© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2707.t1 |
| Gene name | |
| Location | scaffold_03:736025..737151 |
| Strand | + |
| Gene length (bp) | 1126 |
| Transcript length (bp) | 735 |
| Coding sequence length (bp) | 735 |
| Protein length (aa) | 245 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03271 | EB1 | EB1-like C-terminal motif | 1.5E-16 | 177 | 222 |
| PF00307 | CH | Calponin homology (CH) domain | 1.4E-06 | 3 | 100 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0008017 | microtubule binding | Yes |
| GO:0008092 | cytoskeletal protein binding | No |
| GO:0005488 | binding | No |
| GO:0015631 | tubulin binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2707.t1 MGESRQELLAWLNNLLQLNLTKIEQCGTGAALCQVFDSIFMDVPMSRVKFNVNTEYAYLQNFKILQNVFARHQVN KPIPVQSLTKCRMQDNLEFLQWVKKYWDQHYPGGEYDSVGRRKASGAVGAAPASRAPSASSARRGVTPTTGAVRP RVAAPSGAATAALQQEISTQKEAIAGLEKERDFYFAKLRDIELLLQSAIEADPELEKEEDTLVKHIQGILYSTED GFEIPAEGEEIPADELETF* |
| Coding | >Pro_DTO377G3_2|g2707.t1 ATGGGTGAATCCAGACAGGAACTGCTCGCATGGCTTAATAACCTGCTGCAGCTGAACCTTACCAAGATTGAGCAA TGTGGAACTGGTGCTGCCCTCTGCCAGGTCTTCGATTCGATTTTCATGGATGTTCCCATGTCCCGGGTCAAATTC AACGTGAACACTGAATATGCCTACCTTCAGAATTTCAAGATTCTTCAGAACGTCTTCGCCCGACACCAGGTCAAC AAGCCCATTCCCGTTCAGTCCCTCACGAAGTGCCGCATGCAGGACAACCTGGAGTTCCTCCAGTGGGTTAAGAAA TACTGGGACCAGCACTATCCCGGTGGTGAATACGACTCCGTCGGCCGGCGTAAGGCTTCCGGCGCCGTTGGTGCC GCCCCCGCTTCGCGCGCCCCGTCTGCAAGCAGCGCACGCCGTGGGGTGACCCCAACAACGGGCGCCGTCCGTCCC CGAGTGGCCGCGCCCAGTGGAGCGGCCACCGCTGCCCTGCAACAGGAGATCTCCACACAGAAGGAAGCGATCGCA GGACTAGAGAAGGAGCGCGACTTCTACTTCGCCAAGCTACGCGATATTGAGCTGCTGCTCCAGAGCGCCATTGAA GCCGACCCGGAGCTTGAAAAGGAAGAAGACACGCTTGTTAAGCACATCCAGGGCATTCTATACTCGACCGAGGAC GGTTTCGAGATCCCTGCCGAAGGAGAGGAGATTCCAGCCGACGAGCTCGAGACTTTCTAA |
| Transcript | >Pro_DTO377G3_2|g2707.t1 ATGGGTGAATCCAGACAGGAACTGCTCGCATGGCTTAATAACCTGCTGCAGCTGAACCTTACCAAGATTGAGCAA TGTGGAACTGGTGCTGCCCTCTGCCAGGTCTTCGATTCGATTTTCATGGATGTTCCCATGTCCCGGGTCAAATTC AACGTGAACACTGAATATGCCTACCTTCAGAATTTCAAGATTCTTCAGAACGTCTTCGCCCGACACCAGGTCAAC AAGCCCATTCCCGTTCAGTCCCTCACGAAGTGCCGCATGCAGGACAACCTGGAGTTCCTCCAGTGGGTTAAGAAA TACTGGGACCAGCACTATCCCGGTGGTGAATACGACTCCGTCGGCCGGCGTAAGGCTTCCGGCGCCGTTGGTGCC GCCCCCGCTTCGCGCGCCCCGTCTGCAAGCAGCGCACGCCGTGGGGTGACCCCAACAACGGGCGCCGTCCGTCCC CGAGTGGCCGCGCCCAGTGGAGCGGCCACCGCTGCCCTGCAACAGGAGATCTCCACACAGAAGGAAGCGATCGCA GGACTAGAGAAGGAGCGCGACTTCTACTTCGCCAAGCTACGCGATATTGAGCTGCTGCTCCAGAGCGCCATTGAA GCCGACCCGGAGCTTGAAAAGGAAGAAGACACGCTTGTTAAGCACATCCAGGGCATTCTATACTCGACCGAGGAC GGTTTCGAGATCCCTGCCGAAGGAGAGGAGATTCCAGCCGACGAGCTCGAGACTTTCTAA |
| Gene | >Pro_DTO377G3_2|g2707.t1 ATGGGTGAATCCAGGTTCGACTTTTCTCCTATTCCCCGCCATCTCGCGACCGATATGGCCTTACTGACGCCGATC GCTTTATGATTCAGACAGGAACTGCTCGCATGGCTTAATAACCTGCTGCAGCTGAACCTTACCAAGATTGAGCAA TGTGGAACTGGGTATGGTTTGATCGAGATTCTCCCCGACTTTCAAAAGGCCCGCGGGGCGATCTCTTTTGTATGG ATCAGCTGGGCTGACCTCCTATCTTCCTCTATAGTGCTGCCCTCTGCCAGGTCTTCGATTCGATTTTCAGTATGT AATCAATACGACCGGCGCAATAGTCGAGAGAAACGGGCCCGTACTGAGTTGCGGGATACATACTGACTGGTTTCT CTCTTTGTTCAGTGGATGTTCCCATGTCCCGGGTCAAATTCAACGTGAACACTGAATATGCCTACCTTCAGAATT TCAAGATTCTTCAGAGTATGTGAAGGCGGATTCCAAATCGGCCAACGATCCCCCTTTTAACATATCCAATCATCC AGACGTCTTCGCCCGACACCAGGTCAACAAGCCCATTCCCGTTCAGTCCCTCACGAAGTGCCGCATGCAGGACAA CCTGGAGTTCCTCCAGTGGGTTAAGAAATACTGGGACCAGCACTATCCCGGTGGTGAATACGACTCCGTCGGCCG GCGTAAGGCTTCCGGCGCCGTTGGTGCCGCCCCCGCTTCGCGCGCCCCGTCTGCAAGCAGCGCACGCCGTGGGGT GACCCCAACAACGGGCGCCGTCCGTCCCCGAGTGGCCGCGCCCAGTGGAGCGGCCACCGCTGCCCTGCAACAGGA GATCTCCACACAGAAGGAAGCGATCGCAGGACTAGAGAAGGAGCGCGACTTCTACTTCGCCAAGCTACGCGATAT TGAGCTGCTGCTCCAGAGCGCCATTGAAGCCGACCCGGAGCTTGAAAAGGAAGAAGACACGCTTGTTAAGCACAT CCAGGGCATTCTATACTCGACCGAGGTCCGTTCCCTTGACCTATTCCCTGAGGATTCCCCCAACTGACGCCTGTG CGCCCCCCATTAGGACGGTTTCGAGATCCCTGCCGAAGGAGAGGAGATTCCAGCCGACGAGCTCGAGACTTTCTA A |