© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g275.t1 |
| Gene name | |
| Location | scaffold_01:701048..702658 |
| Strand | + |
| Gene length (bp) | 1610 |
| Transcript length (bp) | 1554 |
| Coding sequence length (bp) | 1554 |
| Protein length (aa) | 518 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10453 | NUFIP1 | Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) | 2.0E-16 | 140 | 183 |
| PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 2.6E-08 | 429 | 452 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 23.67 | 12.67 | 34.67 |
| 5d_25C | Five days - 25 degrees Celsius | 24.28 | 12.95 | 35.60 |
| 7d_25C | Seven days - 25 degrees Celsius | 23.83 | 12.57 | 35.08 |
| 10d_25C | Ten days - 25 degrees Celsius | 25.37 | 13.66 | 37.09 |
| 7d_15C | Seven days - 15 degrees Celsius | 22.98 | 12.12 | 33.85 |
| 7d_30C | Seven days - 30 degrees Celsius | 30.94 | 17.39 | 44.48 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.952316 | no |
| 3d_25C | 7d_25C | 0.988279 | no |
| 3d_25C | 7d_15C | 0.943488 | no |
| 3d_25C | 7d_30C | 0.330395 | no |
| 3d_25C | 10d_25C | 0.853763 | no |
| 5d_25C | 7d_25C | 0.965640 | no |
| 5d_25C | 7d_15C | 0.887694 | no |
| 5d_25C | 7d_30C | 0.389736 | no |
| 5d_25C | 10d_25C | 0.911136 | no |
| 7d_25C | 7d_15C | 0.930454 | no |
| 7d_25C | 7d_30C | 0.355827 | no |
| 7d_25C | 10d_25C | 0.871092 | no |
| 7d_15C | 7d_30C | 0.279542 | no |
| 7d_15C | 10d_25C | 0.785569 | no |
| 7d_30C | 10d_25C | 0.504261 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g275.t1 MMPPISWRNEMQGAVPYMGAQPGQARGPRPPHAYGNQGPKPKNTPKRDHSSAFNKPQSTAPRTPAAPAVPSFGNP LPSKPPPAADSTANRKAKKRKRKHNQLGLTPNTEDHESSEEEVDEDEESKLAQSGSGAAPLQVSYKGKTATLQTP SDIAAWIAERKKKFPTQARVEEKKKSMEEAKAARELTRQQKQKEQQDKRKEHTQKQNEHKTDPAADATTNAQRRE KIRRNLEREEKRIQKAMAETEAARLRMEALQKEALSLNEDFNQDEDTGSTIEQPAPVIKAEPATAVPEPAMKTES ENAVTEPATKTELETAVPEATMKIEPHGPIPEPAQSTVESGDATDAQGVPGLLFESHHLEHTIKTEHPTDHDLDA MELASDHGASDWTSSGASGSDTDSDPDSDDSAPEQVTSRRTGPERVPPPPRQGKKTVCRYFARNGHCNRGDQCKF LHENDSERPSKARAKPTEKKEKETKRKGLYQALLDRQQQDDDRRAMEVIFWLGQNNMLDAPHDTPMN* |
