© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2725.t1 |
| Gene name | |
| Location | scaffold_03:787956..788809 |
| Strand | + |
| Gene length (bp) | 853 |
| Transcript length (bp) | 759 |
| Coding sequence length (bp) | 759 |
| Protein length (aa) | 253 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02798 | GST_N | Glutathione S-transferase, N-terminal domain | 1.5E-13 | 5 | 83 |
| PF13417 | GST_N_3 | Glutathione S-transferase, N-terminal domain | 1.5E-12 | 8 | 86 |
| PF13409 | GST_N_2 | Glutathione S-transferase, N-terminal domain | 1.7E-10 | 18 | 84 |
| PF00043 | GST_C | Glutathione S-transferase, C-terminal domain | 4.3E-08 | 142 | 205 |
| PF14497 | GST_C_3 | Glutathione S-transferase, C-terminal domain | 7.8E-06 | 144 | 206 |
| PF13410 | GST_C_2 | Glutathione S-transferase, C-terminal domain | 1.3E-05 | 136 | 197 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0006749 | glutathione metabolic process | Yes |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006575 | cellular modified amino acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 58.00 | 31.25 | 84.76 |
| 5d_25C | Five days - 25 degrees Celsius | 59.25 | 31.97 | 86.52 |
| 7d_25C | Seven days - 25 degrees Celsius | 51.69 | 27.02 | 76.37 |
| 10d_25C | Ten days - 25 degrees Celsius | 65.55 | 36.19 | 94.91 |
| 7d_15C | Seven days - 15 degrees Celsius | 87.86 | 49.70 | 126.02 |
| 7d_30C | Seven days - 30 degrees Celsius | 42.42 | 20.87 | 63.98 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.959308 | no |
| 3d_25C | 7d_25C | 0.740730 | no |
| 3d_25C | 7d_15C | 0.089066 | no |
| 3d_25C | 7d_30C | 0.275260 | no |
| 3d_25C | 10d_25C | 0.718909 | no |
| 5d_25C | 7d_25C | 0.684996 | no |
| 5d_25C | 7d_15C | 0.115777 | no |
| 5d_25C | 7d_30C | 0.235261 | no |
| 5d_25C | 10d_25C | 0.771784 | no |
| 7d_25C | 7d_15C | 0.025858 | yes |
| 7d_25C | 7d_30C | 0.534889 | no |
| 7d_25C | 10d_25C | 0.416144 | no |
| 7d_15C | 7d_30C | 0.002297 | yes |
| 7d_15C | 10d_25C | 0.265560 | no |
| 7d_30C | 10d_25C | 0.100169 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2725.t1 MPEPTITLYTTQTPNGIKISIALEMLGLQYRVEKIDISRNVQKEDWFLKINPNGRIPALTDLFSDGKEIRLFESG SILEYLAEQYDHDNKISFPRGTREYYAMKNWLFFQNAGLGPMQGQANHFTRYAPERIEYGVNRYVNECRRLYGVL DKHLATCQSGWLVGDHVSIADISHWGWIAAAGWADIDIDEFPNVKAWEKLMASHPGTESGRHVPSPHTIKDLIQN KAAVDKTAAEARSWIQQGMQAQAKGKV* |
