© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2719.t1 |
| Gene name | |
| Location | scaffold_03:769545..770550 |
| Strand | + |
| Gene length (bp) | 1005 |
| Transcript length (bp) | 897 |
| Coding sequence length (bp) | 897 |
| Protein length (aa) | 299 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 7.3E-72 | 60 | 272 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 22 | 44 | 22 |
| 2 | 56 | 78 | 22 |
| 3 | 91 | 113 | 22 |
| 4 | 126 | 148 | 22 |
| 5 | 168 | 190 | 22 |
| 6 | 203 | 225 | 22 |
| 7 | 245 | 264 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.89 | 0.42 | 5.37 |
| 5d_25C | Five days - 25 degrees Celsius | 2.62 | 0.25 | 4.98 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.69 | 0.02 | 3.37 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.43 | 0.29 | 4.57 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.66 | 0.31 | 5.01 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.08 | 0.08 | 4.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.887876 | no |
| 3d_25C | 7d_25C | 0.366977 | no |
| 3d_25C | 7d_15C | 0.908308 | no |
| 3d_25C | 7d_30C | 0.611676 | no |
| 3d_25C | 10d_25C | 0.798027 | no |
| 5d_25C | 7d_25C | 0.474420 | no |
| 5d_25C | 7d_15C | 0.984077 | no |
| 5d_25C | 7d_30C | 0.736028 | no |
| 5d_25C | 10d_25C | 0.919555 | no |
| 7d_25C | 7d_15C | 0.464423 | no |
| 7d_25C | 7d_30C | 0.796397 | no |
| 7d_25C | 10d_25C | 0.579508 | no |
| 7d_15C | 7d_30C | 0.721053 | no |
| 7d_15C | 10d_25C | 0.906626 | no |
| 7d_30C | 10d_25C | 0.835860 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2719.t1 MVDVLELQYGCPAYIEGVGTSYGYIPSLGAGIAFCTLFGLSLIIHTIQFIWKRQWWASVFSVGCLVEVIGWAGRT WSAKCPYNGTAFLMQISTLIIAPTFFTAGIYVVLGRFIQILGRESSFLKPSLYLWIFCTCDVISLVVQAIGGGMA SGEANTVGGDTATGTHIMVAGIVFQLFSVTIFVICAVDFIRRVMRKNLLQPGSGSILPLFGAMVLSIICIYVRSI YRTIELSEGWDGYLISHESYFIGLDGAMMIVSVAVFNVLHPGWMLNNEKADSYKTERTSVDQPDRYGGPPTHW* |
| Coding | >Pro_DTO377G3_2|g2719.t1 ATGGTCGACGTGCTAGAGCTGCAATACGGCTGTCCTGCCTATATCGAAGGCGTTGGCACCTCATATGGATATATC CCATCGCTAGGAGCAGGCATTGCCTTCTGCACCCTATTTGGCCTCTCGTTGATTATCCATACAATCCAGTTCATA TGGAAGCGACAATGGTGGGCAAGTGTGTTTAGTGTGGGATGTTTGGTCGAAGTAATCGGCTGGGCCGGTCGTACC TGGTCAGCCAAATGTCCATACAACGGAACTGCCTTCCTAATGCAGATCTCCACCCTCATCATCGCCCCAACTTTC TTCACAGCAGGAATCTACGTCGTCCTAGGCCGCTTCATTCAAATCCTCGGCCGCGAATCCTCCTTCCTGAAGCCA AGCCTGTACCTATGGATCTTCTGCACCTGCGACGTAATCTCCCTCGTCGTCCAAGCCATCGGCGGCGGCATGGCC TCCGGAGAAGCCAATACGGTCGGCGGCGACACCGCAACTGGCACGCACATCATGGTCGCTGGAATTGTCTTCCAG