Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g283.t1
Gene name
Location	scaffold_01:720866..722826
Strand	-
Gene length (bp)	1960
Transcript length (bp)	1836
Coding sequence length (bp)	1836
Protein length (aa)	612

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	4.7E-33	23	190
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	2.1E-08	199	293
PF01210	NAD_Gly3P_dh_N	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus	2.2E-05	23	105

GO

GO Term	Description	Terminal node
GO:0046168	glycerol-3-phosphate catabolic process	Yes
GO:0070403	NAD+ binding	Yes
GO:0051287	NAD binding	Yes
GO:0006631	fatty acid metabolic process	Yes
GO:0016491	oxidoreductase activity	Yes
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Yes
GO:0052646	alditol phosphate metabolic process	No
GO:0006629	lipid metabolic process	No
GO:1901136	carbohydrate derivative catabolic process	No
GO:0036094	small molecule binding	No
GO:0009056	catabolic process	No
GO:0005488	binding	No
GO:0006796	phosphate-containing compound metabolic process	No
GO:0006793	phosphorus metabolic process	No
GO:0043167	ion binding	No
GO:0019752	carboxylic acid metabolic process	No
GO:0003824	catalytic activity	No
GO:0008152	metabolic process	No
GO:0000166	nucleotide binding	No
GO:0006082	organic acid metabolic process	No
GO:0071704	organic substance metabolic process	No
GO:0008150	biological_process	No
GO:0043436	oxoacid metabolic process	No
GO:1901265	nucleoside phosphate binding	No
GO:0044238	primary metabolic process	No
GO:0009987	cellular process	No
GO:0044237	cellular metabolic process	No
GO:1901135	carbohydrate derivative metabolic process	No
GO:0043168	anion binding	No
GO:1901363	heterocyclic compound binding	No
GO:0046434	organophosphate catabolic process	No
GO:0003674	molecular_function	No
GO:0006072	glycerol-3-phosphate metabolic process	No
GO:0019637	organophosphate metabolic process	No
GO:1901575	organic substance catabolic process	No
GO:0097159	organic cyclic compound binding	No
GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	No
GO:0032787	monocarboxylic acid metabolic process	No
GO:0044255	cellular lipid metabolic process	No
GO:0044281	small molecule metabolic process	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 41	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	21.06	11.51	30.61
5d_25C	Five days - 25 degrees Celsius	35.27	20.69	49.85
