© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g276.t1 |
| Gene name | |
| Location | scaffold_01:703435..704252 |
| Strand | + |
| Gene length (bp) | 817 |
| Transcript length (bp) | 747 |
| Coding sequence length (bp) | 747 |
| Protein length (aa) | 249 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10342 | Kre9_KNH | Kre9/KNH-like N-terminal Ig-like domain | 2.7E-20 | 28 | 115 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 34.43 | 15.95 | 52.92 |
| 5d_25C | Five days - 25 degrees Celsius | 26.95 | 11.52 | 42.37 |
| 7d_25C | Seven days - 25 degrees Celsius | 23.81 | 9.89 | 37.74 |
| 10d_25C | Ten days - 25 degrees Celsius | 26.01 | 10.93 | 41.08 |
| 7d_15C | Seven days - 15 degrees Celsius | 16.76 | 6.02 | 27.50 |
| 7d_30C | Seven days - 30 degrees Celsius | 28.31 | 12.44 | 44.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.487169 | no |
| 3d_25C | 7d_25C | 0.259851 | no |
| 3d_25C | 7d_15C | 0.029092 | yes |
| 3d_25C | 7d_30C | 0.602394 | no |
| 3d_25C | 10d_25C | 0.431016 | no |
| 5d_25C | 7d_25C | 0.775869 | no |
| 5d_25C | 7d_15C | 0.163666 | no |
| 5d_25C | 7d_30C | 0.919555 | no |
| 5d_25C | 10d_25C | 0.944461 | no |
| 7d_25C | 7d_15C | 0.357281 | no |
| 7d_25C | 7d_30C | 0.675672 | no |
| 7d_25C | 10d_25C | 0.850696 | no |
| 7d_15C | 7d_30C | 0.116026 | no |
| 7d_15C | 10d_25C | 0.218512 | no |
| 7d_30C | 10d_25C | 0.854484 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g276.t1 MRFFISLAVAAMAAVAAANSKANPFSIPVEGYTFKVGEPTALKWEPTTDGTVSLILQWGAVISGNSGTVIASNID NDGSYTWDVPSKLAAQPDYTIKIVSDDDSDDYNYIGRFTVEGSTVEVTSTSSTASSTTASTSTQSSTESSTSTTH TTTSEKSTSTSSATTSSPTTLTTASSTATSTATSTSASSTESSAKSTSASASASGSASSSGAASSTPASQSAVPT TNAGIANRVSGGMLALVAAALML* |
| Coding | >Pro_DTO377G3_2|g276.t1 ATGCGCTTCTTCATCTCTCTCGCTGTCGCCGCCATGGCCGCCGTCGCCGCGGCGAACAGCAAGGCTAACCCCTTC AGCATTCCCGTCGAGGGTTACACCTTCAAGGTCGGCGAGCCTACCGCTCTGAAGTGGGAGCCTACCACCGACGGC ACTGTCAGTTTGATCTTGCAGTGGGGAGCCGTGATCAGCGGTAACTCCGGCACTGTCATTGCCTCGAATATCGAT AACGACGGCAGCTACACATGGGATGTGCCCTCCAAGCTGGCCGCCCAGCCAGACTACACCATTAAGATCGTCTCG GACGATGATAGCGACGACTACAACTACATCGGCCGTTTCACCGTCGAGGGCTCCACCGTCGAGGTCACCTCTACC