Protein ID | Pro_DTO377G3_2|g275.t1 |
Gene name | |
Location | scaffold_01:701048..702658 |
Strand | + |
Gene length (bp) | 1610 |
Transcript length (bp) | 1554 |
Coding sequence length (bp) | 1554 |
Protein length (aa) | 518 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF10453 | NUFIP1 | Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) | 2.0E-16 | 140 | 183 |
PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 2.6E-08 | 429 | 452 |
GO Term | Description | Terminal node |
---|---|---|
GO:0046872 | metal ion binding | Yes |
GO:0005488 | binding | No |
GO:0043167 | ion binding | No |
GO:0043169 | cation binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 26 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g275.t1 MMPPISWRNEMQGAVPYMGAQPGQARGPRPPHAYGNQGPKPKNTPKRDHSSAFNKPQSTAPRTPAAPAVPSFGNP LPSKPPPAADSTANRKAKKRKRKHNQLGLTPNTEDHESSEEEVDEDEESKLAQSGSGAAPLQVSYKGKTATLQTP SDIAAWIAERKKKFPTQARVEEKKKSMEEAKAARELTRQQKQKEQQDKRKEHTQKQNEHKTDPAADATTNAQRRE KIRRNLEREEKRIQKAMAETEAARLRMEALQKEALSLNEDFNQDEDTGSTIEQPAPVIKAEPATAVPEPAMKTES ENAVTEPATKTELETAVPEATMKIEPHGPIPEPAQSTVESGDATDAQGVPGLLFESHHLEHTIKTEHPTDHDLDA MELASDHGASDWTSSGASGSDTDSDPDSDDSAPEQVTSRRTGPERVPPPPRQGKKTVCRYFARNGHCNRGDQCKF LHENDSERPSKARAKPTEKKEKETKRKGLYQALLDRQQQDDDRRAMEVIFWLGQNNMLDAPHDTPMN* |
Coding | >Pro_DTO377G3_2|g275.t1 ATGATGCCTCCCATATCATGGCGCAATGAGATGCAAGGTGCGGTGCCATACATGGGGGCTCAACCGGGGCAAGCA CGAGGGCCACGACCTCCCCATGCGTATGGCAATCAGGGTCCGAAACCCAAGAATACCCCAAAGCGGGATCACTCA TCTGCATTCAACAAACCTCAATCAACTGCGCCTCGAACCCCCGCAGCGCCTGCCGTCCCAAGCTTCGGCAACCCT CTACCCTCGAAGCCACCACCCGCTGCAGACTCGACCGCCAACAGAAAGGCGAAGAAGAGAAAAAGGAAGCACAAT CAACTTGGACTGACCCCTAATACCGAGGACCACGAGTCAAGCGAAGAAGAGGTTGACGAAGACGAAGAATCGAAG CTGGCGCAAAGTGGATCTGGCGCAGCACCACTTCAGGTCTCATACAAAGGGAAAACGGCAACATTACAAACACCG TCCGATATTGCCGCTTGGATTGCAGAACGGAAGAAGAAGTTTCCCACGCAAGCTCGGGTGGAAGAAAAGAAAAAG TCAATGGAGGAGGCAAAGGCAGCCCGCGAGTTGACTCGCCAACAAAAGCAAAAGGAGCAACAGGACAAGCGAAAA GAGCATACACAAAAACAAAATGAACACAAGACAGATCCCGCTGCAGATGCAACGACAAACGCCCAGCGCAGAGAG AAGATTCGGCGCAACCTTGAACGAGAGGAGAAACGAATCCAAAAGGCCATGGCCGAGACCGAAGCTGCTCGCCTC