© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2697.t1 |
| Gene name | |
| Location | scaffold_03:714163..716468 |
| Strand | + |
| Gene length (bp) | 2305 |
| Transcript length (bp) | 2163 |
| Coding sequence length (bp) | 2163 |
| Protein length (aa) | 721 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00250 | Forkhead | Forkhead domain | 1.6E-35 | 335 | 418 |
| PF00498 | FHA | FHA domain | 1.3E-07 | 152 | 213 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0003700 | DNA-binding transcription factor activity | Yes |
| GO:0043565 | sequence-specific DNA binding | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0003677 | DNA binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0050789 | regulation of biological process | No |
| GO:0005488 | binding | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0065007 | biological regulation | No |
| GO:0003674 | molecular_function | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050794 | regulation of cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Forkhead |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 132.89 | 80.26 | 185.52 |
| 5d_25C | Five days - 25 degrees Celsius | 65.04 | 39.02 | 91.05 |
| 7d_25C | Seven days - 25 degrees Celsius | 89.53 | 52.24 | 126.82 |
| 10d_25C | Ten days - 25 degrees Celsius | 47.49 | 28.73 | 66.25 |
| 7d_15C | Seven days - 15 degrees Celsius | 97.49 | 56.98 | 138.00 |
| 7d_30C | Seven days - 30 degrees Celsius | 26.27 | 15.27 | 37.26 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.076864 | no |
| 3d_25C | 7d_15C | 0.183143 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.169389 | no |
| 5d_25C | 7d_15C | 0.074572 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.164253 | no |
| 7d_25C | 7d_15C | 0.788682 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.002297 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.002761 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2697.t1 MPLTNRRRARRKEIQLQETSDAEAPDSSPSRPSAKKRKVDRRTSPPRNVKHESADEAEDSTGEHEPATNQDLVDL VISYLNTPREELRVSRDHSNTKTENTQRIQAYAKIAGRNWTYYVKTLHVNIGREPDREQRAVEQSSPVTIAARAL PDVHVDLGPSKFVSRLHAEIFYDGEETPAWHIRVNGRNGVRLNNAIVKRGTDAILSCGDIIEVANTQMMFVTPGD EANIQPSFIERAQRIASGQEPDPASVAWDASQHAHPQHSQNSEATRPSSSGGPSLAPAPKFNKRQVTPPPRSPDT AGQRTAKQSPLYNRGMMMESTEEIDYSKDSSKDLKPPYSYATLIAQAIFSSEEEKLTLNSIYNWIMDKYAFYRHS QSGWQNSIRHNLSLNKAFQKVPRRTDEPGKGMKWQIAVEYREEYRKKQTRKGGTQSSAPSSPATKEPPSSARGTH VSKIDTSFSATARKSPPVSSPGFSSFPVAPVEAYTPERGSRLGRGLGSDHPLRHMNPRDYDEPSPLPSRSHNHHS SISTQVQNSSNNLARAYGMSDNVAGSPPVLSSSYYNEEPSSMITPAPQRQQPRLPPPSTAQIPSKFMPMSSPAQF WKFADIGSTPARPPPDMSPLKGEVEDRIIGGFPSSSPPPPNLVSPSKPGTSNGLGSGRTLPPLQSDSGDMGPNGT SHARNEEREEEDDDDNGSGFDLARGFEPIGSYHRQLGNAARAAAT* |
