© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2714.t1 |
| Gene name | |
| Location | scaffold_03:754297..755338 |
| Strand | - |
| Gene length (bp) | 1041 |
| Transcript length (bp) | 786 |
| Coding sequence length (bp) | 786 |
| Protein length (aa) | 262 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00071 | Ras | Ras family | 1.3E-56 | 17 | 215 |
| PF08477 | Roc | Ras of Complex, Roc, domain of DAPkinase | 3.7E-34 | 17 | 131 |
| PF00025 | Arf | ADP-ribosylation factor family | 5.4E-14 | 12 | 135 |
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 1.2E-04 | 18 | 116 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0003924 | GTPase activity | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0043167 | ion binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:1901265 | nucleoside phosphate binding | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 282.65 | 172.62 | 392.69 |
| 5d_25C | Five days - 25 degrees Celsius | 355.62 | 214.94 | 496.31 |
| 7d_25C | Seven days - 25 degrees Celsius | 406.02 | 241.53 | 570.52 |
| 10d_25C | Ten days - 25 degrees Celsius | 580.54 | 341.62 | 819.46 |
| 7d_15C | Seven days - 15 degrees Celsius | 362.89 | 217.58 | 508.20 |
| 7d_30C | Seven days - 30 degrees Celsius | 365.18 | 215.70 | 514.66 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.342120 | no |
| 3d_25C | 7d_25C | 0.099736 | no |
| 3d_25C | 7d_15C | 0.289356 | no |
| 3d_25C | 7d_30C | 0.278124 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.637510 | no |
| 5d_25C | 7d_15C | 0.953512 | no |
| 5d_25C | 7d_30C | 0.939393 | no |
| 5d_25C | 10d_25C | 0.020660 | yes |
| 7d_25C | 7d_15C | 0.696129 | no |
| 7d_25C | 7d_30C | 0.720275 | no |
| 7d_25C | 10d_25C | 0.116817 | no |
| 7d_15C | 7d_30C | 0.986167 | no |
| 7d_15C | 10d_25C | 0.026584 | yes |
| 7d_30C | 10d_25C | 0.030434 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 5738 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2714.t1 MSESANANAPKPSSSVKLVLLGEAAVGKSSLVLRFVNNDFQENKEPTIGAAFLTQKCSLPTRTIKFEIWDTAGQE RFASLAPMYYRNAQAALVVYDVTKPSSLTKAKHWVAELQRQASPGIVIALVGNKLDLTNDGGDVSEAVGATQSEP ESAQGGDEGAGEEDEGQDVVSGDARKVSTRDATAYAEDEGLLFFETSAKTGTNVVEVFTAIANAIPESSLKTGRG TGAGTGQTSLGNRSAEDSRVNLGDRNAATAKEGCAC* |
| Coding | >Pro_DTO377G3_2|g2714.t1 ATGTCCGAATCAGCGAACGCAAATGCCCCGAAGCCGAGCAGCAGCGTCAAGCTTGTGCTGCTCGGAGAGGCCGCA GTGGGCAAGTCATCGCTTGTCCTCCGCTTTGTCAACAATGATTTCCAGGAGAATAAGGAACCAACTATTGGCGCT GCTTTTTTGACGCAAAAATGCTCCCTTCCTACGCGCACGATCAAGTTCGAGATCTGGGACACCGCCGGCCAAGAG CGATTCGCTTCGCTCGCCCCGATGTACTACCGCAACGCACAGGCGGCGCTTGTTGTCTACGACGTCACGAAACCC TCTTCGCTGACAAAAGCCAAGCACTGGGTCGCCGAGCTGCAGCGCCAAGCGAGCCCTGGAATCGTCATTGCCCTC GTCGGTAACAAGCTGGACTTGACCAATGACGGCGGAGATGTTTCCGAGGCCGTTGGCGCTACACAGAGCGAGCCT GAGTCGGCCCAAGGTGGAGATGAAGGTGCCGGTGAGGAAGACGAGGGGCAGGATGTCGTGTCCGGCGATGCTCGC AAGGTATCGACACGAGACGCTACCGCCTATGCGGAGGATGAGGGTCTTCTGTTCTTCGAGACTAGCGCCAAGACC GGAACCAATGTTGTGGAAGTCTTCACGGCAATTGCAAATGCCATCCCCGAGAGCAGTCTGAAGACTGGTCGCGGT ACCGGTGCCGGAACTGGTCAGACTTCGTTGGGTAATCGGTCAGCAGAAGACTCACGGGTCAACCTGGGTGATCGA AATGCTGCTACGGCTAAGGAAGGCTGCGCTTGCTGA |
| Transcript | >Pro_DTO377G3_2|g2714.t1 ATGTCCGAATCAGCGAACGCAAATGCCCCGAAGCCGAGCAGCAGCGTCAAGCTTGTGCTGCTCGGAGAGGCCGCA GTGGGCAAGTCATCGCTTGTCCTCCGCTTTGTCAACAATGATTTCCAGGAGAATAAGGAACCAACTATTGGCGCT GCTTTTTTGACGCAAAAATGCTCCCTTCCTACGCGCACGATCAAGTTCGAGATCTGGGACACCGCCGGCCAAGAG CGATTCGCTTCGCTCGCCCCGATGTACTACCGCAACGCACAGGCGGCGCTTGTTGTCTACGACGTCACGAAACCC TCTTCGCTGACAAAAGCCAAGCACTGGGTCGCCGAGCTGCAGCGCCAAGCGAGCCCTGGAATCGTCATTGCCCTC GTCGGTAACAAGCTGGACTTGACCAATGACGGCGGAGATGTTTCCGAGGCCGTTGGCGCTACACAGAGCGAGCCT GAGTCGGCCCAAGGTGGAGATGAAGGTGCCGGTGAGGAAGACGAGGGGCAGGATGTCGTGTCCGGCGATGCTCGC AAGGTATCGACACGAGACGCTACCGCCTATGCGGAGGATGAGGGTCTTCTGTTCTTCGAGACTAGCGCCAAGACC GGAACCAATGTTGTGGAAGTCTTCACGGCAATTGCAAATGCCATCCCCGAGAGCAGTCTGAAGACTGGTCGCGGT ACCGGTGCCGGAACTGGTCAGACTTCGTTGGGTAATCGGTCAGCAGAAGACTCACGGGTCAACCTGGGTGATCGA AATGCTGCTACGGCTAAGGAAGGCTGCGCTTGCTGA |
| Gene | >Pro_DTO377G3_2|g2714.t1 ATGTCCGAATCAGCGAACGCAAATGCCCCGAAGCCGAGCAGCAGCGTCAAGCTTGTGCTGCTCGGAGAGGCCGCA GTGGGCAAGGTACTGCTCTATTCGTCATGTTACATGATTTTGACAGCTAACCGTCTCTTGTTATTCGCCCATAGT CATCGCTTGTCCTCCGCTTTGTCAACAATGATTTCCAGGAGAATAAGGAACCAACTATTGGCGGTAAGATTTCCC CATGGACTTAGCCCCCCCCCACAGGATACAAGGTACTGTTCCTGGCAGATCATAAACTTTTTGGAGAATCCAGGG ACGGTGTGTTGTATCCAAAATTGAGTTGTTCCCCGCAAACGGGGCAACCCGGCCCCTTAATAATACTTTGCACTA GAATAACCATCTAACGTCGTCTTTCCAGCTGCTTTTTTGACGCAAAAATGCTCCCTTCCTACGCGCACGATCAAG TTCGAGATCTGGGACACCGCCGGCCAAGAGCGATTCGCTTCGCTCGCCCCGATGTACTACCGCAACGCACAGGCG GCGCTTGTTGTCTACGACGTCACGAAACCCTCTTCGCTGACAAAAGCCAAGCACTGGGTCGCCGAGCTGCAGCGC CAAGCGAGCCCTGGAATCGTCATTGCCCTCGTCGGTAACAAGCTGGACTTGACCAATGACGGCGGAGATGTTTCC GAGGCCGTTGGCGCTACACAGAGCGAGCCTGAGTCGGCCCAAGGTGGAGATGAAGGTGCCGGTGAGGAAGACGAG GGGCAGGATGTCGTGTCCGGCGATGCTCGCAAGGTATCGACACGAGACGCTACCGCCTATGCGGAGGATGAGGGT CTTCTGTTCTTCGAGACTAGCGCCAAGACCGGAACCAATGTTGTGGAAGTCTTCACGGCAATTGCAAATGCCATC CCCGAGAGCAGTCTGAAGACTGGTCGCGGTACCGGTGCCGGAACTGGTCAGACTTCGTTGGGTAATCGGTCAGCA GAAGACTCACGGGTCAACCTGGGTGATCGAAATGCTGCTACGGCTAAGGAAGGCTGCGCTTGCTGA |