© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2755.t1 |
| Gene name | |
| Location | scaffold_03:874291..875468 |
| Strand | + |
| Gene length (bp) | 1177 |
| Transcript length (bp) | 1017 |
| Coding sequence length (bp) | 1017 |
| Protein length (aa) | 339 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 1.2E-39 | 56 | 271 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 49 | 71 | 22 |
| 3 | 86 | 108 | 22 |
| 4 | 121 | 143 | 22 |
| 5 | 163 | 185 | 22 |
| 6 | 198 | 215 | 17 |
| 7 | 243 | 265 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2755.t1 MLEPRSSYQEGSLWFYAPNKGAAIAFAILFAISGGIHAYQSFKYKSWKVTGLLPWSALLFTGGFITRTIGAFGQW GNIGVYIASTVLLLAGPPVYEGANFFILGRILYYIPYHSPIHPGRVFTTFIALGVAIESITANGAARVASSNSSV SSQNIGKALLKAALIMQIVLMTGFVALAGRFHFNCARGGVLNHKIKHALLVLYCSCTLITIRTIYRTVEYFTAAS LNAYTDLENISPVLKQEWYFWIFEVVLMYSNTTLLNVFHPMRWLPRSNKIYLAEDGVTEIEGPGYDDPRHWLQTF VDPFDIYGLIVSRGKKEKYWESSLTRREDTTIKTAEGA* |
| Coding | >Pro_DTO377G3_2|g2755.t1 ATGCTCGAACCAAGGTCATCTTATCAGGAGGGAAGCTTGTGGTTCTATGCACCTAACAAAGGCGCTGCAATTGCC TTTGCGATTCTCTTCGCTATCTCTGGCGGCATCCATGCATATCAATCCTTCAAATATAAGTCCTGGAAAGTCACC GGACTTCTTCCATGGTCTGCCCTTCTGTTTACGGGAGGTTTTATCACGCGGACTATTGGAGCGTTCGGGCAATGG GGAAATATAGGCGTCTATATAGCAAGCACTGTGCTTCTGCTCGCCGGACCACCAGTATATGAGGGTGCTAACTTC TTCATTTTGGGCCGCATACTCTACTACATCCCATACCACTCCCCAATCCATCCGGGCCGCGTATTCACAACCTTC ATAGCCCTAGGTGTGGCCATCGAGAGCATTACCGCAAACGGAGCGGCCCGAGTCGCAAGTTCAAACTCTAGTGTT AGCTCGCAAAACATAGGCAAGGCGCTACTGAAGGCGGCGCTTATCATGCAAATCGTCCTAATGACAGGCTTTGTG GCCTTGGCGGGCCGATTCCACTTCAACTGCGCCCGAGGAGGCGTATTGAACCACAAGATCAAGCATGCGCTACTG GTGTTATACTGCAGTTGTACCCTCATCACGATTCGTACCATCTATCGCACAGTGGAATACTTTACTGCCGCGAGT CTGAATGCCTACACTGACCTCGAGAATATCAGTCCTGTATTGAAACAGGAATGGTACTTTTGGATCTTTGAGGTT GTGCTCATGTATAGCAATACCACTTTGCTGAATGTCTTTCATCCCATGCGCTGGCTTCCGCGATCAAACAAGATT TATCTCGCTGAAGATGGCGTCACCGAGATTGAGGGCCCTGGCTATGATGATCCCCGTCATTGGCTCCAGACTTTT GTCGATCCATTTGATATCTATGGACTGATCGTTAGTCGAGGCAAGAAAGAGAAGTATTGGGAATCGAGTCTGACT CGGAGAGAGGATACCACCATTAAGACCGCTGAAGGGGCATAG |
