATCATGGCGCTGGGAATCCGTGGCCTCGGACGCCATTACAAGCGCGGC TCTGGGTTTATTGTTGCTGGTGTTTCTGGAGGTGCTGTGGTGCCGCCTATTCTGGGTCATGTTGCTGATATGCAT GATAATACGGGATTCGCGTTTATTGTTCCGACTATGTTTATGGTCGTCGCTTGGACTTACGCTATTGCTGTGAAC TTTGTTCCGTCGTATACTGATACCGTGGATAGGATTGGCGGGAGTGACGTTGGTCTTGAGAGTCAGAATATCAAA GACGAGGAGGCTGTTATGGACTCTCATGATATCGATGACGAGAAGCACCAAGCCGTTCATTTAGAGCGGTGA |
| Transcript | >Pro_DTO377G3_2|g2862.t1 ATGGGCGTCAAGGAATTCCTCAAAAGCCGTTCGGGCTTGCGTGTTGATAATCGTGCGACTACTTCTGCTGCTACT CTGACTCTACGACAGAGTCTGTGGCCCTTGACCCTAGTCACGACCTTATTCTTCTTATGGGGCTTTGCGTATGGT TTGCTGGACACCCTCAACTCACATTTCCAGAAAACCCTACATATCGACCGTGGCCGCTCAGCTGGTCTTCAAGCA GCCTACTTTGGCGCATACCCCTTAGCCTCCCTCGGCTACGCAAACTGGATCCTCCGCAACTACGGCTACAAGACC GTCTTCATCTTCGGTCTGTGCCTATACGGTATTGGAGCCCTGTGCATGTGGCCCGCAGGTTTAAACCAATCCTTC GGCGGCTTCTGTGGTGCCACATTAGTCATTGGCTCGGGACTGGGGTCTCTTGAGACAGCGGCTAATCCCTACCTA ACCGTCTGCGGTCCGCCCCGCTATTCTGAGATCAGAATCAACTTTGCCCAGGCCTTCAATGCAATCGGCACAGTC GTCGGCCCCGTTCTGGGCTCTTATGTCTTCTTCACCGAGACAGAGGACGATGTAGCAGCCCTGCAGCGCGTGCAG TGGGTCTACCTCGCCATCGGGGTCTTCGTTTTCTTGCTCGCCGGCGTATTCTTCCTCTCCAATATTCCCGAAGTC ACAGACGAGGACATGGCCTTCCAGGTGACGCAGACGCATGTGGACGAGCAGGATAAGCCTTTCTGGAAACAGTAC AAGCTTTTCCATGCGACACTGGCGCAATTCACGTATACAGGCGCGCAGGTCGCTATCGCAGGCTATTTCATCAAC TACGTCAAAGATACCTGGACGGGTACATCTAGCGCCACAGCAGCGAAGTACCTCGCTGGGGCACAGGGCGCATTC GCAGTCGGCAGATTTTTCGGCTCGGGCATTATGAAATTCGTGCGGGCGCGCTGGGTCTTCCTGCTGTATTTAACG TGCACGGTAGCGTTCCTCGCTGCGTCGGTCACGCAGACCAAGCAGGTTGGTCTCGCTATGCTGTTCATGACGCTC TTCTTTGAGTCTGTTTGCTTCCCGACGATCATGGCGCTGGGAATCCGTGGCCTCGGACGCCATTACAAGCGCGGC TCTGGGTTTATTGTTGCTGGTGTTTCTGGAGGTGCTGTGGTGCCGCCTATTCTGGGTCATGTTGCTGATATGCAT GATAATACGGGATTCGCGTTTATTGTTCCGACTATGTTTATGGTCGTCGCTTGGACTTACGCTATTGCTGTGAAC TTTGTTCCGTCGTATACTGATACCGTGGATAGGATTGGCGGGAGTGACGTTGGTCTTGAGAGTCAGAATATCAAA GACGAGGAGGCTGTTATGGACTCTCATGATATCGATGACGAGAAGCACCAAGCCGTTCATTTAGAGCGGTGA |