CTCTTCTCGGTAACCATATTCGTCATTTGCGCGGTCGACTTCATCCGCCGCGTTATGCGCAAGAATCTGCTGCAG CCGGGGTCCGGCTCGATCCTTCCCCTGTTCGGGGCGATGGTACTTTCCATCATCTGTATCTATGTTCGGAGTATC TATCGTACGATCGAGTTGTCGGAGGGATGGGATGGTTATCTCATTTCTCACGAGTCGTACTTTATTGGGCTCGAT GGGGCTATGATGATTGTTTCGGTGGCTGTGTTTAATGTGCTGCATCCTGGATGGATGTTGAATAACGAGAAGGCT GATTCGTATAAAACCGAGCGCACTTCGGTTGATCAACCGGACAGGTACGGGGGGCCGCCGACTCACTGGTGA |
| Transcript | >Pro_DTO377G3_2|g2719.t1 ATGGTCGACGTGCTAGAGCTGCAATACGGCTGTCCTGCCTATATCGAAGGCGTTGGCACCTCATATGGATATATC CCATCGCTAGGAGCAGGCATTGCCTTCTGCACCCTATTTGGCCTCTCGTTGATTATCCATACAATCCAGTTCATA TGGAAGCGACAATGGTGGGCAAGTGTGTTTAGTGTGGGATGTTTGGTCGAAGTAATCGGCTGGGCCGGTCGTACC TGGTCAGCCAAATGTCCATACAACGGAACTGCCTTCCTAATGCAGATCTCCACCCTCATCATCGCCCCAACTTTC TTCACAGCAGGAATCTACGTCGTCCTAGGCCGCTTCATTCAAATCCTCGGCCGCGAATCCTCCTTCCTGAAGCCA AGCCTGTACCTATGGATCTTCTGCACCTGCGACGTAATCTCCCTCGTCGTCCAAGCCATCGGCGGCGGCATGGCC TCCGGAGAAGCCAATACGGTCGGCGGCGACACCGCAACTGGCACGCACATCATGGTCGCTGGAATTGTCTTCCAG CTCTTCTCGGTAACCATATTCGTCATTTGCGCGGTCGACTTCATCCGCCGCGTTATGCGCAAGAATCTGCTGCAG CCGGGGTCCGGCTCGATCCTTCCCCTGTTCGGGGCGATGGTACTTTCCATCATCTGTATCTATGTTCGGAGTATC TATCGTACGATCGAGTTGTCGGAGGGATGGGATGGTTATCTCATTTCTCACGAGTCGTACTTTATTGGGCTCGAT GGGGCTATGATGATTGTTTCGGTGGCTGTGTTTAATGTGCTGCATCCTGGATGGATGTTGAATAACGAGAAGGCT GATTCGTATAAAACCGAGCGCACTTCGGTTGATCAACCGGACAGGTACGGGGGGCCGCCGACTCACTGGTGA |
| Gene | >Pro_DTO377G3_2|g2719.t1 ATGGTCGACGTGCTAGAGCTGCAATACGGCTGTCCTGCCTATATCGAAGGCGTTGGCACCTCATATGGATATATC CCATCGCTAGGAGCAGGCATTGCCTTCTGCACCCTATTTGGCCTCTCGTTGATTATCCATACAATCCAGTTCATA TGGAAGCGACAATGGTGGGCAAGTGTGTTTAGTGTGGGATGTTTGGGTAAGGCCTATGACATTTGAAACCCTAAC TCCCCGCAATACTAACAACATCAACAGTCGAAGTAATCGGCTGGGCCGGTCGTACCTGGTCAGCCAAATGTCCAT ACAACGGAACTGCCTTCCTAATGCAGATCTCCACCCTCATCATCGGTAAGCTACCTTCTTGCCCTTGACTATCCA TGCCCACCCTAACATTCCACAGCCCCAACTTTCTTCACAGCAGGAATCTACGTCGTCCTAGGCCGCTTCATTCAA ATCCTCGGCCGCGAATCCTCCTTCCTGAAGCCAAGCCTGTACCTATGGATCTTCTGCACCTGCGACGTAATCTCC CTCGTCGTCCAAGCCATCGGCGGCGGCATGGCCTCCGGAGAAGCCAATACGGTCGGCGGCGACACCGCAACTGGC ACGCACATCATGGTCGCTGGAATTGTCTTCCAGCTCTTCTCGGTAACCATATTCGTCATTTGCGCGGTCGACTTC ATCCGCCGCGTTATGCGCAAGAATCTGCTGCAGCCGGGGTCCGGCTCGATCCTTCCCCTGTTCGGGGCGATGGTA CTTTCCATCATCTGTATCTATGTTCGGAGTATCTATCGTACGATCGAGTTGTCGGAGGGATGGGATGGTTATCTC ATTTCTCACGAGTCGTACTTTATTGGGCTCGATGGGGCTATGATGATTGTTTCGGTGGCTGTGTTTAATGTGCTG CATCCTGGATGGATGTTGAATAACGAGAAGGCTGATTCGTATAAAACCGAGCGCACTTCGGTTGATCAACCGGAC AGGTACGGGGGGCCGCCGACTCACTGGTGA |