© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2857.t1 |
| Gene name | |
| Location | scaffold_04:53394..54033 |
| Strand | + |
| Gene length (bp) | 639 |
| Transcript length (bp) | 639 |
| Coding sequence length (bp) | 639 |
| Protein length (aa) | 213 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00808 | CBFD_NFYB_HMF | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 4.3E-28 | 47 | 111 |
| PF00125 | Histone | Core histone H2A/H2B/H3/H4 | 3.9E-06 | 39 | 111 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Histone-like TF |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 140.34 | 82.79 | 197.89 |
| 5d_25C | Five days - 25 degrees Celsius | 126.83 | 74.41 | 179.25 |
| 7d_25C | Seven days - 25 degrees Celsius | 119.88 | 69.72 | 170.05 |
| 10d_25C | Ten days - 25 degrees Celsius | 170.14 | 102.20 | 238.08 |
| 7d_15C | Seven days - 15 degrees Celsius | 157.54 | 94.47 | 220.61 |
| 7d_30C | Seven days - 30 degrees Celsius | 127.08 | 74.69 | 179.48 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.739815 | no |
| 3d_25C | 7d_25C | 0.577164 | no |
| 3d_25C | 7d_15C | 0.701591 | no |
| 3d_25C | 7d_30C | 0.750776 | no |
| 3d_25C | 10d_25C | 0.466411 | no |
| 5d_25C | 7d_25C | 0.863447 | no |
| 5d_25C | 7d_15C | 0.394274 | no |
| 5d_25C | 7d_30C | 0.995523 | no |
| 5d_25C | 10d_25C | 0.208372 | no |
| 7d_25C | 7d_15C | 0.272632 | no |
| 7d_25C | 7d_30C | 0.863352 | no |
| 7d_25C | 10d_25C | 0.131887 | no |
| 7d_15C | 7d_30C | 0.397763 | no |
| 7d_15C | 10d_25C | 0.807897 | no |
| 7d_30C | 10d_25C | 0.212402 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2857.t1 MSSVSPSKEHDLDPEAQSGEEQDHMDKDHHDAQGHQGEFEVKEQDRWLPIANVARIMKLALPDNAKIAKEAKECM QECVSEYISFITSEASEKCQQEKRKTVNGEDILFAMTSLGFENYAEALKIYLSKYRETQSARGDNQRPPSAGYGA GGPVGGPAGGGPGLARPTGFPNPEGTNPMSNLSLDPSEQDASAYGYPPIVGQPHNGAGGESY* |
| Coding | >Pro_DTO377G3_2|g2857.t1 ATGTCGTCGGTCTCCCCTTCAAAGGAACACGATCTTGACCCAGAGGCGCAATCGGGGGAAGAACAAGACCACATG GACAAAGATCACCACGACGCGCAGGGACACCAAGGCGAGTTTGAGGTGAAGGAGCAAGATCGGTGGCTTCCGATT GCCAATGTGGCTCGTATCATGAAGCTTGCGCTTCCTGACAACGCGAAAATCGCAAAAGAAGCCAAGGAATGCATG CAGGAATGCGTGAGCGAGTACATCTCATTTATCACAAGTGAAGCCTCGGAGAAATGCCAGCAGGAGAAGCGCAAA ACAGTCAACGGCGAAGACATCCTATTCGCCATGACCTCGCTTGGCTTCGAGAATTACGCTGAAGCACTCAAGATC TACCTATCCAAGTACCGTGAAACCCAGTCTGCCCGCGGCGACAATCAGAGACCCCCAAGCGCTGGCTATGGAGCT GGAGGACCTGTTGGTGGCCCCGCCGGAGGTGGGCCTGGACTAGCTCGTCCGACGGGCTTCCCCAATCCTGAAGGC ACAAATCCTATGTCGAACCTCAGCCTTGACCCGTCCGAGCAAGACGCCTCTGCCTACGGCTATCCGCCCATTGTC GGCCAGCCTCACAACGGCGCAGGCGGCGAGTCATACTAG |
| Transcript | >Pro_DTO377G3_2|g2857.t1 ATGTCGTCGGTCTCCCCTTCAAAGGAACACGATCTTGACCCAGAGGCGCAATCGGGGGAAGAACAAGACCACATG GACAAAGATCACCACGACGCGCAGGGACACCAAGGCGAGTTTGAGGTGAAGGAGCAAGATCGGTGGCTTCCGATT GCCAATGTGGCTCGTATCATGAAGCTTGCGCTTCCTGACAACGCGAAAATCGCAAAAGAAGCCAAGGAATGCATG CAGGAATGCGTGAGCGAGTACATCTCATTTATCACAAGTGAAGCCTCGGAGAAATGCCAGCAGGAGAAGCGCAAA ACAGTCAACGGCGAAGACATCCTATTCGCCATGACCTCGCTTGGCTTCGAGAATTACGCTGAAGCACTCAAGATC TACCTATCCAAGTACCGTGAAACCCAGTCTGCCCGCGGCGACAATCAGAGACCCCCAAGCGCTGGCTATGGAGCT GGAGGACCTGTTGGTGGCCCCGCCGGAGGTGGGCCTGGACTAGCTCGTCCGACGGGCTTCCCCAATCCTGAAGGC ACAAATCCTATGTCGAACCTCAGCCTTGACCCGTCCGAGCAAGACGCCTCTGCCTACGGCTATCCGCCCATTGTC GGCCAGCCTCACAACGGCGCAGGCGGCGAGTCATACTAG |
| Gene | >Pro_DTO377G3_2|g2857.t1 ATGTCGTCGGTCTCCCCTTCAAAGGAACACGATCTTGACCCAGAGGCGCAATCGGGGGAAGAACAAGACCACATG GACAAAGATCACCACGACGCGCAGGGACACCAAGGCGAGTTTGAGGTGAAGGAGCAAGATCGGTGGCTTCCGATT GCCAATGTGGCTCGTATCATGAAGCTTGCGCTTCCTGACAACGCGAAAATCGCAAAAGAAGCCAAGGAATGCATG CAGGAATGCGTGAGCGAGTACATCTCATTTATCACAAGTGAAGCCTCGGAGAAATGCCAGCAGGAGAAGCGCAAA ACAGTCAACGGCGAAGACATCCTATTCGCCATGACCTCGCTTGGCTTCGAGAATTACGCTGAAGCACTCAAGATC TACCTATCCAAGTACCGTGAAACCCAGTCTGCCCGCGGCGACAATCAGAGACCCCCAAGCGCTGGCTATGGAGCT GGAGGACCTGTTGGTGGCCCCGCCGGAGGTGGGCCTGGACTAGCTCGTCCGACGGGCTTCCCCAATCCTGAAGGC ACAAATCCTATGTCGAACCTCAGCCTTGACCCGTCCGAGCAAGACGCCTCTGCCTACGGCTATCCGCCCATTGTC GGCCAGCCTCACAACGGCGCAGGCGGCGAGTCATACTAG |