| Coding | >Pro_DTO377G3_2|g2697.t1 ATGCCGCTTACGAACCGCCGCCGCGCGCGCCGCAAGGAAATTCAACTGCAAGAAACCTCCGACGCAGAGGCTCCG GACTCATCACCCAGCCGGCCATCCGCGAAGAAGCGCAAGGTTGACCGCCGTACCTCCCCTCCTCGAAACGTCAAA CATGAGTCCGCCGACGAAGCCGAGGACTCAACGGGCGAACACGAACCCGCTACCAATCAAGACCTCGTCGATCTA GTGATTTCATATCTGAACACCCCCCGCGAGGAACTGCGCGTCTCGCGCGACCACTCCAACACCAAGACCGAGAAT ACACAGCGCATCCAGGCGTATGCTAAGATTGCCGGCCGCAATTGGACGTATTACGTCAAAACACTGCATGTCAAT ATCGGCCGTGAACCGGACCGCGAACAGCGGGCTGTGGAACAGTCTAGCCCCGTCACAATAGCGGCTCGTGCGCTG CCAGATGTTCATGTCGACTTGGGCCCTAGCAAATTCGTGTCGAGACTGCATGCTGAGATCTTTTATGATGGCGAG GAAACCCCTGCCTGGCACATCCGGGTCAATGGCCGGAATGGTGTGCGCTTGAACAATGCAATTGTGAAGCGCGGC ACCGATGCGATTCTCTCATGTGGCGACATCATCGAGGTGGCCAATACACAAATGATGTTTGTCACGCCCGGCGAC GAGGCCAATATCCAGCCCAGCTTTATCGAGCGTGCGCAGCGCATTGCGAGCGGACAGGAGCCGGATCCGGCTTCG GTTGCCTGGGATGCTTCGCAGCATGCCCATCCTCAGCATTCCCAGAACAGCGAGGCTACACGACCATCTTCGTCC GGCGGGCCCTCGTTGGCGCCTGCTCCGAAGTTCAACAAGCGCCAGGTGACGCCCCCACCGCGATCGCCCGATACC GCCGGCCAGCGCACGGCTAAGCAGTCCCCGCTTTACAACCGAGGCATGATGATGGAGAGCACGGAGGAAATCGAT TACAGCAAGGATTCCTCCAAGGACCTGAAGCCGCCGTACAGCTATGCGACTCTAATCGCTCAGGCTATTTTCTCG AGTGAGGAGGAGAAGCTCACGTTGAACAGTATCTACAATTGGATTATGGATAAATACGCGTTCTATCGACACTCC CAAAGCGGCTGGCAAAACTCCATCCGCCACAATCTCTCGCTAAACAAGGCGTTCCAAAAGGTTCCCCGCCGGACC GACGAGCCGGGCAAGGGTATGAAGTGGCAGATCGCAGTAGAGTATCGGGAGGAGTACCGGAAGAAGCAAACACGC AAGGGCGGCACGCAGTCATCTGCCCCGTCCTCGCCGGCGACGAAAGAGCCCCCGTCATCAGCACGCGGGACTCAC GTTAGCAAAATCGACACCTCGTTCTCAGCAACAGCGAGAAAGTCGCCACCCGTTTCGTCCCCGGGCTTCAGCTCG TTTCCCGTAGCCCCGGTGGAAGCATACACACCAGAGCGTGGTTCCCGGCTCGGTCGAGGGCTCGGCTCCGACCAC CCACTGCGACATATGAACCCACGCGACTACGATGAACCCTCGCCGCTCCCGTCGCGCTCACACAATCACCACTCC AGCATCTCCACGCAGGTTCAAAATAGCAGCAACAACCTGGCCCGCGCGTACGGCATGTCCGACAACGTAGCCGGG TCCCCGCCAGTCCTCTCCTCATCCTACTACAACGAAGAGCCCTCTTCGATGATTACTCCCGCCCCGCAACGGCAA CAGCCCCGTCTCCCGCCCCCCAGTACCGCGCAGATCCCGTCGAAGTTCATGCCCATGAGCTCGCCCGCGCAGTTC TGGAAGTTCGCTGATATCGGGAGTACCCCTGCCCGTCCGCCGCCGGACATGAGTCCCCTGAAGGGTGAGGTCGAG GACCGCATTATCGGCGGGTTCCCGAGTAGCTCTCCCCCGCCGCCGAATCTCGTTAGTCCTAGTAAACCCGGGACG TCGAATGGACTTGGCTCCGGTCGGACTCTGCCCCCGCTCCAGTCAGATTCGGGGGATATGGGACCCAACGGGACG TCTCATGCGAGGAATGAAGAGCGAGAAGAGGAGGATGATGATGATAATGGATCGGGGTTTGATCTTGCTAGAGGT TTCGAACCTATCGGCTCATACCATCGACAACTAGGCAATGCTGCCCGTGCGGCTGCTACGTGA |
