© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2680.t1 |
| Gene name | |
| Location | scaffold_03:668707..671096 |
| Strand | - |
| Gene length (bp) | 2389 |
| Transcript length (bp) | 2085 |
| Coding sequence length (bp) | 2085 |
| Protein length (aa) | 695 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00534 | Glycos_transf_1 | Glycosyl transferases group 1 | 2.7E-17 | 457 | 629 |
| PF13692 | Glyco_trans_1_4 | Glycosyl transferases group 1 | 4.1E-12 | 481 | 618 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | Yes |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 332.33 | 186.95 | 477.72 |
| 5d_25C | Five days - 25 degrees Celsius | 518.98 | 276.07 | 761.88 |
| 7d_25C | Seven days - 25 degrees Celsius | 473.10 | 249.48 | 696.71 |
| 10d_25C | Ten days - 25 degrees Celsius | 652.49 | 338.07 | 966.91 |
| 7d_15C | Seven days - 15 degrees Celsius | 560.98 | 273.96 | 848.01 |
| 7d_30C | Seven days - 30 degrees Celsius | 469.01 | 244.25 | 693.78 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.068408 | no |
| 3d_25C | 7d_25C | 0.180386 | no |
| 3d_25C | 7d_15C | 0.042614 | yes |
| 3d_25C | 7d_30C | 0.192905 | no |
| 3d_25C | 10d_25C | 0.003625 | yes |
| 5d_25C | 7d_25C | 0.796779 | no |
| 5d_25C | 7d_15C | 0.841398 | no |
| 5d_25C | 7d_30C | 0.774924 | no |
| 5d_25C | 10d_25C | 0.436931 | no |
| 7d_25C | 7d_15C | 0.617927 | no |
| 7d_25C | 7d_30C | 0.985642 | no |
| 7d_25C | 10d_25C | 0.246079 | no |
| 7d_15C | 7d_30C | 0.595462 | no |
| 7d_15C | 10d_25C | 0.662459 | no |
| 7d_30C | 10d_25C | 0.237906 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2680.t1 MPGEGQSFERHASVTQQRRLALQYKRNAWLGPPSDAIYAGISSNFHDYHTSTIAIAIRDTTYLLDFLQKQFSPDQ ASTEEATDFIISELKAYSMNHLEKIIGIAMPEHVANHCTRLCPRLWAELDIIPLVLSNATLIDRVNIGQVSETRD PGSNGWSEKTIDEQAESMARKGVRLFGPDNMPLLQVGFFGLVEVDTAYHVQMADLSDFQKTVSDRTWSAMQHYAN ELKERNTKVAFFSSTPQGGGVALMRHALLRFSHCLGTNIKWYVPKPRPGVFRVTKTNHNILQGVADQDDRLTPEN KKLLTEWIEENTRRYWTRPGGPLLSPAEGGADVVIVDDPQMPGIIPIAKRLAPNRPVIFRSHIQIRSDLVAISGS PQAEAWEYLWDSIKQADCFISHPVSAFVPRNVPPEIVGYMPASTDWLDGLNKTMRDWDIAYYGRIFNTGCHNSDM PTIQWPEDSYIVQIARFDPSKGIVDVLVSYEKFYNKLVAEAPDMHPPKLVICGDRSVDDPDGGRIYDDVVDYLDK RVPDIRHLICAMRVRPCDRILNAILSKATIALQLSTSEGFEVKVSEAIHKGKPVIATRAGGIPLQVTHGKNGFLV DVGDTDAVAQRLFELWTNHDLYTRMSEYGMQNVSDEVSTVGNALAWLYLSSKLPYGPVLPNGRWIEDMAFEEIGL PNKNDDLRLKRAVQVENMG* |
