© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2782.t1 |
| Gene name | |
| Location | scaffold_03:938551..940276 |
| Strand | + |
| Gene length (bp) | 1725 |
| Transcript length (bp) | 1725 |
| Coding sequence length (bp) | 1725 |
| Protein length (aa) | 575 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02776 | TPP_enzyme_N | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 1.5E-34 | 6 | 175 |
| PF00205 | TPP_enzyme_M | Thiamine pyrophosphate enzyme, central domain | 4.1E-19 | 201 | 318 |
| PF02775 | TPP_enzyme_C | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 1.2E-13 | 398 | 482 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000287 | magnesium ion binding | Yes |
| GO:0003824 | catalytic activity | Yes |
| GO:0030976 | thiamine pyrophosphate binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:1901681 | sulfur compound binding | No |
| GO:0050997 | quaternary ammonium group binding | No |
| GO:0019842 | vitamin binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 79.49 | 48.40 | 110.58 |
| 5d_25C | Five days - 25 degrees Celsius | 70.85 | 43.09 | 98.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 59.83 | 35.84 | 83.82 |
| 10d_25C | Ten days - 25 degrees Celsius | 69.88 | 42.41 | 97.36 |
| 7d_15C | Seven days - 15 degrees Celsius | 55.86 | 33.72 | 77.99 |
| 7d_30C | Seven days - 30 degrees Celsius | 126.96 | 76.41 | 177.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.685287 | no |
| 3d_25C | 7d_25C | 0.219896 | no |
| 3d_25C | 7d_15C | 0.105274 | no |
| 3d_25C | 7d_30C | 0.027043 | yes |
| 3d_25C | 10d_25C | 0.639483 | no |
| 5d_25C | 7d_25C | 0.515883 | no |
| 5d_25C | 7d_15C | 0.319079 | no |
| 5d_25C | 7d_30C | 0.003197 | yes |
| 5d_25C | 10d_25C | 0.968876 | no |
| 7d_25C | 7d_15C | 0.826762 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.559908 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.351067 | no |
| 7d_30C | 10d_25C | 0.002761 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2782.t1 MTQDIKLAEYLFTRLRQLGVDSMFGVPGDYNLRLLDFVTPAGLHWVGNCNELNAAYAADGYGRIKGLSALITTYG VGELSAINGIAGAYAENTPVLHIVGTPPRPLQSARTFMHHTFSDGDYRRFANMSKHVTAAQVRLEDAATAPERID YVLRQALVHSRPVYLELPDDMPDVLVSAKNLETKISIPQPPSSTQEPEVLARILEKVYSAKRPLIFVDGESTGLG IVEQIDALIKATNWPTWTTVYGKGLVNEQLPNVYGLYAGAFGDKSAQEYFDEADLILAFGLHNSDSNTYYFTTIP KPAVSIAFSGSTVQIDNDTYRDLSARNILSNILQSLDSTRLVKATGPPKQEITLANIKNTDPLAQDNFYRLVNPL LREGDIILTETGTASHGGRNFKLPPKCRIFGAVTWLSIGFMLPATLGTALAQREHNKVTESKSQTILFIGDGSLQ MTAQEISVMIREKLNIIIFIINNEGYTIERVIHGRKQVYNDVPFWRHAQALNYFGADQEHAANNSFTARTCGELK DVLASEQIQNGSGVRLVEVFMHREDVQGVLLHLLNKQLAQEKGEAEQQS* |
