© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2724.t1 |
| Gene name | |
| Location | scaffold_03:785308..787099 |
| Strand | + |
| Gene length (bp) | 1791 |
| Transcript length (bp) | 1791 |
| Coding sequence length (bp) | 1791 |
| Protein length (aa) | 597 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08030 | NAD_binding_6 | Ferric reductase NAD binding domain | 1.1E-16 | 447 | 578 |
| PF01794 | Ferric_reduct | Ferric reductase like transmembrane component | 6.2E-17 | 161 | 278 |
| PF08022 | FAD_binding_8 | FAD-binding domain | 1.4E-07 | 324 | 372 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 39 | 61 | 22 |
| 2 | 124 | 146 | 22 |
| 3 | 161 | 183 | 22 |
| 4 | 195 | 217 | 22 |
| 5 | 232 | 254 | 22 |
| 6 | 267 | 289 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 57.26 | 33.80 | 80.72 |
| 5d_25C | Five days - 25 degrees Celsius | 36.47 | 20.28 | 52.66 |
| 7d_25C | Seven days - 25 degrees Celsius | 35.23 | 19.57 | 50.89 |
| 10d_25C | Ten days - 25 degrees Celsius | 21.69 | 10.66 | 32.71 |
| 7d_15C | Seven days - 15 degrees Celsius | 40.63 | 19.64 | 61.63 |
| 7d_30C | Seven days - 30 degrees Celsius | 39.54 | 21.22 | 57.85 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.047696 | yes |
| 3d_25C | 7d_25C | 0.030233 | yes |
| 3d_25C | 7d_15C | 0.203510 | no |
| 3d_25C | 7d_30C | 0.134928 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.927554 | no |
| 5d_25C | 7d_15C | 0.762077 | no |
| 5d_25C | 7d_30C | 0.819349 | no |
| 5d_25C | 10d_25C | 0.041603 | yes |
| 7d_25C | 7d_15C | 0.680195 | no |
| 7d_25C | 7d_30C | 0.734210 | no |
| 7d_25C | 10d_25C | 0.060029 | no |
| 7d_15C | 7d_30C | 0.950209 | no |
| 7d_15C | 10d_25C | 0.019353 | yes |