7d_25C	Seven days - 25 degrees Celsius	32.43	18.76	46.09
10d_25C	Ten days - 25 degrees Celsius	47.88	28.98	66.78
7d_15C	Seven days - 15 degrees Celsius	54.82	32.03	77.62
7d_30C	Seven days - 30 degrees Celsius	34.27	19.74	48.79

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.020140	yes
3d_25C	7d_25C	0.067447	no
3d_25C	7d_15C	0.000700	yes
3d_25C	7d_30C	0.031528	yes
3d_25C	10d_25C	0.000700	yes
5d_25C	7d_25C	0.796329	no
5d_25C	7d_15C	0.046955	yes
5d_25C	7d_30C	0.936115	no
5d_25C	10d_25C	0.177661	no
7d_25C	7d_15C	0.019624	yes
7d_25C	7d_30C	0.875695	no
7d_25C	10d_25C	0.085512	no
7d_15C	7d_30C	0.035014	yes
7d_15C	10d_25C	0.631891	no
7d_30C	10d_25C	0.139508	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g283.t1 MNTLRRSMASHWVPPSNYRNRPVTILGAGVLGRRIGCIWASAGYDVRIRDPSSQQRADGIAYIQENVQSYAAKTK QIPGSFEAFEDMKKAVENAWLVIEAVPEKLELKISTFAELEALAPEDCILASNSSSYKSSEIISQISDATKKRVL NMHYYMPPSCMIVELMTDGHTAPEIFPFMVERSKEAATSPYVARKESTGFIFNRLWAAVKREVMTILAEGVSVPE EIDSMWNELFIKGKSLPCRTMDNVGLDTVAFIESHYVQERGLSPEKTVDFLKANYLDQGKLGTKCSKGGLYPASE STSTPKTPDLLVLDIGLSAIKPGVTSGEIVRFAADGTLKNVVLKDQSLPDGLIIDPISGRMFWTCMGAPGKFDGG VYSANVDGTDIKTLIAPGTINTPKQIVLHSEAKTVYFCDREGCRVYRCAYDGSNLEVLIDNTGGEANPQHRISDW CVGIAVVPNYGKFYWTQKGPSKAGKGRIFCANITTPEGESPDARSDVQVVLADLPEPIDLEVHEATHTLYWTDRG ELPIGNSLNKAQLSEQGLLLPASSALGYDVITRNLNEAIGLILDPANSQIYLTDLGGSIYRTDMDGNNKEKIYSN DDRAFTGIALV*
Coding	>Pro_DTO377G3_2\|g283.t1 ATGAACACTTTGCGTCGCAGCATGGCATCACACTGGGTACCTCCGAGCAACTACCGCAACCGCCCAGTCACCATT CTGGGTGCCGGCGTACTCGGCCGCCGAATTGGTTGTATCTGGGCTTCAGCCGGCTACGATGTTCGAATTCGAGAC CCTAGCTCGCAGCAGCGAGCAGACGGAATTGCATACATTCAGGAAAATGTCCAATCCTACGCCGCCAAAACAAAG CAAATCCCCGGATCCTTTGAAGCCTTCGAAGACATGAAGAAAGCCGTTGAAAACGCCTGGCTTGTGATTGAAGCT GTTCCCGAGAAGCTCGAACTTAAGATCTCCACTTTCGCTGAATTGGAAGCCCTCGCCCCGGAGGACTGCATCCTG GCTTCCAACTCATCATCATACAAATCTTCTGAGATAATCAGTCAGATCTCGGATGCCACCAAGAAGCGTGTTCTG AACATGCATTATTATATGCCGCCGTCGTGTATGATCGTGGAGCTCATGACCGATGGACACACTGCCCCAGAGATC TTCCCTTTCATGGTCGAGCGCTCCAAGGAAGCCGCCACAAGTCCATATGTTGCGCGAAAGGAGTCCACTGGGTTC ATCTTCAATCGGCTGTGGGCTGCTGTGAAGCGGGAGGTCATGACTATCTTGGCTGAGGGTGTTTCGGTTCCTGAG GAAATTGATTCGATGTGGAATGAACTGTTCATCAAGGGAAAGAGTCTTCCCTGCCGGACAATGGACAATGTTGGC CTAGACACCGTCGCCTTCATTGAGAGTCATTATGTGCAGGAACGTGGGCTCTCCCCCGAGAAGACGGTCGACTTT TTGAAGGCCAATTACCTGGACCAGGGCAAACTGGGAACAAAGTGCTCGAAGGGTGGCCTCTATCCTGCTAGCGAG TCGACTTCTACTCCCAAGACTCCCGACCTTTTAGTGTTGGACATTGGACTGTCAGCCATCAAACCCGGCGTGACA TCAGGAGAGATCGTTCGCTTTGCCGCAGACGGCACGCTAAAGAACGTGGTTCTCAAGGACCAATCCTTGCCTGAT