| Coding | >Pro_DTO377G3_2|g2782.t1 ATGACTCAAGATATAAAACTCGCAGAGTACCTGTTTACCCGGTTGCGCCAGCTGGGCGTCGACTCCATGTTCGGC GTCCCTGGTGACTACAACCTTCGTCTATTAGATTTCGTCACTCCCGCCGGTCTCCACTGGGTGGGCAACTGCAAT GAACTCAATGCCGCCTATGCAGCGGACGGATATGGTCGCATCAAAGGCCTGTCTGCACTGATCACTACATATGGC GTTGGCGAGCTGTCCGCTATCAACGGCATTGCAGGCGCCTATGCCGAGAATACACCTGTGTTACACATTGTCGGA ACTCCACCGCGCCCACTTCAGAGCGCGCGCACGTTTATGCACCACACTTTCTCAGATGGCGACTACCGTCGCTTT GCGAACATGTCGAAGCATGTCACTGCAGCTCAAGTGAGGCTGGAAGACGCTGCCACAGCGCCGGAACGGATCGAC TATGTCCTGCGCCAGGCGTTGGTCCACAGCCGTCCGGTCTACCTTGAATTGCCCGATGATATGCCCGACGTGCTG GTGTCGGCTAAAAATTTGGAAACAAAGATCAGCATTCCTCAACCACCAAGCTCTACACAAGAGCCCGAAGTGCTG GCTCGCATCTTGGAGAAAGTGTACAGTGCCAAGCGTCCGCTCATCTTCGTGGACGGAGAAAGCACAGGTCTTGGT ATCGTCGAGCAGATCGATGCTCTGATCAAAGCAACCAACTGGCCCACATGGACAACCGTGTACGGCAAAGGCCTA GTCAACGAGCAGCTGCCAAATGTGTACGGATTGTACGCAGGAGCCTTTGGCGACAAGTCAGCGCAGGAGTACTTC GACGAGGCAGATTTGATTCTGGCATTCGGACTGCACAATAGCGACTCCAACACCTATTACTTTACGACAATCCCC AAGCCCGCAGTGTCAATCGCCTTTTCAGGCAGTACCGTTCAAATCGACAATGATACTTATCGCGACCTGTCCGCC CGCAACATTCTATCAAACATACTCCAAAGCCTCGACTCCACCCGCCTAGTCAAGGCCACCGGACCCCCGAAACAA GAAATCACATTGGCCAACATCAAAAACACAGACCCCCTCGCGCAAGACAACTTCTACCGCCTGGTAAACCCGCTC TTGCGCGAAGGCGACATAATCCTCACCGAGACGGGCACCGCCTCGCATGGCGGCCGGAACTTCAAACTGCCTCCG AAATGCCGCATCTTCGGCGCGGTCACTTGGCTCTCGATTGGATTCATGCTCCCGGCAACACTAGGCACAGCGCTA GCGCAGCGTGAGCACAACAAGGTCACAGAAAGCAAGAGTCAGACTATTTTGTTCATCGGCGATGGAAGTCTGCAG ATGACAGCGCAGGAGATCAGTGTGATGATCCGTGAGAAGTTGAACATTATTATTTTCATCATCAATAACGAAGGC TATACCATTGAGCGGGTGATCCACGGACGCAAGCAGGTGTACAATGATGTGCCTTTCTGGAGACACGCGCAGGCG CTGAACTATTTCGGAGCTGATCAAGAGCATGCGGCGAATAATAGTTTTACGGCGAGGACCTGTGGCGAGTTGAAG GATGTGTTGGCTAGCGAGCAGATTCAGAATGGATCTGGGGTGAGGCTTGTTGAAGTCTTTATGCATAGGGAGGAT GTGCAGGGAGTTTTGCTGCATTTACTGAACAAGCAACTTGCTCAGGAGAAGGGGGAGGCAGAGCAGCAGAGTTAG |
| Transcript | >Pro_DTO377G3_2|g2782.t1 ATGACTCAAGATATAAAACTCGCAGAGTACCTGTTTACCCGGTTGCGCCAGCTGGGCGTCGACTCCATGTTCGGC GTCCCTGGTGACTACAACCTTCGTCTATTAGATTTCGTCACTCCCGCCGGTCTCCACTGGGTGGGCAACTGCAAT GAACTCAATGCCGCCTATGCAGCGGACGGATATGGTCGCATCAAAGGCCTGTCTGCACTGATCACTACATATGGC GTTGGCGAGCTGTCCGCTATCAACGGCATTGCAGGCGCCTATGCCGAGAATACACCTGTGTTACACATTGTCGGA ACTCCACCGCGCCCACTTCAGAGCGCGCGCACGTTTATGCACCACACTTTCTCAGATGGCGACTACCGTCGCTTT GCGAACATGTCGAAGCATGTCACTGCAGCTCAAGTGAGGCTGGAAGACGCTGCCACAGCGCCGGAACGGATCGAC TATGTCCTGCGCCAGGCGTTGGTCCACAGCCGTCCGGTCTACCTTGAATTGCCCGATGATATGCCCGACGTGCTG GTGTCGGCTAAAAATTTGGAAACAAAGATCAGCATTCCTCAACCACCAAGCTCTACACAAGAGCCCGAAGTGCTG GCTCGCATCTTGGAGAAAGTGTACAGTGCCAAGCGTCCGCTCATCTTCGTGGACGGAGAAAGCACAGGTCTTGGT ATCGTCGAGCAGATCGATGCTCTGATCAAAGCAACCAACTGGCCCACATGGACAACCGTGTACGGCAAAGGCCTA GTCAACGAGCAGCTGCCAAATGTGTACGGATTGTACGCAGGAGCCTTTGGCGACAAGTCAGCGCAGGAGTACTTC GACGAGGCAGATTTGATTCTGGCATTCGGACTGCACAATAGCGACTCCAACACCTATTACTTTACGACAATCCCC