| Transcript | >Pro_DTO377G3_2|g2755.t1 ATGCTCGAACCAAGGTCATCTTATCAGGAGGGAAGCTTGTGGTTCTATGCACCTAACAAAGGCGCTGCAATTGCC TTTGCGATTCTCTTCGCTATCTCTGGCGGCATCCATGCATATCAATCCTTCAAATATAAGTCCTGGAAAGTCACC GGACTTCTTCCATGGTCTGCCCTTCTGTTTACGGGAGGTTTTATCACGCGGACTATTGGAGCGTTCGGGCAATGG GGAAATATAGGCGTCTATATAGCAAGCACTGTGCTTCTGCTCGCCGGACCACCAGTATATGAGGGTGCTAACTTC TTCATTTTGGGCCGCATACTCTACTACATCCCATACCACTCCCCAATCCATCCGGGCCGCGTATTCACAACCTTC ATAGCCCTAGGTGTGGCCATCGAGAGCATTACCGCAAACGGAGCGGCCCGAGTCGCAAGTTCAAACTCTAGTGTT AGCTCGCAAAACATAGGCAAGGCGCTACTGAAGGCGGCGCTTATCATGCAAATCGTCCTAATGACAGGCTTTGTG GCCTTGGCGGGCCGATTCCACTTCAACTGCGCCCGAGGAGGCGTATTGAACCACAAGATCAAGCATGCGCTACTG GTGTTATACTGCAGTTGTACCCTCATCACGATTCGTACCATCTATCGCACAGTGGAATACTTTACTGCCGCGAGT CTGAATGCCTACACTGACCTCGAGAATATCAGTCCTGTATTGAAACAGGAATGGTACTTTTGGATCTTTGAGGTT GTGCTCATGTATAGCAATACCACTTTGCTGAATGTCTTTCATCCCATGCGCTGGCTTCCGCGATCAAACAAGATT TATCTCGCTGAAGATGGCGTCACCGAGATTGAGGGCCCTGGCTATGATGATCCCCGTCATTGGCTCCAGACTTTT GTCGATCCATTTGATATCTATGGACTGATCGTTAGTCGAGGCAAGAAAGAGAAGTATTGGGAATCGAGTCTGACT CGGAGAGAGGATACCACCATTAAGACCGCTGAAGGGGCATAG |
| Gene | >Pro_DTO377G3_2|g2755.t1 ATGCTCGAACCAAGGTCATCTTATCGTGAGTCGCCCAAGTCAATCACGATTGATAGTTTATCTGACAAAAAAAGA GGAGGGAAGCTTGTGGTTCTATGCACCTAACAAAGGCGCTGCAATTGCCTTTGCGATTCTCTTCGCTATCTCTGG CGGCATCCATGCATATCAATCCTTGTATGTGACCCCTACCCATTATGAAACTCCAAATTAACCAGATCCCCCAGC AAATATAAGTCCTGGAAAGTCACCGGACTTCTTCCATGGTCTGCCCTTCTGTTTACGGGAGGTTTTATCACGCGG ACTATTGGAGCGTTCGGGCAATGGGGAAATATAGGCGTCTATATAGCAAGCACTGTGCTTCTGCTCGCCGGACCG TAAGGAGTATCCAGCCCATAATGGGATACGCTACTGACAACCAATCTTCGATTATTCTAGACCAGTATATGAGGG TGCTAACTTCTTCATTTTGGGCCGCATACTCTACTACATCCCATACCACTCCCCAATCCATCCGGGCCGCGTATT CACAACCTTCATAGCCCTAGGTGTGGCCATCGAGAGCATTACCGCAAACGGAGCGGCCCGAGTCGCAAGTTCAAA CTCTAGTGTTAGCTCGCAAAACATAGGCAAGGCGCTACTGAAGGCGGCGCTTATCATGCAAATCGTCCTAATGAC AGGCTTTGTGGCCTTGGCGGGCCGATTCCACTTCAACTGCGCCCGAGGAGGCGTATTGAACCACAAGATCAAGCA TGCGCTACTGGTGTTATACTGCAGTTGTACCCTCATCACGATTCGTACCATCTATCGCACAGTGGAATACTTTAC TGCCGCGAGTCTGAATGCCTACACTGACCTCGAGAATATCAGTCCTGTATTGAAACAGGAATGGTACTTTTGGAT CTTTGAGGTTGTGCTCATGTATAGCAATACCACTTTGCTGAATGTCTTTCATCCCATGCGCTGGCTTCCGCGATC AAACAAGATTTATCTCGCTGAAGATGGCGTCACCGAGATTGAGGGCCCTGGCTATGATGATCCCCGTCATTGGCT CCAGACTTTTGTCGATCCATTTGATATCTATGGACTGATCGTTAGTCGAGGCAAGAAAGAGAAGTATTGGGAATC GAGTCTGACTCGGAGAGAGGATACCACCATTAAGACCGCTGAAGGGGCATAG |