| Gene | >Pro_DTO377G3_2|g2862.t1 ATGGGCGTCAAGGAATTCCTCAAAAGCCGTTCGGGCTTGCGTGTTGATAATCGTGCGACTACTTCTGCTGCTACT CTGACTCTACGACAGAGTCTGTGGCCCTTGACCCTAGTCACGACCTTATTCTTCTTATGGGTATGCTACGGTATC TCGTTTATAGCCAGTCCTCCCACTAAGACTTCAATTAGGGCTTTGCGTATGGTTTGCTGGACACCCTCAACTCAC ATTTCCAGAAAACCCTACATATCGACCGTGGCCGCTCAGCTGGTCTTCAAGCAGCCTACTTTGGGTATGGAATCT CTCGATAACATATGTATTATAAAAAAAGATACCACTCTAACAAAACCCAGCGCATACCCCTTAGCCTCCCTCGGC TACGCAAACTGGATCCTCCGCAACTACGGCTACAAGACCGTCTTCATCTTCGGTCTGTGCCTATACGGTATTGGA GCCCTGTGCATGTGGCCCGCAGGTTTAAACCAATCCTTCGGCGGCTTCTGTGGTGCCACATTAGTCATTGGCTCG GGACTGGGGTCTCTTGAGACAGCGGCTAATCCCTACCTAACCGGTAAGACATTCATATGCTCCACAGATAATTAA GCATAGACATTAATAGCTGCCCATTTGAATCTGCCTAGTCTGCGGTCCGCCCCGCTATTCTGAGATCAGAATCAA CTTTGCCCAGGCCTTCAATGCAATCGGCACAGTCGTCGGCCCCGTTCTGGGCTCTTATGTCTTCTTCACCGAGAC AGAGGACGATGTAGCAGCCCTGCAGCGCGTGCAGTGGGTCTACCTCGCCATCGGGGTCTTCGTTTTCTTGCTCGC CGGCGTATTCTTCCTCTCCAATATTCCCGAAGTCACAGACGAGGACATGGCCTTCCAGGTGACGCAGACGCATGT GGACGAGCAGGATAAGCCTTTCTGGAAACAGTACAAGCTTTTCCATGCGACACTGGCGCAATTCACGTATACAGG CGCGCAGGGTGCGTTTCCTACCACCCTTTATCTTATACTTCTCTCTTAATATTCCATCAAGCTAACTCTTTCCTC AGTCGCTATCGCAGGCTATTTCATCAACTACGTCAAAGATACCTGGACGGGTACATCTAGCGCCACAGCAGCGAA GTACCTCGCTGGGGCACAGGGCGCATTCGCAGTCGGCAGATTTTTCGGCTCGGGCATTATGAAATTCGTGCGGGC GCGCTGGGTCTTCCTGCTGTATTTAACGTGCACGGTAGCGTTCCTCGCTGCGTCGGTCACGCAGACCAAGCAGGT TGGTCTCGCTATGCTGTTCATGACGCTCTTCTTTGAGTCTGTTTGCTTCCCGACGATCATGGCGCTGGGAATCCG TGGCCTCGGACGCCATTACAAGCGCGGCTCTGGGTTTATTGTTGCTGGTGTTTCTGGAGGTGCTGTGGTGCCGCC TATTCTGGGTCATGTTGCTGATATGCATGATAATACGGGATTCGCGTTTATTGTTCCGACTATGGTATGTTCTGC TCTTAGATGGGGGTTTCTTGTTTTCGTTTCCGTATCTACCCTGTTAGATCGGTGGCTAATGCTGGTTGCAGTTTA TGGTCGTCGCTTGGACTTACGCTATTGCTGTGAACTTTGTTCCGTCGTATACTGATACCGTGGATAGGATTGGCG GGAGTGACGTTGGTCTTGAGAGTCAGAATATCAAAGACGAGGAGGCTGTTATGGACTCTCATGATATCGATGACG AGAAGCACCAAGCCGTTCATTTAGAGCGGTGA |