| Coding | >Pro_DTO377G3_2|g2680.t1 ATGCCCGGCGAAGGACAATCGTTCGAACGCCATGCCTCAGTCACACAGCAGCGTCGACTCGCGCTACAGTACAAG CGTAACGCTTGGTTAGGGCCACCGTCGGATGCTATCTACGCCGGTATCTCTAGCAACTTTCATGATTACCATACG TCAACTATAGCGATCGCAATCCGCGATACCACATATTTACTAGACTTCCTCCAGAAGCAGTTCTCACCCGATCAA GCCTCTACAGAGGAGGCCACCGACTTCATCATTTCCGAGCTGAAGGCATATTCTATGAATCATCTGGAGAAAATT ATTGGGATAGCAATGCCTGAACATGTTGCAAATCACTGCACTCGACTGTGCCCTCGCCTTTGGGCGGAGCTCGAC ATCATTCCCTTGGTCTTGTCGAACGCAACACTAATAGACAGAGTCAACATCGGACAGGTTAGCGAGACCCGAGAC CCGGGATCTAATGGATGGAGTGAGAAGACGATCGACGAGCAGGCTGAATCCATGGCGCGAAAAGGTGTTAGGCTA TTTGGACCGGACAACATGCCCCTGCTACAAGTGGGCTTCTTCGGGCTTGTGGAAGTAGACACAGCCTACCATGTG CAAATGGCGGATCTGAGCGATTTTCAGAAAACCGTCTCGGATAGAACTTGGTCCGCGATGCAGCACTATGCCAAT GAATTGAAAGAACGCAATACCAAAGTGGCATTTTTCAGCTCCACGCCTCAGGGTGGTGGTGTGGCTTTGATGCGG CATGCTCTCTTGCGATTTTCACATTGTCTGGGTACCAACATTAAATGGTACGTCCCGAAACCACGCCCGGGCGTC TTCCGAGTGACCAAAACAAACCACAATATCCTGCAAGGTGTCGCCGATCAAGATGACCGCTTAACACCAGAGAAC AAGAAACTCCTGACGGAGTGGATTGAGGAGAATACCAGGCGATACTGGACCCGACCAGGCGGACCTTTACTTTCA CCAGCAGAGGGCGGCGCAGATGTCGTAATCGTCGACGATCCCCAGATGCCAGGCATCATTCCCATCGCAAAGAGA CTAGCTCCAAATCGACCAGTTATATTTCGAAGCCACATTCAAATTCGAAGTGACCTGGTTGCAATATCTGGCTCT CCACAGGCAGAGGCCTGGGAATACCTGTGGGATAGTATTAAACAAGCAGACTGTTTTATCAGTCACCCTGTGAGC GCATTCGTGCCACGGAATGTGCCCCCAGAGATAGTAGGCTATATGCCTGCATCAACTGACTGGCTGGACGGGCTG AACAAAACCATGCGCGACTGGGACATCGCGTACTATGGCCGCATCTTCAATACAGGCTGTCACAACTCGGATATG CCAACTATCCAATGGCCCGAGGACTCATATATCGTCCAGATCGCGCGGTTCGACCCGTCAAAAGGCATCGTGGAT GTGTTAGTTTCGTACGAGAAATTTTACAACAAACTAGTAGCCGAAGCGCCTGATATGCACCCTCCCAAACTAGTG ATTTGTGGAGACCGCTCAGTAGATGATCCCGACGGAGGGCGGATCTACGACGATGTAGTCGACTACCTGGACAAA AGAGTCCCAGATATCCGCCATCTGATCTGCGCGATGCGGGTGCGGCCCTGCGACCGAATCCTGAACGCCATTCTC TCCAAGGCGACTATCGCACTGCAACTATCTACATCCGAAGGTTTCGAGGTAAAAGTCTCCGAGGCAATCCACAAA GGCAAACCAGTAATCGCCACGCGTGCCGGCGGCATCCCGTTGCAGGTGACGCACGGGAAGAATGGGTTCTTGGTT GATGTTGGCGATACCGATGCTGTGGCGCAGCGCTTGTTTGAGCTCTGGACAAATCACGATCTGTATACCCGCATG TCGGAATACGGCATGCAAAATGTAAGTGATGAAGTGAGTACCGTGGGAAATGCTCTCGCCTGGCTCTATCTCTCT TCCAAGTTGCCGTATGGACCTGTTCTGCCCAATGGACGTTGGATCGAGGATATGGCGTTTGAAGAGATTGGTCTC CCTAACAAGAACGACGATTTGCGGCTCAAACGCGCAGTCCAGGTGGAGAATATGGGTTAG |