CGAATGGAAGCTTTACAGAAGGAGGCATTGAGCCTAAATGAAGACTTTAACCAAGACGAAGATACGGGTAGCACG ATCGAGCAACCGGCCCCGGTTATCAAAGCTGAACCCGCAACCGCGGTGCCAGAGCCAGCTATGAAAACCGAATCC GAAAACGCGGTAACGGAGCCAGCCACTAAGACTGAACTAGAGACCGCGGTTCCGGAGGCGACCATGAAAATCGAG CCCCATGGCCCAATTCCAGAGCCCGCGCAATCAACCGTGGAAAGCGGGGATGCGACAGATGCGCAAGGCGTTCCT GGGCTTTTGTTCGAGTCCCATCATCTCGAGCACACAATCAAGACCGAGCACCCCACCGACCATGACTTGGATGCC ATGGAGCTCGCATCCGATCACGGGGCCAGTGATTGGACCTCCTCGGGTGCTTCTGGCTCAGATACAGACTCTGAC CCTGACAGCGATGACTCTGCGCCAGAGCAAGTAACTTCACGTCGCACGGGACCAGAGCGAGTGCCACCGCCACCC CGCCAAGGCAAAAAGACCGTCTGCCGCTATTTTGCACGTAATGGCCACTGTAACCGTGGCGACCAGTGTAAATTC CTCCATGAGAATGACTCTGAACGACCCTCCAAGGCCAGGGCAAAGCCTACGGAGAAGAAGGAGAAAGAGACGAAA CGCAAGGGACTTTATCAAGCTTTGCTGGACCGACAGCAGCAAGACGATGACCGCCGGGCAATGGAAGTGATATTC TGGCTCGGTCAGAACAATATGCTGGATGCCCCACACGATACCCCAATGAATTAG |
Transcript | >Pro_DTO377G3_2|g275.t1 ATGATGCCTCCCATATCATGGCGCAATGAGATGCAAGGTGCGGTGCCATACATGGGGGCTCAACCGGGGCAAGCA CGAGGGCCACGACCTCCCCATGCGTATGGCAATCAGGGTCCGAAACCCAAGAATACCCCAAAGCGGGATCACTCA TCTGCATTCAACAAACCTCAATCAACTGCGCCTCGAACCCCCGCAGCGCCTGCCGTCCCAAGCTTCGGCAACCCT CTACCCTCGAAGCCACCACCCGCTGCAGACTCGACCGCCAACAGAAAGGCGAAGAAGAGAAAAAGGAAGCACAAT CAACTTGGACTGACCCCTAATACCGAGGACCACGAGTCAAGCGAAGAAGAGGTTGACGAAGACGAAGAATCGAAG CTGGCGCAAAGTGGATCTGGCGCAGCACCACTTCAGGTCTCATACAAAGGGAAAACGGCAACATTACAAACACCG TCCGATATTGCCGCTTGGATTGCAGAACGGAAGAAGAAGTTTCCCACGCAAGCTCGGGTGGAAGAAAAGAAAAAG TCAATGGAGGAGGCAAAGGCAGCCCGCGAGTTGACTCGCCAACAAAAGCAAAAGGAGCAACAGGACAAGCGAAAA GAGCATACACAAAAACAAAATGAACACAAGACAGATCCCGCTGCAGATGCAACGACAAACGCCCAGCGCAGAGAG AAGATTCGGCGCAACCTTGAACGAGAGGAGAAACGAATCCAAAAGGCCATGGCCGAGACCGAAGCTGCTCGCCTC CGAATGGAAGCTTTACAGAAGGAGGCATTGAGCCTAAATGAAGACTTTAACCAAGACGAAGATACGGGTAGCACG ATCGAGCAACCGGCCCCGGTTATCAAAGCTGAACCCGCAACCGCGGTGCCAGAGCCAGCTATGAAAACCGAATCC GAAAACGCGGTAACGGAGCCAGCCACTAAGACTGAACTAGAGACCGCGGTTCCGGAGGCGACCATGAAAATCGAG CCCCATGGCCCAATTCCAGAGCCCGCGCAATCAACCGTGGAAAGCGGGGATGCGACAGATGCGCAAGGCGTTCCT GGGCTTTTGTTCGAGTCCCATCATCTCGAGCACACAATCAAGACCGAGCACCCCACCGACCATGACTTGGATGCC ATGGAGCTCGCATCCGATCACGGGGCCAGTGATTGGACCTCCTCGGGTGCTTCTGGCTCAGATACAGACTCTGAC