© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2799.t1 |
| Gene name | |
| Location | scaffold_03:990042..991414 |
| Strand | + |
| Gene length (bp) | 1372 |
| Transcript length (bp) | 1251 |
| Coding sequence length (bp) | 1251 |
| Protein length (aa) | 417 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13344 | Hydrolase_6 | Haloacid dehalogenase-like hydrolase | 2.4E-21 | 68 | 172 |
| PF13242 | Hydrolase_like | HAD-hyrolase-like | 1.1E-11 | 298 | 384 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 60 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 229.15 | 137.97 | 320.32 |
| 5d_25C | Five days - 25 degrees Celsius | 303.57 | 180.35 | 426.79 |
| 7d_25C | Seven days - 25 degrees Celsius | 354.09 | 206.14 | 502.04 |
| 10d_25C | Ten days - 25 degrees Celsius | 624.14 | 347.95 | 900.32 |
| 7d_15C | Seven days - 15 degrees Celsius | 273.78 | 161.67 | 385.89 |
| 7d_30C | Seven days - 30 degrees Celsius | 286.76 | 167.11 | 406.41 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.232457 | no |
| 3d_25C | 7d_25C | 0.044177 | yes |
| 3d_25C | 7d_15C | 0.491949 | no |
| 3d_25C | 7d_30C | 0.375285 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.575957 | no |
| 5d_25C | 7d_15C | 0.725749 | no |
| 5d_25C | 7d_30C | 0.863146 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.287707 | no |
| 7d_25C | 7d_30C | 0.407330 | no |
| 7d_25C | 10d_25C | 0.009124 | yes |
| 7d_15C | 7d_30C | 0.892671 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2799.t1 MATDRSGTQRVTDLHGPNVVFKHSMIFTPDNIFNSNMAKQDQVSSEESPINTPMTNPPKVTSDDFALAFDIDGVL IKGGEPIPEAVDAMKYINGENPYGVKVPYIFLTNGGGKTEKERCLDLSKQLDLEVDPGQFICGHTPMREMAERYN TVLVVGGEGEKCRVVAEGYGFKDVITPGDIIKTRHDTTPFRTLTDEEHQNSRLLDLDKVRIEAIFVFADSRDWAG DQQIILDCLMSKDGWLNKRSEIFTEGPPVFFSHTDVVWSTSHEHSRLGMGALRASLEAVYAAITGKDLNTTAFGK PQLGTYGFATRLLQKWRKDSCGIDKSPSTVYFIGDTPESDIRGTNEFNETTENDWFSILVKTGVYQDGAVPRYPP RKICDNVFDAVKFAIEREHRKTSKGITVSELDYDISEAPPK* |
| Coding | >Pro_DTO377G3_2|g2799.t1 ATGGCCACAGATAGATCAGGAACTCAAAGGGTGACCGATCTCCATGGGCCTAACGTCGTCTTTAAGCATTCGATG ATTTTCACTCCTGACAATATCTTCAACTCAAATATGGCCAAGCAGGATCAAGTATCATCTGAGGAATCTCCAATC AACACCCCTATGACGAACCCTCCTAAGGTTACTAGCGATGATTTCGCCCTAGCCTTCGATATCGATGGCGTTCTG ATCAAGGGCGGCGAGCCTATTCCCGAAGCCGTTGATGCTATGAAGTATATCAACGGCGAAAACCCCTACGGAGTC AAAGTTCCTTATATTTTCTTGACCAACGGCGGCGGGAAGACAGAGAAAGAGCGATGCCTGGACCTCAGCAAACAA CTCGACCTGGAAGTCGACCCTGGCCAGTTTATCTGTGGCCACACGCCCATGCGCGAAATGGCAGAGCGATACAAC ACCGTCCTGGTGGTTGGTGGCGAGGGTGAAAAATGCCGGGTCGTGGCTGAAGGATATGGATTCAAGGATGTCATC ACACCCGGAGATATCATTAAGACGAGACACGATACTACGCCATTCCGAACGCTGACGGATGAGGAGCACCAAAAT TCCCGGCTGCTCGATTTAGACAAGGTCCGCATCGAAGCGATCTTCGTCTTTGCAGATAGTCGCGACTGGGCTGGT GACCAGCAAATCATTTTGGACTGCCTCATGAGCAAAGACGGCTGGTTGAATAAACGGTCGGAGATCTTCACTGAA GGCCCACCTGTCTTCTTCTCGCACACCGATGTGGTTTGGTCAACATCGCATGAACATTCACGTCTTGGGATGGGA GCGCTGCGCGCTTCCCTCGAGGCTGTTTACGCGGCTATCACAGGCAAAGACCTCAACACTACTGCTTTCGGTAAG CCGCAGCTCGGAACCTATGGATTTGCCACCCGGCTTTTGCAAAAGTGGCGAAAGGACTCGTGTGGCATCGACAAG TCTCCGTCTACCGTGTACTTCATTGGCGATACTCCGGAATCCGACATCCGTGGCACAAATGAATTTAACGAGACT ACGGAAAATGACTGGTTCTCCATTCTGGTTAAGACTGGAGTCTACCAGGATGGTGCTGTCCCACGCTATCCACCC AGAAAGATATGCGATAATGTTTTTGATGCCGTCAAGTTTGCTATCGAGCGCGAGCATCGAAAGACTTCCAAAGGA ATAACTGTTTCCGAGCTCGACTATGACATCAGCGAAGCACCTCCCAAATAA |