| Transcript | >Pro_DTO377G3_2|g2697.t1 ATGCCGCTTACGAACCGCCGCCGCGCGCGCCGCAAGGAAATTCAACTGCAAGAAACCTCCGACGCAGAGGCTCCG GACTCATCACCCAGCCGGCCATCCGCGAAGAAGCGCAAGGTTGACCGCCGTACCTCCCCTCCTCGAAACGTCAAA CATGAGTCCGCCGACGAAGCCGAGGACTCAACGGGCGAACACGAACCCGCTACCAATCAAGACCTCGTCGATCTA GTGATTTCATATCTGAACACCCCCCGCGAGGAACTGCGCGTCTCGCGCGACCACTCCAACACCAAGACCGAGAAT ACACAGCGCATCCAGGCGTATGCTAAGATTGCCGGCCGCAATTGGACGTATTACGTCAAAACACTGCATGTCAAT ATCGGCCGTGAACCGGACCGCGAACAGCGGGCTGTGGAACAGTCTAGCCCCGTCACAATAGCGGCTCGTGCGCTG CCAGATGTTCATGTCGACTTGGGCCCTAGCAAATTCGTGTCGAGACTGCATGCTGAGATCTTTTATGATGGCGAG GAAACCCCTGCCTGGCACATCCGGGTCAATGGCCGGAATGGTGTGCGCTTGAACAATGCAATTGTGAAGCGCGGC ACCGATGCGATTCTCTCATGTGGCGACATCATCGAGGTGGCCAATACACAAATGATGTTTGTCACGCCCGGCGAC GAGGCCAATATCCAGCCCAGCTTTATCGAGCGTGCGCAGCGCATTGCGAGCGGACAGGAGCCGGATCCGGCTTCG GTTGCCTGGGATGCTTCGCAGCATGCCCATCCTCAGCATTCCCAGAACAGCGAGGCTACACGACCATCTTCGTCC GGCGGGCCCTCGTTGGCGCCTGCTCCGAAGTTCAACAAGCGCCAGGTGACGCCCCCACCGCGATCGCCCGATACC GCCGGCCAGCGCACGGCTAAGCAGTCCCCGCTTTACAACCGAGGCATGATGATGGAGAGCACGGAGGAAATCGAT TACAGCAAGGATTCCTCCAAGGACCTGAAGCCGCCGTACAGCTATGCGACTCTAATCGCTCAGGCTATTTTCTCG AGTGAGGAGGAGAAGCTCACGTTGAACAGTATCTACAATTGGATTATGGATAAATACGCGTTCTATCGACACTCC CAAAGCGGCTGGCAAAACTCCATCCGCCACAATCTCTCGCTAAACAAGGCGTTCCAAAAGGTTCCCCGCCGGACC GACGAGCCGGGCAAGGGTATGAAGTGGCAGATCGCAGTAGAGTATCGGGAGGAGTACCGGAAGAAGCAAACACGC AAGGGCGGCACGCAGTCATCTGCCCCGTCCTCGCCGGCGACGAAAGAGCCCCCGTCATCAGCACGCGGGACTCAC GTTAGCAAAATCGACACCTCGTTCTCAGCAACAGCGAGAAAGTCGCCACCCGTTTCGTCCCCGGGCTTCAGCTCG TTTCCCGTAGCCCCGGTGGAAGCATACACACCAGAGCGTGGTTCCCGGCTCGGTCGAGGGCTCGGCTCCGACCAC CCACTGCGACATATGAACCCACGCGACTACGATGAACCCTCGCCGCTCCCGTCGCGCTCACACAATCACCACTCC AGCATCTCCACGCAGGTTCAAAATAGCAGCAACAACCTGGCCCGCGCGTACGGCATGTCCGACAACGTAGCCGGG TCCCCGCCAGTCCTCTCCTCATCCTACTACAACGAAGAGCCCTCTTCGATGATTACTCCCGCCCCGCAACGGCAA CAGCCCCGTCTCCCGCCCCCCAGTACCGCGCAGATCCCGTCGAAGTTCATGCCCATGAGCTCGCCCGCGCAGTTC TGGAAGTTCGCTGATATCGGGAGTACCCCTGCCCGTCCGCCGCCGGACATGAGTCCCCTGAAGGGTGAGGTCGAG GACCGCATTATCGGCGGGTTCCCGAGTAGCTCTCCCCCGCCGCCGAATCTCGTTAGTCCTAGTAAACCCGGGACG TCGAATGGACTTGGCTCCGGTCGGACTCTGCCCCCGCTCCAGTCAGATTCGGGGGATATGGGACCCAACGGGACG TCTCATGCGAGGAATGAAGAGCGAGAAGAGGAGGATGATGATGATAATGGATCGGGGTTTGATCTTGCTAGAGGT TTCGAACCTATCGGCTCATACCATCGACAACTAGGCAATGCTGCCCGTGCGGCTGCTACGTGA |