| Coding | >Pro_DTO377G3_2|g275.t1 ATGATGCCTCCCATATCATGGCGCAATGAGATGCAAGGTGCGGTGCCATACATGGGGGCTCAACCGGGGCAAGCA CGAGGGCCACGACCTCCCCATGCGTATGGCAATCAGGGTCCGAAACCCAAGAATACCCCAAAGCGGGATCACTCA TCTGCATTCAACAAACCTCAATCAACTGCGCCTCGAACCCCCGCAGCGCCTGCCGTCCCAAGCTTCGGCAACCCT CTACCCTCGAAGCCACCACCCGCTGCAGACTCGACCGCCAACAGAAAGGCGAAGAAGAGAAAAAGGAAGCACAAT CAACTTGGACTGACCCCTAATACCGAGGACCACGAGTCAAGCGAAGAAGAGGTTGACGAAGACGAAGAATCGAAG CTGGCGCAAAGTGGATCTGGCGCAGCACCACTTCAGGTCTCATACAAAGGGAAAACGGCAACATTACAAACACCG TCCGATATTGCCGCTTGGATTGCAGAACGGAAGAAGAAGTTTCCCACGCAAGCTCGGGTGGAAGAAAAGAAAAAG TCAATGGAGGAGGCAAAGGCAGCCCGCGAGTTGACTCGCCAACAAAAGCAAAAGGAGCAACAGGACAAGCGAAAA GAGCATACACAAAAACAAAATGAACACAAGACAGATCCCGCTGCAGATGCAACGACAAACGCCCAGCGCAGAGAG AAGATTCGGCGCAACCTTGAACGAGAGGAGAAACGAATCCAAAAGGCCATGGCCGAGACCGAAGCTGCTCGCCTC CGAATGGAAGCTTTACAGAAGGAGGCATTGAGCCTAAATGAAGACTTTAACCAAGACGAAGATACGGGTAGCACG ATCGAGCAACCGGCCCCGGTTATCAAAGCTGAACCCGCAACCGCGGTGCCAGAGCCAGCTATGAAAACCGAATCC GAAAACGCGGTAACGGAGCCAGCCACTAAGACTGAACTAGAGACCGCGGTTCCGGAGGCGACCATGAAAATCGAG CCCCATGGCCCAATTCCAGAGCCCGCGCAATCAACCGTGGAAAGCGGGGATGCGACAGATGCGCAAGGCGTTCCT GGGCTTTTGTTCGAGTCCCATCATCTCGAGCACACAATCAAGACCGAGCACCCCACCGACCATGACTTGGATGCC ATGGAGCTCGCATCCGATCACGGGGCCAGTGATTGGACCTCCTCGGGTGCTTCTGGCTCAGATACAGACTCTGAC CCTGACAGCGATGACTCTGCGCCAGAGCAAGTAACTTCACGTCGCACGGGACCAGAGCGAGTGCCACCGCCACCC CGCCAAGGCAAAAAGACCGTCTGCCGCTATTTTGCACGTAATGGCCACTGTAACCGTGGCGACCAGTGTAAATTC CTCCATGAGAATGACTCTGAACGACCCTCCAAGGCCAGGGCAAAGCCTACGGAGAAGAAGGAGAAAGAGACGAAA CGCAAGGGACTTTATCAAGCTTTGCTGGACCGACAGCAGCAAGACGATGACCGCCGGGCAATGGAAGTGATATTC TGGCTCGGTCAGAACAATATGCTGGATGCCCCACACGATACCCCAATGAATTAG |
| Transcript | >Pro_DTO377G3_2|g275.t1 ATGATGCCTCCCATATCATGGCGCAATGAGATGCAAGGTGCGGTGCCATACATGGGGGCTCAACCGGGGCAAGCA CGAGGGCCACGACCTCCCCATGCGTATGGCAATCAGGGTCCGAAACCCAAGAATACCCCAAAGCGGGATCACTCA TCTGCATTCAACAAACCTCAATCAACTGCGCCTCGAACCCCCGCAGCGCCTGCCGTCCCAAGCTTCGGCAACCCT CTACCCTCGAAGCCACCACCCGCTGCAGACTCGACCGCCAACAGAAAGGCGAAGAAGAGAAAAAGGAAGCACAAT CAACTTGGACTGACCCCTAATACCGAGGACCACGAGTCAAGCGAAGAAGAGGTTGACGAAGACGAAGAATCGAAG CTGGCGCAAAGTGGATCTGGCGCAGCACCACTTCAGGTCTCATACAAAGGGAAAACGGCAACATTACAAACACCG TCCGATATTGCCGCTTGGATTGCAGAACGGAAGAAGAAGTTTCCCACGCAAGCTCGGGTGGAAGAAAAGAAAAAG TCAATGGAGGAGGCAAAGGCAGCCCGCGAGTTGACTCGCCAACAAAAGCAAAAGGAGCAACAGGACAAGCGAAAA GAGCATACACAAAAACAAAATGAACACAAGACAGATCCCGCTGCAGATGCAACGACAAACGCCCAGCGCAGAGAG AAGATTCGGCGCAACCTTGAACGAGAGGAGAAACGAATCCAAAAGGCCATGGCCGAGACCGAAGCTGCTCGCCTC CGAATGGAAGCTTTACAGAAGGAGGCATTGAGCCTAAATGAAGACTTTAACCAAGACGAAGATACGGGTAGCACG ATCGAGCAACCGGCCCCGGTTATCAAAGCTGAACCCGCAACCGCGGTGCCAGAGCCAGCTATGAAAACCGAATCC