| Transcript | >Pro_DTO377G3_2|g2680.t1 ATGCCCGGCGAAGGACAATCGTTCGAACGCCATGCCTCAGTCACACAGCAGCGTCGACTCGCGCTACAGTACAAG CGTAACGCTTGGTTAGGGCCACCGTCGGATGCTATCTACGCCGGTATCTCTAGCAACTTTCATGATTACCATACG TCAACTATAGCGATCGCAATCCGCGATACCACATATTTACTAGACTTCCTCCAGAAGCAGTTCTCACCCGATCAA GCCTCTACAGAGGAGGCCACCGACTTCATCATTTCCGAGCTGAAGGCATATTCTATGAATCATCTGGAGAAAATT ATTGGGATAGCAATGCCTGAACATGTTGCAAATCACTGCACTCGACTGTGCCCTCGCCTTTGGGCGGAGCTCGAC ATCATTCCCTTGGTCTTGTCGAACGCAACACTAATAGACAGAGTCAACATCGGACAGGTTAGCGAGACCCGAGAC CCGGGATCTAATGGATGGAGTGAGAAGACGATCGACGAGCAGGCTGAATCCATGGCGCGAAAAGGTGTTAGGCTA TTTGGACCGGACAACATGCCCCTGCTACAAGTGGGCTTCTTCGGGCTTGTGGAAGTAGACACAGCCTACCATGTG CAAATGGCGGATCTGAGCGATTTTCAGAAAACCGTCTCGGATAGAACTTGGTCCGCGATGCAGCACTATGCCAAT GAATTGAAAGAACGCAATACCAAAGTGGCATTTTTCAGCTCCACGCCTCAGGGTGGTGGTGTGGCTTTGATGCGG CATGCTCTCTTGCGATTTTCACATTGTCTGGGTACCAACATTAAATGGTACGTCCCGAAACCACGCCCGGGCGTC TTCCGAGTGACCAAAACAAACCACAATATCCTGCAAGGTGTCGCCGATCAAGATGACCGCTTAACACCAGAGAAC AAGAAACTCCTGACGGAGTGGATTGAGGAGAATACCAGGCGATACTGGACCCGACCAGGCGGACCTTTACTTTCA CCAGCAGAGGGCGGCGCAGATGTCGTAATCGTCGACGATCCCCAGATGCCAGGCATCATTCCCATCGCAAAGAGA CTAGCTCCAAATCGACCAGTTATATTTCGAAGCCACATTCAAATTCGAAGTGACCTGGTTGCAATATCTGGCTCT CCACAGGCAGAGGCCTGGGAATACCTGTGGGATAGTATTAAACAAGCAGACTGTTTTATCAGTCACCCTGTGAGC GCATTCGTGCCACGGAATGTGCCCCCAGAGATAGTAGGCTATATGCCTGCATCAACTGACTGGCTGGACGGGCTG AACAAAACCATGCGCGACTGGGACATCGCGTACTATGGCCGCATCTTCAATACAGGCTGTCACAACTCGGATATG CCAACTATCCAATGGCCCGAGGACTCATATATCGTCCAGATCGCGCGGTTCGACCCGTCAAAAGGCATCGTGGAT GTGTTAGTTTCGTACGAGAAATTTTACAACAAACTAGTAGCCGAAGCGCCTGATATGCACCCTCCCAAACTAGTG ATTTGTGGAGACCGCTCAGTAGATGATCCCGACGGAGGGCGGATCTACGACGATGTAGTCGACTACCTGGACAAA AGAGTCCCAGATATCCGCCATCTGATCTGCGCGATGCGGGTGCGGCCCTGCGACCGAATCCTGAACGCCATTCTC TCCAAGGCGACTATCGCACTGCAACTATCTACATCCGAAGGTTTCGAGGTAAAAGTCTCCGAGGCAATCCACAAA GGCAAACCAGTAATCGCCACGCGTGCCGGCGGCATCCCGTTGCAGGTGACGCACGGGAAGAATGGGTTCTTGGTT GATGTTGGCGATACCGATGCTGTGGCGCAGCGCTTGTTTGAGCTCTGGACAAATCACGATCTGTATACCCGCATG TCGGAATACGGCATGCAAAATGTAAGTGATGAAGTGAGTACCGTGGGAAATGCTCTCGCCTGGCTCTATCTCTCT TCCAAGTTGCCGTATGGACCTGTTCTGCCCAATGGACGTTGGATCGAGGATATGGCGTTTGAAGAGATTGGTCTC CCTAACAAGAACGACGATTTGCGGCTCAAACGCGCAGTCCAGGTGGAGAATATGGGTTAG |
