© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2818.t1 |
| Gene name | |
| Location | scaffold_03:1035206..1036055 |
| Strand | + |
| Gene length (bp) | 849 |
| Transcript length (bp) | 738 |
| Coding sequence length (bp) | 738 |
| Protein length (aa) | 246 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 41 | 63 | 22 |
| 2 | 102 | 124 | 22 |
| 3 | 158 | 180 | 22 |
| 4 | 200 | 222 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 171.57 | 104.29 | 238.86 |
| 5d_25C | Five days - 25 degrees Celsius | 241.37 | 147.07 | 335.68 |
| 7d_25C | Seven days - 25 degrees Celsius | 272.36 | 165.62 | 379.10 |
| 10d_25C | Ten days - 25 degrees Celsius | 379.79 | 230.55 | 529.02 |
| 7d_15C | Seven days - 15 degrees Celsius | 283.13 | 170.46 | 395.79 |
| 7d_30C | Seven days - 30 degrees Celsius | 180.97 | 109.66 | 252.28 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.117342 | no |
| 3d_25C | 7d_25C | 0.020140 | yes |
| 3d_25C | 7d_15C | 0.017204 | yes |
| 3d_25C | 7d_30C | 0.867718 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.671102 | no |
| 5d_25C | 7d_15C | 0.547864 | no |
| 5d_25C | 7d_30C | 0.203510 | no |
| 5d_25C | 10d_25C | 0.024417 | yes |
| 7d_25C | 7d_15C | 0.906722 | no |
| 7d_25C | 7d_30C | 0.046354 | yes |
| 7d_25C | 10d_25C | 0.125142 | no |
| 7d_15C | 7d_30C | 0.029770 | yes |
| 7d_15C | 10d_25C | 0.194540 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2818.t1 MVSTRHHPREFPSPEVGKELAKLPPATTSANSRKWTHTPAAALTIWLIVSVPLVIWDTGYVLLRPHSMPGGSLHS PIWTPYALYGKVDYIYGWPAFNAHNGFTAAQTMLNVLETIGYIYYLWIVYHYGSTVGRGGRSQNISKEFTWLLKG DKVVAGRIGATALLVAYTASVMTLSKTILYWLNEIFSGFENIGHNDPLTLFLYWILPNGLWLVFPSYNIYVLGAE ILNSLELATPRHKVGRPKST* |
| Coding | >Pro_DTO377G3_2|g2818.t1 ATGGTCTCCACGCGACACCATCCCCGCGAATTCCCCTCCCCCGAGGTCGGGAAAGAGCTAGCCAAGTTACCCCCA GCTACCACCAGCGCCAATTCGCGCAAATGGACCCATACGCCCGCTGCTGCGCTGACAATCTGGCTCATTGTTTCG GTTCCCTTGGTAATATGGGACACAGGCTATGTCTTGTTGCGACCACATAGCATGCCCGGTGGAAGTCTACACTCT CCCATCTGGACGCCTTACGCGCTGTACGGAAAAGTGGACTATATCTATGGCTGGCCAGCCTTCAATGCGCATAAT GGCTTCACGGCTGCACAGACTATGCTCAACGTCCTCGAGACTATCGGTTACATCTATTACCTCTGGATTGTCTAC CACTATGGATCGACGGTTGGGAGAGGTGGCAGATCGCAGAATATCTCCAAGGAATTCACCTGGTTGCTGAAGGGG GACAAGGTCGTCGCTGGGCGCATTGGTGCGACCGCACTTCTGGTCGCCTACACCGCGTCTGTCATGACCCTGAGC AAGACCATCCTTTACTGGCTCAACGAGATCTTCTCTGGCTTCGAGAACATCGGTCACAACGACCCGCTTACTCTG TTCCTCTACTGGATCCTCCCTAATGGGCTGTGGCTCGTGTTTCCCAGCTACAATATCTATGTTCTCGGGGCCGAG ATTCTGAACTCGCTTGAGCTCGCAACACCACGCCATAAGGTTGGACGCCCGAAATCCACCTAG |
| Transcript | >Pro_DTO377G3_2|g2818.t1 ATGGTCTCCACGCGACACCATCCCCGCGAATTCCCCTCCCCCGAGGTCGGGAAAGAGCTAGCCAAGTTACCCCCA GCTACCACCAGCGCCAATTCGCGCAAATGGACCCATACGCCCGCTGCTGCGCTGACAATCTGGCTCATTGTTTCG GTTCCCTTGGTAATATGGGACACAGGCTATGTCTTGTTGCGACCACATAGCATGCCCGGTGGAAGTCTACACTCT CCCATCTGGACGCCTTACGCGCTGTACGGAAAAGTGGACTATATCTATGGCTGGCCAGCCTTCAATGCGCATAAT GGCTTCACGGCTGCACAGACTATGCTCAACGTCCTCGAGACTATCGGTTACATCTATTACCTCTGGATTGTCTAC CACTATGGATCGACGGTTGGGAGAGGTGGCAGATCGCAGAATATCTCCAAGGAATTCACCTGGTTGCTGAAGGGG GACAAGGTCGTCGCTGGGCGCATTGGTGCGACCGCACTTCTGGTCGCCTACACCGCGTCTGTCATGACCCTGAGC AAGACCATCCTTTACTGGCTCAACGAGATCTTCTCTGGCTTCGAGAACATCGGTCACAACGACCCGCTTACTCTG TTCCTCTACTGGATCCTCCCTAATGGGCTGTGGCTCGTGTTTCCCAGCTACAATATCTATGTTCTCGGGGCCGAG ATTCTGAACTCGCTTGAGCTCGCAACACCACGCCATAAGGTTGGACGCCCGAAATCCACCTAG |
| Gene | >Pro_DTO377G3_2|g2818.t1 ATGGTCTCCACGCGACACCATCCCCGCGAATTCCCCTCCCCCGAGGTCGGGAAAGAGCTAGCCAAGTTACCCCCA GCTACCACCAGCGCCAATTCGCGCAAATGGACCCATACGCCCGCTGCTGCGCTGACAATCTGGCTCATTGTTTCG GTTCCCTTGGTAATATGGGACACAGGCTATGTCTTGTTGCGACCACATAGCATGCCCGGTGGAAGTCTACACTCT CCCATCTGGACGCCTTACGCGCTGTACGGAAAAGTGGACTATATCTATGGCTGGCCAGCCTTCAATGCGCATAAT GGCTTCACGGCTGCACAGACTATGCTCAACGTCCTCGAGACTATCGGTTACATCTATTACCTCTGGATTGTCTAC CACTATGGATCGACGGTTGGGAGAGGTGGCAGATCGCAGAATATCTCCAAGGAATTCACCTGGTTGCTGAAGGGG GACAAGGTCGTCGCTGGGCGCATTGGTGCGACCGCACTTCTGGTCGCCTACACCGCGTCTGTCATGACCCTGAGC AAGACCATCCTTTACTGTAAGCTATATCTATTTCCTGGGCTTTGTGTGTCGGATTATAACACAAAACAAAATAGG GCTCAACGAGATCTTCTCTGGCTTCGAGAACATCGGTCACAACGACCCGCTTACTCTGTTCCTCTACTGGATCCT CCCTAAGTGAGCTCCGTCTAGTGCATGTTTACATGAAATATAACACTAATATCATTCAGTGGGCTGTGGCTCGTG TTTCCCAGCTACAATATCTATGTTCTCGGGGCCGAGATTCTGAACTCGCTTGAGCTCGCAACACCACGCCATAAG GTTGGACGCCCGAAATCCACCTAG |