| Gene | >Pro_DTO377G3_2|g2697.t1 ATGCCGCTTACGAACCGCCGCCGCGCGCGCCGCAAGGAAATTCAACTGCAAGAAACCTCCGACGCAGAGGCTCCG GACTCATCACCCAGCCGGCCATCCGCGAAGAAGCGCAAGGTGAGTTAGAACAACGGAGCGTTTAGTTTGAGACCA AATAGATCCTCGCGCAAACAGGAGCTAAGACTAGATTTCTTCTGATCCTCAGGTTGACCGCCGTACCTCCCCTCC TCGAAACGTCAAACATGAGTCCGCCGACGAAGCCGAGGACTCAACGGGCGAACACGAACCCGCTACCAATCAAGA CCTCGTCGATCTAGTGATTTCATATCTGAACACCCCCCGCGAGGAACTGCGCGTCTCGCGCGACCACTCCAACAC CAAGACCGAGAATACACAGCGCATCCAGGCGTATGCTAAGATTGCCGGCCGCAATTGGACGTATTACGTCAAAAC ACTGCATGTCAATATCGGCCGTGAACCGGACCGCGAACAGCGGGCTGTGGAACAGTCTAGCCCCGTCACAATAGC GGCTCGTGCGCTGCCAGATGTTCATGTCGACTTGGGCCCTAGCAAATTCGTGTCGAGACTGCATGCTGAGATCTT TTATGATGGCGAGGAAACCCCTGCCTGGCACATCCGGGTCAATGGCCGGAATGGTGTGCGCTTGAACAATGCAAT TGTGAAGCGCGGCACCGATGCGATTCTCTCATGTGGCGACATCATCGAGGTGGCCAATACACAAATGATGTTTGT CACGCCCGGCGACGAGGCCAATATCCAGCCCAGCTTTATCGAGCGTGCGCAGCGCATTGCGAGCGGACAGGAGCC GGATCCGGCTTCGGTTGCCTGGGATGCTTCGCAGCATGCCCATCCTCAGCATTCCCAGAACAGCGAGGCTACACG ACCATCTTCGTCCGGCGGGCCCTCGTTGGCGCCTGCTCCGAAGTTCAACAAGCGCCAGGTGACGCCCCCACCGCG ATCGCCCGATACCGCCGGCCAGCGCACGGCTAAGCAGTCCCCGCTTTACAACCGAGGCATGATGATGGAGAGCAC GGAGGAAATCGATTACAGCAAGGATTCCTCCAAGGACCTGAAGCCGCCGTACAGCTATGCGACTCTAATCGCTCA GGCTATTTTCTCGAGTGAGGAGGAGAAGCTCACGTTGAACAGTATCTACAATTGGATTATGGATAAATACGCGTT CTATCGACACTCCCAAAGCGGCTGGCAAAACTCCATCCGCCACAATCTCTCGCTAAACAAGGCGTTCCAAAAGGT TCCCCGCCGGACCGACGAGCCGGGCAAGGGTATGAAGTGGCAGATCGCAGTAGAGTATCGGGAGGAGTACCGGAA GAAGCAAACACGCAAGGGCGGCACGCAGTCATCTGCCCCGTCCTCGCCGGCGACGAAAGAGCCCCCGTCATCAGC ACGCGGGACTCACGTTAGCAAAATCGACACCTCGTTCTCAGCAACAGCGAGAAAGTCGCCACCCGTTTCGTCCCC GGGCTTCAGCTCGTTTCCCGTAGCCCCGGTGGAAGCATACACACCAGAGCGTGGTTCCCGGCTCGGTCGAGGGCT CGGCTCCGACCACCCACTGCGACATATGAACCCACGCGACTACGATGAACCCTCGCCGCTCCCGTCGCGCTCACA CAATCACCACTCCAGCATCTCCACGCAGGTTCAAAATAGCAGCAACAACCTGGCCCGCGCGTACGGCATGTCCGA CAACGTAGCCGGGTCCCCGCCAGTCCTCTCCTCATCCTACTACAACGAAGAGCCCTCTTCGATGATTACTCCCGC CCCGCAACGGCAACAGCCCCGTCTCCCGCCCCCCAGTACCGCGCAGATCCCGTCGAAGTTCATGCCCATGAGCTC GCCCGCGCAGTTCTGGAAGTTCGCTGATATCGGGAGTACCCCTGCCCGTCCGCCGCCGGACATGAGTCCCCTGAA GGGTGAGGTCGAGGACCGCATTATCGGCGGGTTCCCGAGTAGCTCTCCCCCGCCGCCGAATCTCGTTAGTCCTAG TAAACCCGGGACGTCGAATGGACTTGGCTCCGGTCGGACTCTGCCCCCGCTCCAGTCAGATTCGGGGGATATGGG ACCCAACGGGACGTCTCATGCGAGGAATGAAGAGCGAGAAGAGGAGGATGATGATGATAATGGATCGGGGTTTGA TCTTGCTAGGTAGGTTTTCTTTTATACACTTGGTCGGCGCGCAGAAACTAATACTATTTTCAGAGGTTTCGAACC TATCGGCTCATACCATCGACAACTAGGCAATGCTGCCCGTGCGGCTGCTACGTGA |