AAGCCCGCAGTGTCAATCGCCTTTTCAGGCAGTACCGTTCAAATCGACAATGATACTTATCGCGACCTGTCCGCC CGCAACATTCTATCAAACATACTCCAAAGCCTCGACTCCACCCGCCTAGTCAAGGCCACCGGACCCCCGAAACAA GAAATCACATTGGCCAACATCAAAAACACAGACCCCCTCGCGCAAGACAACTTCTACCGCCTGGTAAACCCGCTC TTGCGCGAAGGCGACATAATCCTCACCGAGACGGGCACCGCCTCGCATGGCGGCCGGAACTTCAAACTGCCTCCG AAATGCCGCATCTTCGGCGCGGTCACTTGGCTCTCGATTGGATTCATGCTCCCGGCAACACTAGGCACAGCGCTA GCGCAGCGTGAGCACAACAAGGTCACAGAAAGCAAGAGTCAGACTATTTTGTTCATCGGCGATGGAAGTCTGCAG ATGACAGCGCAGGAGATCAGTGTGATGATCCGTGAGAAGTTGAACATTATTATTTTCATCATCAATAACGAAGGC TATACCATTGAGCGGGTGATCCACGGACGCAAGCAGGTGTACAATGATGTGCCTTTCTGGAGACACGCGCAGGCG CTGAACTATTTCGGAGCTGATCAAGAGCATGCGGCGAATAATAGTTTTACGGCGAGGACCTGTGGCGAGTTGAAG GATGTGTTGGCTAGCGAGCAGATTCAGAATGGATCTGGGGTGAGGCTTGTTGAAGTCTTTATGCATAGGGAGGAT GTGCAGGGAGTTTTGCTGCATTTACTGAACAAGCAACTTGCTCAGGAGAAGGGGGAGGCAGAGCAGCAGAGTTAG |
| Gene | >Pro_DTO377G3_2|g2782.t1 ATGACTCAAGATATAAAACTCGCAGAGTACCTGTTTACCCGGTTGCGCCAGCTGGGCGTCGACTCCATGTTCGGC GTCCCTGGTGACTACAACCTTCGTCTATTAGATTTCGTCACTCCCGCCGGTCTCCACTGGGTGGGCAACTGCAAT GAACTCAATGCCGCCTATGCAGCGGACGGATATGGTCGCATCAAAGGCCTGTCTGCACTGATCACTACATATGGC GTTGGCGAGCTGTCCGCTATCAACGGCATTGCAGGCGCCTATGCCGAGAATACACCTGTGTTACACATTGTCGGA ACTCCACCGCGCCCACTTCAGAGCGCGCGCACGTTTATGCACCACACTTTCTCAGATGGCGACTACCGTCGCTTT GCGAACATGTCGAAGCATGTCACTGCAGCTCAAGTGAGGCTGGAAGACGCTGCCACAGCGCCGGAACGGATCGAC TATGTCCTGCGCCAGGCGTTGGTCCACAGCCGTCCGGTCTACCTTGAATTGCCCGATGATATGCCCGACGTGCTG GTGTCGGCTAAAAATTTGGAAACAAAGATCAGCATTCCTCAACCACCAAGCTCTACACAAGAGCCCGAAGTGCTG GCTCGCATCTTGGAGAAAGTGTACAGTGCCAAGCGTCCGCTCATCTTCGTGGACGGAGAAAGCACAGGTCTTGGT ATCGTCGAGCAGATCGATGCTCTGATCAAAGCAACCAACTGGCCCACATGGACAACCGTGTACGGCAAAGGCCTA GTCAACGAGCAGCTGCCAAATGTGTACGGATTGTACGCAGGAGCCTTTGGCGACAAGTCAGCGCAGGAGTACTTC GACGAGGCAGATTTGATTCTGGCATTCGGACTGCACAATAGCGACTCCAACACCTATTACTTTACGACAATCCCC AAGCCCGCAGTGTCAATCGCCTTTTCAGGCAGTACCGTTCAAATCGACAATGATACTTATCGCGACCTGTCCGCC CGCAACATTCTATCAAACATACTCCAAAGCCTCGACTCCACCCGCCTAGTCAAGGCCACCGGACCCCCGAAACAA GAAATCACATTGGCCAACATCAAAAACACAGACCCCCTCGCGCAAGACAACTTCTACCGCCTGGTAAACCCGCTC TTGCGCGAAGGCGACATAATCCTCACCGAGACGGGCACCGCCTCGCATGGCGGCCGGAACTTCAAACTGCCTCCG AAATGCCGCATCTTCGGCGCGGTCACTTGGCTCTCGATTGGATTCATGCTCCCGGCAACACTAGGCACAGCGCTA GCGCAGCGTGAGCACAACAAGGTCACAGAAAGCAAGAGTCAGACTATTTTGTTCATCGGCGATGGAAGTCTGCAG ATGACAGCGCAGGAGATCAGTGTGATGATCCGTGAGAAGTTGAACATTATTATTTTCATCATCAATAACGAAGGC TATACCATTGAGCGGGTGATCCACGGACGCAAGCAGGTGTACAATGATGTGCCTTTCTGGAGACACGCGCAGGCG CTGAACTATTTCGGAGCTGATCAAGAGCATGCGGCGAATAATAGTTTTACGGCGAGGACCTGTGGCGAGTTGAAG GATGTGTTGGCTAGCGAGCAGATTCAGAATGGATCTGGGGTGAGGCTTGTTGAAGTCTTTATGCATAGGGAGGAT GTGCAGGGAGTTTTGCTGCATTTACTGAACAAGCAACTTGCTCAGGAGAAGGGGGAGGCAGAGCAGCAGAGTTAG |