| 7d_30C | 10d_25C | 0.017204 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2724.t1 MHSFLLAMSLAGLTSATDIEYIEKRSGYSVYYEAINDSLARYTILALGCAAAAYYIWQLVFCFSRHLRRLASFND DRQRYFVSTHNTFAWIKEHIIYAALFRNRHNLELQLSSAINMGTLPSRFHAFLITGVIAMNVTLCCVTTPYGTET DTLAGVIRNRTGVMATVNLIPLILMAGRSNPLIAMLHVPFGTWNLLHRWLGRIVVLESLAHVFAWAIPKAQAKGW KVVGMALGGSSFLLTGLVAACAFTALLLHSPSPIRHAFYETFLHLHIAITAVSMGFLWVHLNGLPAQAYLLAALI LWALERATRFLIIVYRNCGRESTTATIEALHGDAMRITLRLARPWTFRPGQHIYLYIPAVGLWTSHPFSVGWSET ADSHSDEKSLPLTSKDILNAPQKETISLLVRRRTGMTDKLFQRASNSPTSQITLRAFAEGPYGNIHTMDSYGTVM LFAGGVGITHHVPFVRHLVAGFANGTVAARRVTLVWIIQSPEHLEWIRPWMTSILAMDRRREVLRIMLFITRPRN TKEIQSPSATVQMFPGRPNIDTLVGMEVENQIGAMGVLVCGNGGLSDDVRRVCRKRQAQSSVDYVEESFSW* |
| Coding | >Pro_DTO377G3_2|g2724.t1 ATGCACTCCTTTCTGCTGGCGATGTCCCTCGCTGGGCTGACCAGTGCGACGGATATTGAATACATCGAAAAACGA TCGGGTTACTCTGTCTACTACGAAGCCATCAACGATAGTCTGGCACGCTATACAATCCTTGCCCTTGGCTGTGCT GCCGCCGCTTATTACATCTGGCAGCTCGTCTTCTGCTTCTCTCGCCACCTTCGACGCCTGGCAAGCTTTAACGAT GACCGGCAACGGTACTTCGTCTCAACACACAATACCTTTGCCTGGATCAAGGAGCATATAATCTATGCTGCATTG TTCCGAAACCGACACAACCTTGAACTCCAGCTCTCGTCAGCTATTAACATGGGTACTTTGCCTAGCCGCTTCCAT GCGTTCCTTATCACCGGCGTTATCGCCATGAACGTCACGCTTTGCTGTGTGACAACTCCTTATGGAACCGAAACA GACACGCTTGCTGGTGTCATTCGTAACCGTACCGGCGTGATGGCAACGGTGAACTTGATCCCATTGATCTTGATG GCAGGCCGTAGCAACCCTCTAATTGCTATGCTCCATGTGCCTTTTGGTACATGGAATCTGCTCCACCGATGGCTC GGCCGCATCGTGGTGCTGGAGAGTCTTGCACATGTGTTTGCATGGGCTATTCCCAAAGCCCAAGCGAAAGGCTGG AAGGTTGTCGGAATGGCTCTGGGTGGTAGCAGCTTTTTGCTGACTGGCTTGGTGGCTGCTTGCGCGTTCACTGCG CTCTTGCTGCATTCGCCCTCGCCTATTCGCCATGCATTCTATGAGACATTCCTCCATTTGCACATTGCCATTACG GCAGTTTCCATGGGTTTCCTCTGGGTCCATCTCAACGGGCTGCCAGCGCAAGCCTATCTACTTGCTGCCCTCATC CTCTGGGCACTCGAGCGAGCCACCCGCTTCTTAATCATTGTGTACCGCAACTGCGGTCGTGAATCCACCACCGCA ACCATCGAGGCTTTGCACGGCGACGCAATGCGCATTACCCTGCGCCTAGCCCGCCCCTGGACCTTCCGTCCGGGT CAGCACATCTACCTCTACATCCCAGCAGTGGGCTTGTGGACCTCACACCCGTTCTCCGTTGGCTGGAGTGAAACG GCAGACAGTCATTCCGACGAGAAGTCTCTCCCACTCACAAGCAAAGACATCCTCAATGCGCCCCAAAAAGAAACC ATCTCTCTCCTCGTCCGCCGCCGGACCGGAATGACCGACAAGCTCTTCCAGCGCGCTTCAAACTCCCCGACCTCA CAGATTACCCTCCGCGCCTTCGCCGAGGGTCCATATGGCAACATTCACACCATGGACTCATACGGTACGGTGATG CTCTTCGCCGGCGGAGTCGGCATCACCCACCACGTCCCCTTCGTCCGTCATCTGGTCGCCGGGTTCGCGAATGGC ACCGTCGCCGCCCGCCGCGTCACCCTCGTCTGGATTATCCAGTCCCCCGAACACTTGGAGTGGATCCGGCCCTGG ATGACCAGTATCTTGGCAATGGATCGCCGCCGTGAAGTCCTGCGCATTATGCTCTTTATTACACGGCCGCGCAAC ACCAAGGAGATCCAGAGCCCCTCTGCAACCGTGCAGATGTTCCCTGGCCGTCCGAATATTGACACACTGGTCGGT ATGGAGGTCGAGAATCAAATTGGTGCCATGGGCGTTCTTGTCTGCGGCAATGGCGGTCTGAGTGATGACGTTCGC CGTGTTTGTCGAAAGAGGCAGGCTCAGTCTAGTGTTGATTATGTGGAAGAGAGTTTCTCTTGGTAG |