GGGCTCATCATAGACCCGATCTCTGGCCGCATGTTCTGGACTTGCATGGGCGCTCCAGGGAAGTTCGACGGAGGC GTTTACTCCGCCAACGTGGATGGAACCGACATCAAAACACTCATTGCCCCAGGAACTATCAATACACCGAAACAA ATAGTCCTCCATTCCGAGGCGAAAACTGTCTATTTCTGTGACCGTGAAGGCTGCCGCGTCTACCGTTGTGCCTAC GACGGCTCCAATCTCGAGGTTTTGATTGATAACACCGGCGGTGAAGCGAATCCACAGCACCGCATCTCCGACTGG TGCGTCGGAATTGCTGTGGTGCCAAATTATGGTAAATTCTATTGGACCCAGAAAGGACCCTCGAAGGCTGGCAAA GGCCGGATCTTCTGCGCCAATATCACAACCCCTGAGGGCGAGTCACCAGATGCTCGAAGTGATGTCCAGGTTGTT CTGGCTGATCTCCCCGAGCCGATTGATCTCGAGGTGCACGAAGCCACTCACACACTTTACTGGACCGATCGTGGT GAACTCCCGATCGGCAACTCACTGAACAAAGCTCAGTTGAGTGAACAAGGTCTCCTTCTGCCAGCTAGCTCCGCT CTGGGATATGATGTCATCACCAGAAATCTGAACGAGGCAATCGGTTTGATCTTAGATCCCGCCAATTCTCAGATC TATCTTACTGACCTGGGCGGATCTATCTACCGGACCGATATGGATGGCAACAACAAGGAGAAGATTTACTCCAAT GATGACCGGGCCTTTACTGGAATTGCCCTTGTGTAA
Transcript	>Pro_DTO377G3_2\|g283.t1 ATGAACACTTTGCGTCGCAGCATGGCATCACACTGGGTACCTCCGAGCAACTACCGCAACCGCCCAGTCACCATT CTGGGTGCCGGCGTACTCGGCCGCCGAATTGGTTGTATCTGGGCTTCAGCCGGCTACGATGTTCGAATTCGAGAC CCTAGCTCGCAGCAGCGAGCAGACGGAATTGCATACATTCAGGAAAATGTCCAATCCTACGCCGCCAAAACAAAG CAAATCCCCGGATCCTTTGAAGCCTTCGAAGACATGAAGAAAGCCGTTGAAAACGCCTGGCTTGTGATTGAAGCT GTTCCCGAGAAGCTCGAACTTAAGATCTCCACTTTCGCTGAATTGGAAGCCCTCGCCCCGGAGGACTGCATCCTG GCTTCCAACTCATCATCATACAAATCTTCTGAGATAATCAGTCAGATCTCGGATGCCACCAAGAAGCGTGTTCTG AACATGCATTATTATATGCCGCCGTCGTGTATGATCGTGGAGCTCATGACCGATGGACACACTGCCCCAGAGATC TTCCCTTTCATGGTCGAGCGCTCCAAGGAAGCCGCCACAAGTCCATATGTTGCGCGAAAGGAGTCCACTGGGTTC ATCTTCAATCGGCTGTGGGCTGCTGTGAAGCGGGAGGTCATGACTATCTTGGCTGAGGGTGTTTCGGTTCCTGAG GAAATTGATTCGATGTGGAATGAACTGTTCATCAAGGGAAAGAGTCTTCCCTGCCGGACAATGGACAATGTTGGC CTAGACACCGTCGCCTTCATTGAGAGTCATTATGTGCAGGAACGTGGGCTCTCCCCCGAGAAGACGGTCGACTTT TTGAAGGCCAATTACCTGGACCAGGGCAAACTGGGAACAAAGTGCTCGAAGGGTGGCCTCTATCCTGCTAGCGAG TCGACTTCTACTCCCAAGACTCCCGACCTTTTAGTGTTGGACATTGGACTGTCAGCCATCAAACCCGGCGTGACA TCAGGAGAGATCGTTCGCTTTGCCGCAGACGGCACGCTAAAGAACGTGGTTCTCAAGGACCAATCCTTGCCTGAT GGGCTCATCATAGACCCGATCTCTGGCCGCATGTTCTGGACTTGCATGGGCGCTCCAGGGAAGTTCGACGGAGGC GTTTACTCCGCCAACGTGGATGGAACCGACATCAAAACACTCATTGCCCCAGGAACTATCAATACACCGAAACAA ATAGTCCTCCATTCCGAGGCGAAAACTGTCTATTTCTGTGACCGTGAAGGCTGCCGCGTCTACCGTTGTGCCTAC GACGGCTCCAATCTCGAGGTTTTGATTGATAACACCGGCGGTGAAGCGAATCCACAGCACCGCATCTCCGACTGG TGCGTCGGAATTGCTGTGGTGCCAAATTATGGTAAATTCTATTGGACCCAGAAAGGACCCTCGAAGGCTGGCAAA GGCCGGATCTTCTGCGCCAATATCACAACCCCTGAGGGCGAGTCACCAGATGCTCGAAGTGATGTCCAGGTTGTT CTGGCTGATCTCCCCGAGCCGATTGATCTCGAGGTGCACGAAGCCACTCACACACTTTACTGGACCGATCGTGGT GAACTCCCGATCGGCAACTCACTGAACAAAGCTCAGTTGAGTGAACAAGGTCTCCTTCTGCCAGCTAGCTCCGCT CTGGGATATGATGTCATCACCAGAAATCTGAACGAGGCAATCGGTTTGATCTTAGATCCCGCCAATTCTCAGATC TATCTTACTGACCTGGGCGGATCTATCTACCGGACCGATATGGATGGCAACAACAAGGAGAAGATTTACTCCAAT GATGACCGGGCCTTTACTGGAATTGCCCTTGTGTAA