| Coding | >Pro_DTO377G3_2|g2725.t1 ATGCCAGAACCAACTATTACCCTCTACACAACCCAGACCCCCAATGGAATCAAAATATCCATAGCGCTAGAGATG CTTGGCCTGCAATATAGGGTCGAGAAGATTGACATATCGAGGAACGTTCAAAAGGAAGACTGGTTTCTCAAAATC AACCCCAATGGCCGCATCCCTGCCTTGACAGACCTCTTTAGCGATGGAAAGGAGATCCGGCTATTTGAGTCTGGT AGCATTCTAGAATATCTGGCAGAGCAGTACGATCACGACAACAAGATCTCATTCCCCAGGGGCACGCGGGAATAC TACGCTATGAAGAACTGGCTGTTCTTCCAGAATGCGGGCCTAGGACCTATGCAAGGCCAAGCCAACCACTTCACA CGGTATGCGCCTGAGCGCATTGAGTACGGCGTGAACCGTTATGTCAACGAATGTCGCCGATTGTATGGTGTTTTA GACAAACATCTTGCTACGTGTCAGTCTGGTTGGCTTGTCGGTGACCATGTCTCTATTGCCGATATCTCACACTGG GGATGGATAGCTGCTGCGGGATGGGCTGATATCGATATTGACGAATTCCCGAATGTTAAGGCTTGGGAGAAGCTT ATGGCTTCGCATCCAGGTACTGAGAGTGGTCGTCATGTCCCTTCTCCTCATACCATTAAAGATCTAATTCAGAAT AAGGCAGCTGTGGATAAAACGGCTGCTGAAGCCAGGTCTTGGATTCAACAGGGGATGCAGGCCCAGGCTAAAGGC AAAGTTTAA |
| Transcript | >Pro_DTO377G3_2|g2725.t1 ATGCCAGAACCAACTATTACCCTCTACACAACCCAGACCCCCAATGGAATCAAAATATCCATAGCGCTAGAGATG CTTGGCCTGCAATATAGGGTCGAGAAGATTGACATATCGAGGAACGTTCAAAAGGAAGACTGGTTTCTCAAAATC AACCCCAATGGCCGCATCCCTGCCTTGACAGACCTCTTTAGCGATGGAAAGGAGATCCGGCTATTTGAGTCTGGT AGCATTCTAGAATATCTGGCAGAGCAGTACGATCACGACAACAAGATCTCATTCCCCAGGGGCACGCGGGAATAC TACGCTATGAAGAACTGGCTGTTCTTCCAGAATGCGGGCCTAGGACCTATGCAAGGCCAAGCCAACCACTTCACA CGGTATGCGCCTGAGCGCATTGAGTACGGCGTGAACCGTTATGTCAACGAATGTCGCCGATTGTATGGTGTTTTA GACAAACATCTTGCTACGTGTCAGTCTGGTTGGCTTGTCGGTGACCATGTCTCTATTGCCGATATCTCACACTGG GGATGGATAGCTGCTGCGGGATGGGCTGATATCGATATTGACGAATTCCCGAATGTTAAGGCTTGGGAGAAGCTT ATGGCTTCGCATCCAGGTACTGAGAGTGGTCGTCATGTCCCTTCTCCTCATACCATTAAAGATCTAATTCAGAAT AAGGCAGCTGTGGATAAAACGGCTGCTGAAGCCAGGTCTTGGATTCAACAGGGGATGCAGGCCCAGGCTAAAGGC AAAGTTTAA |
| Gene | >Pro_DTO377G3_2|g2725.t1 ATGCCAGAACCAACTATTACCCTCTACACAACCCAGACCCCCAATGGAATCAAAATATCCATAGCGCTAGAGATG CTTGGGTACAGTAGTTTCCTCGACCTTCTGACGCTTGGTACTAAGAGTGTAGCCTGCAATATAGGGTCGAGAAGA TTGACATATCGAGGAACGTTCAAAAGGAAGAGTATGTCTTTACAAATACCCACACAAACAAAGCTAACTACCGTA AAGCTGGTTTCTCAAAATCAACCCCAATGGCCGCATCCCTGCCTTGACAGACCTCTTTAGCGATGGAAAGGAGAT CCGGCTATTTGAGTCTGGTAGCATTCTAGAATATCTGGCAGAGCAGTACGATCACGACAACAAGATCTCATTCCC CAGGGGCACGCGGGAATACTACGCTATGAAGAACTGGCTGTTCTTCCAGAATGCGGGCCTAGGACCTATGCAAGG CCAAGCCAACCACTTCACACGGTATGCGCCTGAGCGCATTGAGTACGGCGTGAACCGTTATGTCAACGAATGTCG CCGATTGTATGGTGTTTTAGACAAACATCTTGCTACGTGTCAGTCTGGTTGGCTTGTCGGTGACCATGTCTCTAT TGCCGATATCTCACACTGGGGATGGATAGCTGCTGCGGGATGGGCTGATATCGATATTGACGAATTCCCGAATGT TAAGGCTTGGGAGAAGCTTATGGCTTCGCATCCAGGTACTGAGAGTGGTCGTCATGTCCCTTCTCCTCATACCAT TAAAGATCTAATTCAGAATAAGGCAGCTGTGGATAAAACGGCTGCTGAAGCCAGGTCTTGGATTCAACAGGGGAT GCAGGCCCAGGCTAAAGGCAAAGTTTAA |