© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2795.t1 |
| Gene name | |
| Location | scaffold_03:977910..978857 |
| Strand | - |
| Gene length (bp) | 947 |
| Transcript length (bp) | 480 |
| Coding sequence length (bp) | 480 |
| Protein length (aa) | 160 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00137 | ATP-synt_C | ATP synthase subunit C | 1.5E-13 | 16 | 74 |
| PF00137 | ATP-synt_C | ATP synthase subunit C | 5.0E-22 | 92 | 151 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:1902600 | proton transmembrane transport | Yes |
| GO:0015078 | proton transmembrane transporter activity | Yes |
| GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | Yes |
| GO:0003674 | molecular_function | No |
| GO:0055085 | transmembrane transport | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0032991 | protein-containing complex | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0098796 | membrane protein complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
| 2 | 54 | 76 | 22 |
| 3 | 89 | 111 | 22 |
| 4 | 126 | 148 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 597.49 | 365.03 | 829.96 |
| 5d_25C | Five days - 25 degrees Celsius | 566.70 | 346.28 | 787.12 |
| 7d_25C | Seven days - 25 degrees Celsius | 619.72 | 377.00 | 862.44 |
| 10d_25C | Ten days - 25 degrees Celsius | 825.20 | 502.94 | 1147.46 |
| 7d_15C | Seven days - 15 degrees Celsius | 578.43 | 353.12 | 803.74 |
| 7d_30C | Seven days - 30 degrees Celsius | 717.18 | 436.21 | 998.15 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.870273 | no |
| 3d_25C | 7d_25C | 0.913013 | no |
| 3d_25C | 7d_15C | 0.924275 | no |
| 3d_25C | 7d_30C | 0.464460 | no |
| 3d_25C | 10d_25C | 0.151643 | no |
| 5d_25C | 7d_25C | 0.764958 | no |
| 5d_25C | 7d_15C | 0.953631 | no |
| 5d_25C | 7d_30C | 0.326335 | no |
| 5d_25C | 10d_25C | 0.086230 | no |
| 7d_25C | 7d_15C | 0.825712 | no |
| 7d_25C | 7d_30C | 0.580084 | no |
| 7d_25C | 10d_25C | 0.222363 | no |
| 7d_15C | 7d_30C | 0.372332 | no |
| 7d_15C | 10d_25C | 0.106471 | no |
| 7d_30C | 10d_25C | 0.604073 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2795.t1 MATELCPVYAPFFGALGCTSAIVFTCFGAAYGTAKAGVGVCSMAVLRPDLIVKNIVPIVMAGIIGIYGLVVSVLV ANDLTQQLPLYTGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVALL MNSRSKATC* |
| Coding | >Pro_DTO377G3_2|g2795.t1 ATGGCAACTGAACTTTGCCCCGTCTATGCGCCCTTCTTTGGCGCGCTGGGCTGCACCTCCGCTATCGTCTTCACC TGCTTCGGTGCCGCATATGGAACTGCTAAGGCTGGTGTCGGAGTTTGCTCCATGGCCGTCCTCCGCCCCGACCTG ATCGTCAAGAACATTGTCCCCATTGTCATGGCGGGTATCATTGGTATCTACGGTCTTGTCGTATCGGTCCTGGTC GCCAACGACTTGACCCAGCAGCTTCCTCTCTACACTGGTTTCATCCAGCTCGGTGCTGGTCTGTCTGTCGGTCTG GCTGGTCTTGCTGCGGGTTTCGCTATTGGTATTGTTGGTGACGCGGGTGTTCGTGGAACGGCTCAACAGCCTAGA CTGTATGTCGGAATGATTCTGATTCTCATTTTCGCTGAAGTCTTGGGTCTGTACGGGTTGATTGTTGCTCTTCTC ATGAACTCGCGCTCGAAAGCAACCTGCTAA |
| Transcript | >Pro_DTO377G3_2|g2795.t1 ATGGCAACTGAACTTTGCCCCGTCTATGCGCCCTTCTTTGGCGCGCTGGGCTGCACCTCCGCTATCGTCTTCACC TGCTTCGGTGCCGCATATGGAACTGCTAAGGCTGGTGTCGGAGTTTGCTCCATGGCCGTCCTCCGCCCCGACCTG ATCGTCAAGAACATTGTCCCCATTGTCATGGCGGGTATCATTGGTATCTACGGTCTTGTCGTATCGGTCCTGGTC GCCAACGACTTGACCCAGCAGCTTCCTCTCTACACTGGTTTCATCCAGCTCGGTGCTGGTCTGTCTGTCGGTCTG GCTGGTCTTGCTGCGGGTTTCGCTATTGGTATTGTTGGTGACGCGGGTGTTCGTGGAACGGCTCAACAGCCTAGA CTGTATGTCGGAATGATTCTGATTCTCATTTTCGCTGAAGTCTTGGGTCTGTACGGGTTGATTGTTGCTCTTCTC ATGAACTCGCGCTCGAAAGCAACCTGCTAA |
| Gene | >Pro_DTO377G3_2|g2795.t1 ATGGCAACTGAACTTTGGTAAGTCGTCAGCTAGACCTCCCTCCAGCCCCTGGGTGCTCAACAGCTTCCGATCAAC ACCCTGTTATCAAGCCCGTCATCCCCCATAATTTATGGATCAGCCTTGCTAACATTTAGATTGACAGCCCCGTCT ATGCGGTGAGTCTTGTTAAATGCTAGATCTCGACACCCGAGCACAACCAAGCCAATCGCCCGTGTCTCGGCCCTC CGCGTCATCCATCTGCTCACAATGCATCCGAATGATAACTAATATTTCTTCCTTTAGCCCTTCTTTGGCGCGCTG GGCTGCACCTCCGCTATCGTCTTCACCTGCTTCGGTGCCGCATATGGAACTGCTAAGGCTGGTGTCGGAGTTTGC TCCATGGCCGTCCTCCGCCCCGACCTGATCGTCAAGAGTACGTGGATCTCAACAAGAGCTCTGCCGATCTGGCAA TGAGATACTCCTAGTCTCGCGCAAGGATATATGGCAGCAATTCGCTAACTATTCTCCAGACATTGTCCCCATTGT CATGGCGGGTATCATTGGTATCTACGGTCTTGTCGTATCGGTCCTGGTCGCCAACGACTTGACCCAGCAGCTTCC TCTCTACACTGGTTTCATCCAGCTCGGTGCTGGTCTGTCTGTCGGTCTGGCTGGTCTTGCTGCGGGGTAAGTTTC CTACACAGCGAATCGCCTATTGTTCTAAGTTTGTTGCTAATTGGGATTACAGTTTCGCTATTGGTATTGTTGGTG ACGCGGGTGTTCGTGGAACGGCTCAACAGCCTAGACTGTATGTCGGAATGATTCTGATTCTCATTTTCGCTGAAG TCTTGGGTAAGTCGTAGCTATTCCTCATACCTCTGTATAATTGCATCTAACCATCCCTCACAGGTCTGTACGGGT TGATTGTTGCTCTTCTCATGAACTCGCGCTCGAAAGCAACCTGCTAA |