GAAAACGCGGTAACGGAGCCAGCCACTAAGACTGAACTAGAGACCGCGGTTCCGGAGGCGACCATGAAAATCGAG CCCCATGGCCCAATTCCAGAGCCCGCGCAATCAACCGTGGAAAGCGGGGATGCGACAGATGCGCAAGGCGTTCCT GGGCTTTTGTTCGAGTCCCATCATCTCGAGCACACAATCAAGACCGAGCACCCCACCGACCATGACTTGGATGCC ATGGAGCTCGCATCCGATCACGGGGCCAGTGATTGGACCTCCTCGGGTGCTTCTGGCTCAGATACAGACTCTGAC CCTGACAGCGATGACTCTGCGCCAGAGCAAGTAACTTCACGTCGCACGGGACCAGAGCGAGTGCCACCGCCACCC CGCCAAGGCAAAAAGACCGTCTGCCGCTATTTTGCACGTAATGGCCACTGTAACCGTGGCGACCAGTGTAAATTC CTCCATGAGAATGACTCTGAACGACCCTCCAAGGCCAGGGCAAAGCCTACGGAGAAGAAGGAGAAAGAGACGAAA CGCAAGGGACTTTATCAAGCTTTGCTGGACCGACAGCAGCAAGACGATGACCGCCGGGCAATGGAAGTGATATTC TGGCTCGGTCAGAACAATATGCTGGATGCCCCACACGATACCCCAATGAATTAG |
| Gene | >Pro_DTO377G3_2|g275.t1 ATGATGCCTCCCATATCATGGCGCAATGAGATGCAAGGTGCGGTGCCATACATGGGGGCTCAACCGGGGCAAGCA CGAGGGCCACGACCTCCCCATGCGTATGGCAATCAGGGTCCGAAACCCAAGAATACCCCAAAGCGGGATCACTCA TCTGCATTCAACAAACCTCAATCAACTGCGCCTCGAACCCCCGCAGCGCCTGCCGTCCCAAGCTTCGGCAACCCT CTACCCTCGAAGCCACCACCCGCTGCAGACTCGACCGCCAACAGAAAGGCGAAGAAGAGAAAAAGGAAGCACAAT CAACTTGGACTGACCCCTAATACCGAGGACCACGAGTCAAGCGAAGAAGAGGTTGACGAAGACGAAGAATCGAAG CTGGCGCAAAGTGGATCTGGCGCAGCACCACTTCAGGTCTCATACAAAGGGAAAACGGCAACATTACAAACACCG TCCGATATTGCCGCTTGGATTGCAGAACGGAAGAAGAAGTTTCCCACGCAAGCTCGGGTGGAAGAAAAGAAAAAG TCAATGGAGGAGGCAAAGGCAGCCCGCGAGTTGACTCGCCAACAAAAGCAAAAGGAGCAACAGGACAAGCGAAAA GAGCATACACAAAAACAAAATGAACACAAGACAGATCCCGCTGCAGATGCAACGACAAACGCCCAGCGCAGAGAG AAGATTCGGCGCAACCTTGAACGAGAGGAGAAACGAATCCAAAAGGCCATGGCCGAGACCGAAGCTGCTCGCCTC CGAATGGAAGCTTTACAGAAGGAGGCATTGAGCCTAAATGAAGACTTTAACCAAGACGAAGATACGGGTAGCACG ATCGAGCAACCGGCCCCGGTTATCAAAGCTGAACCCGCAACCGCGGTGCCAGAGCCAGCTATGAAAACCGAATCC GAAAACGCGGTAACGGAGCCAGCCACTAAGACTGAACTAGAGACCGCGGTTCCGGAGGCGACCATGAAAATCGAG CCCCATGGCCCAATTCCAGAGCCCGCGCAATCAACCGTGGAAAGCGGGGATGCGACAGATGCGCAAGGCGTTCCT GGGCTTTTGTTCGAGTCCCATCATCTCGAGCACACAATCAAGACCGAGCACCCCACCGACCATGACTTGGATGCC ATGGAGCTCGCATCCGATCACGGGGCCAGTGATTGGACCTCCTCGGGTGCTTCTGGCTCAGATACAGACTCTGAC CCTGACAGCGATGACTCTGCGCCAGAGCAAGTAACTTCACGTCGCACGGGACCAGAGCGAGTGCCACCGCCACCC CGCCAAGGCAAAAAGACCGTCTGCCGCTATTTTGCACGTAATGGCCACTGTAACCGTGGCGACCAGTGTAAATTC CTCCATGAGAATGACTCTGAACGACCCTCCAAGGCCAGGGCAAAGCCTACGGAGAAGAAGGAGAAAGAGACGAAA CGCAAGGGACTTTATCAAGCTGTGAGAGCCTTATTTATTGATTTTGCTCGTATTGAAGCTGTACTGACTGGGATT AGTTGCTGGACCGACAGCAGCAAGACGATGACCGCCGGGCAATGGAAGTGATATTCTGGCTCGGTCAGAACAATA TGCTGGATGCCCCACACGATACCCCAATGAATTAG |