| Transcript | >Pro_DTO377G3_2|g2724.t1 ATGCACTCCTTTCTGCTGGCGATGTCCCTCGCTGGGCTGACCAGTGCGACGGATATTGAATACATCGAAAAACGA TCGGGTTACTCTGTCTACTACGAAGCCATCAACGATAGTCTGGCACGCTATACAATCCTTGCCCTTGGCTGTGCT GCCGCCGCTTATTACATCTGGCAGCTCGTCTTCTGCTTCTCTCGCCACCTTCGACGCCTGGCAAGCTTTAACGAT GACCGGCAACGGTACTTCGTCTCAACACACAATACCTTTGCCTGGATCAAGGAGCATATAATCTATGCTGCATTG TTCCGAAACCGACACAACCTTGAACTCCAGCTCTCGTCAGCTATTAACATGGGTACTTTGCCTAGCCGCTTCCAT GCGTTCCTTATCACCGGCGTTATCGCCATGAACGTCACGCTTTGCTGTGTGACAACTCCTTATGGAACCGAAACA GACACGCTTGCTGGTGTCATTCGTAACCGTACCGGCGTGATGGCAACGGTGAACTTGATCCCATTGATCTTGATG GCAGGCCGTAGCAACCCTCTAATTGCTATGCTCCATGTGCCTTTTGGTACATGGAATCTGCTCCACCGATGGCTC GGCCGCATCGTGGTGCTGGAGAGTCTTGCACATGTGTTTGCATGGGCTATTCCCAAAGCCCAAGCGAAAGGCTGG AAGGTTGTCGGAATGGCTCTGGGTGGTAGCAGCTTTTTGCTGACTGGCTTGGTGGCTGCTTGCGCGTTCACTGCG CTCTTGCTGCATTCGCCCTCGCCTATTCGCCATGCATTCTATGAGACATTCCTCCATTTGCACATTGCCATTACG GCAGTTTCCATGGGTTTCCTCTGGGTCCATCTCAACGGGCTGCCAGCGCAAGCCTATCTACTTGCTGCCCTCATC CTCTGGGCACTCGAGCGAGCCACCCGCTTCTTAATCATTGTGTACCGCAACTGCGGTCGTGAATCCACCACCGCA ACCATCGAGGCTTTGCACGGCGACGCAATGCGCATTACCCTGCGCCTAGCCCGCCCCTGGACCTTCCGTCCGGGT CAGCACATCTACCTCTACATCCCAGCAGTGGGCTTGTGGACCTCACACCCGTTCTCCGTTGGCTGGAGTGAAACG GCAGACAGTCATTCCGACGAGAAGTCTCTCCCACTCACAAGCAAAGACATCCTCAATGCGCCCCAAAAAGAAACC ATCTCTCTCCTCGTCCGCCGCCGGACCGGAATGACCGACAAGCTCTTCCAGCGCGCTTCAAACTCCCCGACCTCA CAGATTACCCTCCGCGCCTTCGCCGAGGGTCCATATGGCAACATTCACACCATGGACTCATACGGTACGGTGATG CTCTTCGCCGGCGGAGTCGGCATCACCCACCACGTCCCCTTCGTCCGTCATCTGGTCGCCGGGTTCGCGAATGGC ACCGTCGCCGCCCGCCGCGTCACCCTCGTCTGGATTATCCAGTCCCCCGAACACTTGGAGTGGATCCGGCCCTGG ATGACCAGTATCTTGGCAATGGATCGCCGCCGTGAAGTCCTGCGCATTATGCTCTTTATTACACGGCCGCGCAAC ACCAAGGAGATCCAGAGCCCCTCTGCAACCGTGCAGATGTTCCCTGGCCGTCCGAATATTGACACACTGGTCGGT ATGGAGGTCGAGAATCAAATTGGTGCCATGGGCGTTCTTGTCTGCGGCAATGGCGGTCTGAGTGATGACGTTCGC CGTGTTTGTCGAAAGAGGCAGGCTCAGTCTAGTGTTGATTATGTGGAAGAGAGTTTCTCTTGGTAG |