TCTTCCACTGCCAGCTCGACCACCGCGTCCACTTCCACTCAGTCATCCACCGAGTCATCTACCTCGACCACCCAC ACCACTACCTCGGAGAAGTCGACCTCGACTTCTTCGGCCACCACCAGCTCCCCCACTACTTTGACCACCGCTTCC AGCACTGCCACCAGCACTGCTACCAGCACCTCTGCCTCCTCCACCGAGTCCTCGGCGAAGTCCACCTCGGCCAGC GCCAGCGCCAGCGGTAGCGCCAGCTCCTCGGGCGCTGCTAGCTCCACGCCCGCATCCCAGAGCGCCGTGCCCACC ACCAACGCCGGCATCGCCAACCGTGTCTCCGGTGGCATGCTTGCCCTCGTTGCCGCTGCTCTGATGCTGTAG |
| Transcript | >Pro_DTO377G3_2|g276.t1 ATGCGCTTCTTCATCTCTCTCGCTGTCGCCGCCATGGCCGCCGTCGCCGCGGCGAACAGCAAGGCTAACCCCTTC AGCATTCCCGTCGAGGGTTACACCTTCAAGGTCGGCGAGCCTACCGCTCTGAAGTGGGAGCCTACCACCGACGGC ACTGTCAGTTTGATCTTGCAGTGGGGAGCCGTGATCAGCGGTAACTCCGGCACTGTCATTGCCTCGAATATCGAT AACGACGGCAGCTACACATGGGATGTGCCCTCCAAGCTGGCCGCCCAGCCAGACTACACCATTAAGATCGTCTCG GACGATGATAGCGACGACTACAACTACATCGGCCGTTTCACCGTCGAGGGCTCCACCGTCGAGGTCACCTCTACC TCTTCCACTGCCAGCTCGACCACCGCGTCCACTTCCACTCAGTCATCCACCGAGTCATCTACCTCGACCACCCAC ACCACTACCTCGGAGAAGTCGACCTCGACTTCTTCGGCCACCACCAGCTCCCCCACTACTTTGACCACCGCTTCC AGCACTGCCACCAGCACTGCTACCAGCACCTCTGCCTCCTCCACCGAGTCCTCGGCGAAGTCCACCTCGGCCAGC GCCAGCGCCAGCGGTAGCGCCAGCTCCTCGGGCGCTGCTAGCTCCACGCCCGCATCCCAGAGCGCCGTGCCCACC ACCAACGCCGGCATCGCCAACCGTGTCTCCGGTGGCATGCTTGCCCTCGTTGCCGCTGCTCTGATGCTGTAG |
| Gene | >Pro_DTO377G3_2|g276.t1 ATGCGCTTCTTCATCTCTCTCGCTGTCGCCGCCATGGCCGCCGTCGCCGCGGCGAACAGCAAGGCTAACCCCTTC AGCATTCCCGTCGAGGGTTACACCTTCAAGGTCGGCGAGCCTACCGCTCTGAAGTGGGAGCCTACCACCGACGGC ACTGTCAGTTTGATCTTGCAGTGGGGAGCCGTGATCAGCGGTAACTCCGGCACTGTCATTGCCTGTAAGCAACCT GGGGATCCATCCGAATGACTAATATTCCCCGATAAGGCACCGAGTCTGACTATCACCAGCGAATATCGATAACGA CGGCAGCTACACATGGGATGTGCCCTCCAAGCTGGCCGCCCAGCCAGACTACACCATTAAGATCGTCTCGGACGA TGATAGCGACGACTACAACTACATCGGCCGTTTCACCGTCGAGGGCTCCACCGTCGAGGTCACCTCTACCTCTTC CACTGCCAGCTCGACCACCGCGTCCACTTCCACTCAGTCATCCACCGAGTCATCTACCTCGACCACCCACACCAC TACCTCGGAGAAGTCGACCTCGACTTCTTCGGCCACCACCAGCTCCCCCACTACTTTGACCACCGCTTCCAGCAC TGCCACCAGCACTGCTACCAGCACCTCTGCCTCCTCCACCGAGTCCTCGGCGAAGTCCACCTCGGCCAGCGCCAG CGCCAGCGGTAGCGCCAGCTCCTCGGGCGCTGCTAGCTCCACGCCCGCATCCCAGAGCGCCGTGCCCACCACCAA CGCCGGCATCGCCAACCGTGTCTCCGGTGGCATGCTTGCCCTCGTTGCCGCTGCTCTGATGCTGTAG |