CCTGACAGCGATGACTCTGCGCCAGAGCAAGTAACTTCACGTCGCACGGGACCAGAGCGAGTGCCACCGCCACCC CGCCAAGGCAAAAAGACCGTCTGCCGCTATTTTGCACGTAATGGCCACTGTAACCGTGGCGACCAGTGTAAATTC CTCCATGAGAATGACTCTGAACGACCCTCCAAGGCCAGGGCAAAGCCTACGGAGAAGAAGGAGAAAGAGACGAAA CGCAAGGGACTTTATCAAGCTTTGCTGGACCGACAGCAGCAAGACGATGACCGCCGGGCAATGGAAGTGATATTC TGGCTCGGTCAGAACAATATGCTGGATGCCCCACACGATACCCCAATGAATTAG |
Gene | >Pro_DTO377G3_2|g275.t1 ATGATGCCTCCCATATCATGGCGCAATGAGATGCAAGGTGCGGTGCCATACATGGGGGCTCAACCGGGGCAAGCA CGAGGGCCACGACCTCCCCATGCGTATGGCAATCAGGGTCCGAAACCCAAGAATACCCCAAAGCGGGATCACTCA TCTGCATTCAACAAACCTCAATCAACTGCGCCTCGAACCCCCGCAGCGCCTGCCGTCCCAAGCTTCGGCAACCCT CTACCCTCGAAGCCACCACCCGCTGCAGACTCGACCGCCAACAGAAAGGCGAAGAAGAGAAAAAGGAAGCACAAT CAACTTGGACTGACCCCTAATACCGAGGACCACGAGTCAAGCGAAGAAGAGGTTGACGAAGACGAAGAATCGAAG CTGGCGCAAAGTGGATCTGGCGCAGCACCACTTCAGGTCTCATACAAAGGGAAAACGGCAACATTACAAACACCG TCCGATATTGCCGCTTGGATTGCAGAACGGAAGAAGAAGTTTCCCACGCAAGCTCGGGTGGAAGAAAAGAAAAAG TCAATGGAGGAGGCAAAGGCAGCCCGCGAGTTGACTCGCCAACAAAAGCAAAAGGAGCAACAGGACAAGCGAAAA GAGCATACACAAAAACAAAATGAACACAAGACAGATCCCGCTGCAGATGCAACGACAAACGCCCAGCGCAGAGAG AAGATTCGGCGCAACCTTGAACGAGAGGAGAAACGAATCCAAAAGGCCATGGCCGAGACCGAAGCTGCTCGCCTC CGAATGGAAGCTTTACAGAAGGAGGCATTGAGCCTAAATGAAGACTTTAACCAAGACGAAGATACGGGTAGCACG ATCGAGCAACCGGCCCCGGTTATCAAAGCTGAACCCGCAACCGCGGTGCCAGAGCCAGCTATGAAAACCGAATCC GAAAACGCGGTAACGGAGCCAGCCACTAAGACTGAACTAGAGACCGCGGTTCCGGAGGCGACCATGAAAATCGAG CCCCATGGCCCAATTCCAGAGCCCGCGCAATCAACCGTGGAAAGCGGGGATGCGACAGATGCGCAAGGCGTTCCT GGGCTTTTGTTCGAGTCCCATCATCTCGAGCACACAATCAAGACCGAGCACCCCACCGACCATGACTTGGATGCC ATGGAGCTCGCATCCGATCACGGGGCCAGTGATTGGACCTCCTCGGGTGCTTCTGGCTCAGATACAGACTCTGAC CCTGACAGCGATGACTCTGCGCCAGAGCAAGTAACTTCACGTCGCACGGGACCAGAGCGAGTGCCACCGCCACCC CGCCAAGGCAAAAAGACCGTCTGCCGCTATTTTGCACGTAATGGCCACTGTAACCGTGGCGACCAGTGTAAATTC CTCCATGAGAATGACTCTGAACGACCCTCCAAGGCCAGGGCAAAGCCTACGGAGAAGAAGGAGAAAGAGACGAAA CGCAAGGGACTTTATCAAGCTGTGAGAGCCTTATTTATTGATTTTGCTCGTATTGAAGCTGTACTGACTGGGATT AGTTGCTGGACCGACAGCAGCAAGACGATGACCGCCGGGCAATGGAAGTGATATTCTGGCTCGGTCAGAACAATA TGCTGGATGCCCCACACGATACCCCAATGAATTAG |