| Gene | >Pro_DTO377G3_2|g2680.t1 ATGCCCGGCGAAGGACAATCGTTCGAACGCCATGCCTCAGTCACACAGCAGCGTCGACTCGCGCTACAGTACAAG CGTAACGCTTGGTTAGGGCCACCGTCGGATGTATGAATGTCTCCGAAGTAGCAGTAAAAGCCACTTCTCGAAATT CTCAATACTAATAGGAATACTAGGCTATCTACGCCGGTATCTCTAGCAACTTTCATGATTACCATACGTCAACTA TAGCGATCGCAATCCGCGATACCACATATTTACTAGACTTCCTCCAGAAGCAGTTCTCACCCGATCAAGCCTCTA CAGAGGAGGCCACCGACTTCATCATTTCCGAGCTGAAGGCATATTCTATGAATCATCTGGAGAAAATTATTGGGA TAGCAATGCCTGAACATGTTGCAAATCACTGCACTCGACTGTGCCCTCGCCTTTGGGCGGAGCTCGACATCATTC CCTTGGTCTTGTCGAACGCAACACTAATAGACAGAGTCAACATCGGACAGGTTAGCGAGACCCGAGACCCGGGAT CTAATGGATGGAGTGAGAAGACGATCGACGAGCAGGCTGAATCCATGGCGCGAAAAGGTGTTAGGTTAGTTGGTC CCGCTCAATGCCATAAAGGAGCCATTGGGTCTAAGTGCGCGCAGGCTATTTGGACCGGACAACATGCCCCTGCTA CAAGTGGGCTTCTTCGGGCTTGTGGAAGTAGACACAGCCTACCATGTGCAAATGGCGGATCTGAGCGATTTTCAG AAAACCGTCTCGGATAGAACTTGGTCCGCGATGCAGCACTATGCCAATGAATTGAAAGAACGCAATACCAAAGTG GCATTTTTCAGCTCCACGCCTCAGGGTGGTGGTGTGGCTTTGATGCGGCATGCTCTCTTGCGATTTTCACATTGT CTGGGTACCAACATTAAATGGTGTGTCTGTGCCGGTATCTGTGTCTTGAAATATGAAGCCTAACTCAATTATTGT AGGTACGTCCCGAAACCACGCCCGGGCGTCTTCCGAGTGACCAAAACAAACCACAATATCCTGCAAGGTGTCGCC GATCAAGATGACCGCTTAACACCAGAGAACAAGAAACTCCTGACGGAGTGGATTGAGGAGAATACCAGGCGATAC TGGACCCGACCAGGCGGACCTTTACTTTCACCAGCAGAGGGCGGCGCAGATGTCGTAATCGTCGACGATCCCCAG ATGCCAGGCATCATTCCCATCGCAAAGAGACTAGCTCCAAATCGACCAGTTATATTTCGAAGCCACATTCAAATT CGAAGTGACCTGGTTGCAATATCTGGCTCTCCACAGGCAGAGGCCTGGGAATACCTGTGGGATAGTATTAAACAA GCAGACTGTTTTATCAGTCACCCTGTGAGCGCATTCGTGCCACGGAATGTGCCCCCAGAGATAGTAGGCTATATG CCTGCATCAACTGACTGGTAAGGGCCGAAGTCCGATAATCTGCTTGCATCTGTCATCTCACTGACCGGGACATAG GCTGGACGGGCTGAACAAAACCATGCGCGACTGGGACATCGCGTACTATGGCCGCATCTTCAATACAGGCTGTCA CAACTCGGATATGCCAACTATCCAATGGCCCGAGGGTTAGTACCTGAACCAGAACTAGTTATGATGATCACATTC CACGGTGAAAGCTAACACGAGGATAGACTCATATATCGTCCAGATCGCGCGGTTCGACCCGTCAAAAGGCATCGT GGATGTGTTAGTTTCGTACGAGAAATTTTACAACAAACTAGTAGCCGAAGCGCCTGATATGCACCCTCCCAAACT AGTGATTTGTGGAGACCGCTCAGTAGATGATCCCGACGGAGGGCGGATCTACGACGATGTAGTCGACTACCTGGA CAAAAGAGTCCCAGATATCCGCCATCTGATCTGCGCGATGCGGGTGCGGCCCTGCGACCGAATCCTGAACGCCAT TCTCTCCAAGGCGACTATCGCACTGCAACTATCTACATCCGAAGGTTTCGAGGTAAAAGTCTCCGAGGCAATCCA CAAAGGCAAACCAGTAATCGCCACGCGTGCCGGCGGCATCCCGTTGCAGGTGACGCACGGGAAGAATGGGTTCTT GGTTGATGTTGGCGATACCGATGCTGTGGCGCAGCGCTTGTTTGAGCTCTGGACAAATCACGATCTGTATACCCG CATGTCGGAATACGGCATGCAAAATGTAAGTGATGAAGTGAGTACCGTGGGAAATGCTCTCGCCTGGCTCTATCT CTCTTCCAAGTTGCCGTATGGACCTGTTCTGCCCAATGGACGTTGGATCGAGGATATGGCGTTTGAAGAGATTGG TCTCCCTAACAAGAACGACGATTTGCGGCTCAAACGCGCAGTCCAGGTGGAGAATATGGGTTAG |