| Gene | >Pro_DTO377G3_2|g2724.t1 ATGCACTCCTTTCTGCTGGCGATGTCCCTCGCTGGGCTGACCAGTGCGACGGATATTGAATACATCGAAAAACGA TCGGGTTACTCTGTCTACTACGAAGCCATCAACGATAGTCTGGCACGCTATACAATCCTTGCCCTTGGCTGTGCT GCCGCCGCTTATTACATCTGGCAGCTCGTCTTCTGCTTCTCTCGCCACCTTCGACGCCTGGCAAGCTTTAACGAT GACCGGCAACGGTACTTCGTCTCAACACACAATACCTTTGCCTGGATCAAGGAGCATATAATCTATGCTGCATTG TTCCGAAACCGACACAACCTTGAACTCCAGCTCTCGTCAGCTATTAACATGGGTACTTTGCCTAGCCGCTTCCAT GCGTTCCTTATCACCGGCGTTATCGCCATGAACGTCACGCTTTGCTGTGTGACAACTCCTTATGGAACCGAAACA GACACGCTTGCTGGTGTCATTCGTAACCGTACCGGCGTGATGGCAACGGTGAACTTGATCCCATTGATCTTGATG GCAGGCCGTAGCAACCCTCTAATTGCTATGCTCCATGTGCCTTTTGGTACATGGAATCTGCTCCACCGATGGCTC GGCCGCATCGTGGTGCTGGAGAGTCTTGCACATGTGTTTGCATGGGCTATTCCCAAAGCCCAAGCGAAAGGCTGG AAGGTTGTCGGAATGGCTCTGGGTGGTAGCAGCTTTTTGCTGACTGGCTTGGTGGCTGCTTGCGCGTTCACTGCG CTCTTGCTGCATTCGCCCTCGCCTATTCGCCATGCATTCTATGAGACATTCCTCCATTTGCACATTGCCATTACG GCAGTTTCCATGGGTTTCCTCTGGGTCCATCTCAACGGGCTGCCAGCGCAAGCCTATCTACTTGCTGCCCTCATC CTCTGGGCACTCGAGCGAGCCACCCGCTTCTTAATCATTGTGTACCGCAACTGCGGTCGTGAATCCACCACCGCA ACCATCGAGGCTTTGCACGGCGACGCAATGCGCATTACCCTGCGCCTAGCCCGCCCCTGGACCTTCCGTCCGGGT CAGCACATCTACCTCTACATCCCAGCAGTGGGCTTGTGGACCTCACACCCGTTCTCCGTTGGCTGGAGTGAAACG GCAGACAGTCATTCCGACGAGAAGTCTCTCCCACTCACAAGCAAAGACATCCTCAATGCGCCCCAAAAAGAAACC ATCTCTCTCCTCGTCCGCCGCCGGACCGGAATGACCGACAAGCTCTTCCAGCGCGCTTCAAACTCCCCGACCTCA CAGATTACCCTCCGCGCCTTCGCCGAGGGTCCATATGGCAACATTCACACCATGGACTCATACGGTACGGTGATG CTCTTCGCCGGCGGAGTCGGCATCACCCACCACGTCCCCTTCGTCCGTCATCTGGTCGCCGGGTTCGCGAATGGC ACCGTCGCCGCCCGCCGCGTCACCCTCGTCTGGATTATCCAGTCCCCCGAACACTTGGAGTGGATCCGGCCCTGG ATGACCAGTATCTTGGCAATGGATCGCCGCCGTGAAGTCCTGCGCATTATGCTCTTTATTACACGGCCGCGCAAC ACCAAGGAGATCCAGAGCCCCTCTGCAACCGTGCAGATGTTCCCTGGCCGTCCGAATATTGACACACTGGTCGGT ATGGAGGTCGAGAATCAAATTGGTGCCATGGGCGTTCTTGTCTGCGGCAATGGCGGTCTGAGTGATGACGTTCGC CGTGTTTGTCGAAAGAGGCAGGCTCAGTCTAGTGTTGATTATGTGGAAGAGAGTTTCTCTTGGTAG |