| Transcript | >Pro_DTO377G3_2|g2799.t1 ATGGCCACAGATAGATCAGGAACTCAAAGGGTGACCGATCTCCATGGGCCTAACGTCGTCTTTAAGCATTCGATG ATTTTCACTCCTGACAATATCTTCAACTCAAATATGGCCAAGCAGGATCAAGTATCATCTGAGGAATCTCCAATC AACACCCCTATGACGAACCCTCCTAAGGTTACTAGCGATGATTTCGCCCTAGCCTTCGATATCGATGGCGTTCTG ATCAAGGGCGGCGAGCCTATTCCCGAAGCCGTTGATGCTATGAAGTATATCAACGGCGAAAACCCCTACGGAGTC AAAGTTCCTTATATTTTCTTGACCAACGGCGGCGGGAAGACAGAGAAAGAGCGATGCCTGGACCTCAGCAAACAA CTCGACCTGGAAGTCGACCCTGGCCAGTTTATCTGTGGCCACACGCCCATGCGCGAAATGGCAGAGCGATACAAC ACCGTCCTGGTGGTTGGTGGCGAGGGTGAAAAATGCCGGGTCGTGGCTGAAGGATATGGATTCAAGGATGTCATC ACACCCGGAGATATCATTAAGACGAGACACGATACTACGCCATTCCGAACGCTGACGGATGAGGAGCACCAAAAT TCCCGGCTGCTCGATTTAGACAAGGTCCGCATCGAAGCGATCTTCGTCTTTGCAGATAGTCGCGACTGGGCTGGT GACCAGCAAATCATTTTGGACTGCCTCATGAGCAAAGACGGCTGGTTGAATAAACGGTCGGAGATCTTCACTGAA GGCCCACCTGTCTTCTTCTCGCACACCGATGTGGTTTGGTCAACATCGCATGAACATTCACGTCTTGGGATGGGA GCGCTGCGCGCTTCCCTCGAGGCTGTTTACGCGGCTATCACAGGCAAAGACCTCAACACTACTGCTTTCGGTAAG CCGCAGCTCGGAACCTATGGATTTGCCACCCGGCTTTTGCAAAAGTGGCGAAAGGACTCGTGTGGCATCGACAAG TCTCCGTCTACCGTGTACTTCATTGGCGATACTCCGGAATCCGACATCCGTGGCACAAATGAATTTAACGAGACT ACGGAAAATGACTGGTTCTCCATTCTGGTTAAGACTGGAGTCTACCAGGATGGTGCTGTCCCACGCTATCCACCC AGAAAGATATGCGATAATGTTTTTGATGCCGTCAAGTTTGCTATCGAGCGCGAGCATCGAAAGACTTCCAAAGGA ATAACTGTTTCCGAGCTCGACTATGACATCAGCGAAGCACCTCCCAAATAA |
| Gene | >Pro_DTO377G3_2|g2799.t1 ATGGCCACAGATAGATCAGGAACTCAAAGGGTGACCGATCTCCATGGGCCTAACGTCGTCTTTAAGCATTCGATG ATTTTCACTCCTGACAATATCTTCAACTCAAATATGGCCAAGCAGGATCAAGTATCATCTGAGGAATCTCCAATC AACACCCCTATGACGAACCCTCCTAAGGTTACTAGCGATGATTTCGCCCTAGCCTTCGATATCGATGGCGTTCTG ATCAAGGGCGGCGAGCCTATTCCCGAAGCCGTTGATGCTATGAAGTATATCAACGGCGAAAACCCCTACGGAGTC AAAGTGTAAGTATTTGCCCTGGTGTTATTTCCATGGTTCCTCACCCAGGACAGGGCGAGGGGAAACAGTTGCGAG CAAAAAAAGAAAAGACGGAAAAGGAATTTGAATCTAACGGCAACATTATAGTCCTTATATTTTCTTGACCAACGG CGGCGGGAAGACAGAGAAAGAGCGATGCCTGGACCTCAGCAAACAACTCGACCTGGAAGTCGACCCTGGCCAGTT TATCTGTGGCCACACGCCCATGCGCGAAATGGCAGAGCGATACAACACCGTCCTGGTGGTTGGTGGCGAGGGTGA AAAATGCCGGGTCGTGGCTGAAGGATATGGATTCAAGGATGTCATCACACCCGGAGATATCATTAAGACGAGACA CGATACTACGCCATTCCGAACGCTGACGGATGAGGAGCACCAAAATTCCCGGCTGCTCGATTTAGACAAGGTCCG CATCGAAGCGATCTTCGTCTTTGCAGATAGTCGCGACTGGGCTGGTGACCAGCAAATCATTTTGGACTGCCTCAT GAGCAAAGACGGCTGGTTGAATAAACGGTCGGAGATCTTCACTGAAGGCCCACCTGTCTTCTTCTCGCACACCGA TGTGGTTTGGTCAACATCGCATGAACATTCACGTCTTGGGATGGGAGCGCTGCGCGCTTCCCTCGAGGCTGTTTA CGCGGCTATCACAGGCAAAGACCTCAACACTACTGCTTTCGGTAAGCCGCAGCTCGGAACCTATGGATTTGCCAC CCGGCTTTTGCAAAAGTGGCGAAAGGACTCGTGTGGCATCGACAAGTCTCCGTCTACCGTGTACTTCATTGGCGA TACTCCGGAATCCGACATCCGTGGCACAAATGAATTTAACGAGACTACGGAAAATGACTGGTTCTCCATTCTGGT TAAGACTGGAGTCTACCAGGATGGTGCTGTCCCACGCTATCCACCCAGAAAGATATGCGATAATGTTTTTGATGC CGTCAAGTTTGCTATCGAGCGCGAGCATCGAAAGACTTCCAAAGGAATAACTGTTTCCGAGCTCGACTATGACAT CAGCGAAGCACCTCCCAAATAA |