Gene	>Pro_DTO377G3_2\|g283.t1 ATGAACACTTTGCGTCGCAGCATGGCATCACACTGGGTACCTCCGAGCAACTACCGCAACCGCCCAGTCACCATT CTGGGTGCCGGCGTACTCGGCCGCCGAATTGGTCTGTATCCCATCCCACGTGTTATTCAATGGATAGAAGTGTTG ACAAACTTCGGCTATTAGGTTGTATCTGGGCTTCAGCCGGCTACGATGTTCGAATTCGAGACCCTAGCTCGCAGC AGCGAGCAGACGGAATTGCATACATTCAGGAAAATGTCCAATCCTACGCCGCCAAAACAAAGCAAATCCCCGGAT CCTTTGAAGCCTTCGAAGACATGAAGAAAGCCGTTGAAAACGCCTGGCTTGTGATTGAAGCTGTTCCCGAGAAGC TCGAACTTAAGATCTCCACTTTCGCTGAATTGGAAGCCCTCGCCCCGGAGGACTGCATCCTGGCTTCCAACTCAT CATCATACAAATCTTCTGAGATAATCAGTCAGATCTCGGATGCCACCAAGAAGCGTGTTCTGAACATGCATTATT ATATGCCGCCGTCGTGTATGATCGTGGAGCTCATGACCGATGGACACACTGCCCCAGAGATCTTCCCTTTCATGG TCGAGCGCTCCAAGGAAGCCGCCACAAGTCCATATGTTGCGCGAAAGGAGTCCACTGGGTTCATCTTCAATCGGC TGTGGGCTGCTGTGAAGCGGGAGGTCATGACTATCTTGGCTGAGGGTGTTTCGGTTCCTGAGGAAATTGATTCGA TGTGGAATGAACTGTTCATCAAGGGAAAGAGTCTTCCCTGCCGGACAATGGACAGTAAGTCCTTCACTCGTCTCC CTAGTTTTGTGGGAAGTTGTTCGCTAACATAAATTGCCTAGATGTTGGCCTAGACACCGTCGCCTTCATTGAGAG TCATTATGTGCAGGAACGTGGGCTCTCCCCCGAGAAGACGGTCGACTTTTTGAAGGCCAATTACCTGGACCAGGG CAAACTGGGAACAAAGTGCTCGAAGGGTGGCCTCTATCCTGCTAGCGAGTCGACTTCTACTCCCAAGACTCCCGA CCTTTTAGTGTTGGACATTGGACTGTCAGCCATCAAACCCGGCGTGACATCAGGAGAGATCGTTCGCTTTGCCGC AGACGGCACGCTAAAGAACGTGGTTCTCAAGGACCAATCCTTGCCTGATGGGCTCATCATAGACCCGATCTCTGG CCGCATGTTCTGGACTTGCATGGGCGCTCCAGGGAAGTTCGACGGAGGCGTTTACTCCGCCAACGTGGATGGAAC CGACATCAAAACACTCATTGCCCCAGGAACTATCAATACACCGAAACAAATAGTCCTCCATTCCGAGGCGAAAAC TGTCTATTTCTGTGACCGTGAAGGCTGCCGCGTCTACCGTTGTGCCTACGACGGCTCCAATCTCGAGGTTTTGAT TGATAACACCGGCGGTGAAGCGAATCCACAGCACCGCATCTCCGACTGGTGCGTCGGAATTGCTGTGGTGCCAAA TTATGGTAAATTCTATTGGACCCAGAAAGGACCCTCGAAGGCTGGCAAAGGCCGGATCTTCTGCGCCAATATCAC AACCCCTGAGGGCGAGTCACCAGATGCTCGAAGTGATGTCCAGGTTGTTCTGGCTGATCTCCCCGAGCCGATTGA TCTCGAGGTGCACGAAGCCACTCACACACTTTACTGGACCGATCGTGGTGAACTCCCGATCGGCAACTCACTGAA CAAAGCTCAGTTGAGTGAACAAGGTCTCCTTCTGCCAGCTAGCTCCGCTCTGGGATATGATGTCATCACCAGAAA TCTGAACGAGGCAATCGGTTTGATCTTAGATCCCGCCAATTCTCAGATCTATCTTACTGACCTGGGCGGATCTAT CTACCGGACCGATATGGATGGCAACAACAAGGAGAAGATTTACTCCAATGATGACCGGGCCTTTACTGGAATTGC CCTTGTGTAA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences