© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2707.t1 |
| Gene name | |
| Location | scaffold_03:736025..737151 |
| Strand | + |
| Gene length (bp) | 1126 |
| Transcript length (bp) | 735 |
| Coding sequence length (bp) | 735 |
| Protein length (aa) | 245 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03271 | EB1 | EB1-like C-terminal motif | 1.5E-16 | 177 | 222 |
| PF00307 | CH | Calponin homology (CH) domain | 1.4E-06 | 3 | 100 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0008017 | microtubule binding | Yes |
| GO:0008092 | cytoskeletal protein binding | No |
| GO:0005488 | binding | No |
| GO:0015631 | tubulin binding | No |
| GO:0003674 | molecular_function | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 41.94 | 20.15 | 63.73 |
| 5d_25C | Five days - 25 degrees Celsius | 38.69 | 17.56 | 59.82 |
| 7d_25C | Seven days - 25 degrees Celsius | 34.44 | 14.87 | 54.02 |
| 10d_25C | Ten days - 25 degrees Celsius | 21.01 | 7.60 | 34.43 |
| 7d_15C | Seven days - 15 degrees Celsius | 37.81 | 14.94 | 60.68 |
| 7d_30C | Seven days - 30 degrees Celsius | 44.72 | 21.39 | 68.04 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.849102 | no |
| 3d_25C | 7d_25C | 0.602349 | no |
| 3d_25C | 7d_15C | 0.812871 | no |
| 3d_25C | 7d_30C | 0.882171 | no |
| 3d_25C | 10d_25C | 0.027278 | yes |
| 5d_25C | 7d_25C | 0.786018 | no |
| 5d_25C | 7d_15C | 0.964855 | no |
| 5d_25C | 7d_30C | 0.704582 | no |
| 5d_25C | 10d_25C | 0.058289 | no |
| 7d_25C | 7d_15C | 0.845299 | no |
| 7d_25C | 7d_30C | 0.461015 | no |
| 7d_25C | 10d_25C | 0.151518 | no |
| 7d_15C | 7d_30C | 0.676488 | no |
| 7d_15C | 10d_25C | 0.082459 | no |
| 7d_30C | 10d_25C | 0.018034 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 5745 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2707.t1 MGESRQELLAWLNNLLQLNLTKIEQCGTGAALCQVFDSIFMDVPMSRVKFNVNTEYAYLQNFKILQNVFARHQVN KPIPVQSLTKCRMQDNLEFLQWVKKYWDQHYPGGEYDSVGRRKASGAVGAAPASRAPSASSARRGVTPTTGAVRP RVAAPSGAATAALQQEISTQKEAIAGLEKERDFYFAKLRDIELLLQSAIEADPELEKEEDTLVKHIQGILYSTED GFEIPAEGEEIPADELETF* |
| Coding | >Pro_DTO377G3_2|g2707.t1 ATGGGTGAATCCAGACAGGAACTGCTCGCATGGCTTAATAACCTGCTGCAGCTGAACCTTACCAAGATTGAGCAA TGTGGAACTGGTGCTGCCCTCTGCCAGGTCTTCGATTCGATTTTCATGGATGTTCCCATGTCCCGGGTCAAATTC AACGTGAACACTGAATATGCCTACCTTCAGAATTTCAAGATTCTTCAGAACGTCTTCGCCCGACACCAGGTCAAC AAGCCCATTCCCGTTCAGTCCCTCACGAAGTGCCGCATGCAGGACAACCTGGAGTTCCTCCAGTGGGTTAAGAAA TACTGGGACCAGCACTATCCCGGTGGTGAATACGACTCCGTCGGCCGGCGTAAGGCTTCCGGCGCCGTTGGTGCC GCCCCCGCTTCGCGCGCCCCGTCTGCAAGCAGCGCACGCCGTGGGGTGACCCCAACAACGGGCGCCGTCCGTCCC CGAGTGGCCGCGCCCAGTGGAGCGGCCACCGCTGCCCTGCAACAGGAGATCTCCACACAGAAGGAAGCGATCGCA GGACTAGAGAAGGAGCGCGACTTCTACTTCGCCAAGCTACGCGATATTGAGCTGCTGCTCCAGAGCGCCATTGAA GCCGACCCGGAGCTTGAAAAGGAAGAAGACACGCTTGTTAAGCACATCCAGGGCATTCTATACTCGACCGAGGAC GGTTTCGAGATCCCTGCCGAAGGAGAGGAGATTCCAGCCGACGAGCTCGAGACTTTCTAA |
| Transcript | >Pro_DTO377G3_2|g2707.t1 ATGGGTGAATCCAGACAGGAACTGCTCGCATGGCTTAATAACCTGCTGCAGCTGAACCTTACCAAGATTGAGCAA TGTGGAACTGGTGCTGCCCTCTGCCAGGTCTTCGATTCGATTTTCATGGATGTTCCCATGTCCCGGGTCAAATTC AACGTGAACACTGAATATGCCTACCTTCAGAATTTCAAGATTCTTCAGAACGTCTTCGCCCGACACCAGGTCAAC AAGCCCATTCCCGTTCAGTCCCTCACGAAGTGCCGCATGCAGGACAACCTGGAGTTCCTCCAGTGGGTTAAGAAA TACTGGGACCAGCACTATCCCGGTGGTGAATACGACTCCGTCGGCCGGCGTAAGGCTTCCGGCGCCGTTGGTGCC GCCCCCGCTTCGCGCGCCCCGTCTGCAAGCAGCGCACGCCGTGGGGTGACCCCAACAACGGGCGCCGTCCGTCCC CGAGTGGCCGCGCCCAGTGGAGCGGCCACCGCTGCCCTGCAACAGGAGATCTCCACACAGAAGGAAGCGATCGCA GGACTAGAGAAGGAGCGCGACTTCTACTTCGCCAAGCTACGCGATATTGAGCTGCTGCTCCAGAGCGCCATTGAA GCCGACCCGGAGCTTGAAAAGGAAGAAGACACGCTTGTTAAGCACATCCAGGGCATTCTATACTCGACCGAGGAC GGTTTCGAGATCCCTGCCGAAGGAGAGGAGATTCCAGCCGACGAGCTCGAGACTTTCTAA |
| Gene | >Pro_DTO377G3_2|g2707.t1 ATGGGTGAATCCAGGTTCGACTTTTCTCCTATTCCCCGCCATCTCGCGACCGATATGGCCTTACTGACGCCGATC GCTTTATGATTCAGACAGGAACTGCTCGCATGGCTTAATAACCTGCTGCAGCTGAACCTTACCAAGATTGAGCAA TGTGGAACTGGGTATGGTTTGATCGAGATTCTCCCCGACTTTCAAAAGGCCCGCGGGGCGATCTCTTTTGTATGG ATCAGCTGGGCTGACCTCCTATCTTCCTCTATAGTGCTGCCCTCTGCCAGGTCTTCGATTCGATTTTCAGTATGT AATCAATACGACCGGCGCAATAGTCGAGAGAAACGGGCCCGTACTGAGTTGCGGGATACATACTGACTGGTTTCT CTCTTTGTTCAGTGGATGTTCCCATGTCCCGGGTCAAATTCAACGTGAACACTGAATATGCCTACCTTCAGAATT TCAAGATTCTTCAGAGTATGTGAAGGCGGATTCCAAATCGGCCAACGATCCCCCTTTTAACATATCCAATCATCC AGACGTCTTCGCCCGACACCAGGTCAACAAGCCCATTCCCGTTCAGTCCCTCACGAAGTGCCGCATGCAGGACAA CCTGGAGTTCCTCCAGTGGGTTAAGAAATACTGGGACCAGCACTATCCCGGTGGTGAATACGACTCCGTCGGCCG GCGTAAGGCTTCCGGCGCCGTTGGTGCCGCCCCCGCTTCGCGCGCCCCGTCTGCAAGCAGCGCACGCCGTGGGGT GACCCCAACAACGGGCGCCGTCCGTCCCCGAGTGGCCGCGCCCAGTGGAGCGGCCACCGCTGCCCTGCAACAGGA GATCTCCACACAGAAGGAAGCGATCGCAGGACTAGAGAAGGAGCGCGACTTCTACTTCGCCAAGCTACGCGATAT TGAGCTGCTGCTCCAGAGCGCCATTGAAGCCGACCCGGAGCTTGAAAAGGAAGAAGACACGCTTGTTAAGCACAT CCAGGGCATTCTATACTCGACCGAGGTCCGTTCCCTTGACCTATTCCCTGAGGATTCCCCCAACTGACGCCTGTG CGCCCCCCATTAGGACGGTTTCGAGATCCCTGCCGAAGGAGAGGAGATTCCAGCCGACGAGCTCGAGACTTTCTA A |