Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2673.t1
Gene name
Locationscaffold_03:649777..650430
Strand-
Gene length (bp)653
Transcript length (bp)453
Coding sequence length (bp)453
Protein length (aa) 151

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13639 zf-RING_2 Ring finger domain 1.5E-10 90 131
PF17123 zf-RING_11 RING-like zinc finger 1.8E-08 90 117
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 2.3E-07 90 131
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 4.7E-07 90 131
PF13445 zf-RING_UBOX RING-type zinc-finger 1.2E-05 90 129

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0043169 cation binding No
GO:0005488 binding No
GO:0043167 ion binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.5

Transmembrane Domains

Domain # Start End Length
1 13 35 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2673.t1
MAEDAKLKKNHMAIVLGIGLGVVLLIALSLILTILINRRDRQSFLRSRKNPTERLRKLDKVSPTCTLEKWWATTK
GNLGLSEAVDGQFVCAVCLEQVDRTQEIRDLRCLHVFHRECLEKWFLGDHFNCPLCHRAYYVADTPPRTDYLWMV
*
Coding >Pro_DTO377G3_2|g2673.t1
ATGGCTGAAGACGCGAAACTGAAGAAGAACCATATGGCGATAGTCTTGGGCATCGGACTTGGAGTGGTGCTGCTT
ATCGCACTTAGTTTGATTCTGACAATACTCATCAACCGCCGGGACAGGCAGTCATTCTTGAGATCAAGGAAAAAT
CCTACTGAGCGGTTGCGCAAGTTGGACAAGGTCTCGCCAACTTGTACCCTCGAGAAGTGGTGGGCGACCACGAAG
GGGAATCTCGGACTGTCCGAGGCCGTCGATGGACAGTTCGTTTGCGCCGTTTGTTTGGAGCAGGTAGACCGCACG
CAGGAGATCCGCGACCTGCGGTGCTTGCACGTTTTTCACCGGGAATGCCTGGAGAAGTGGTTCTTGGGTGACCAT
TTCAATTGCCCGCTGTGTCATCGCGCATACTATGTGGCAGACACACCTCCCCGCACAGATTATCTGTGGATGGTA
TGA
Transcript >Pro_DTO377G3_2|g2673.t1
ATGGCTGAAGACGCGAAACTGAAGAAGAACCATATGGCGATAGTCTTGGGCATCGGACTTGGAGTGGTGCTGCTT
ATCGCACTTAGTTTGATTCTGACAATACTCATCAACCGCCGGGACAGGCAGTCATTCTTGAGATCAAGGAAAAAT
CCTACTGAGCGGTTGCGCAAGTTGGACAAGGTCTCGCCAACTTGTACCCTCGAGAAGTGGTGGGCGACCACGAAG
GGGAATCTCGGACTGTCCGAGGCCGTCGATGGACAGTTCGTTTGCGCCGTTTGTTTGGAGCAGGTAGACCGCACG
CAGGAGATCCGCGACCTGCGGTGCTTGCACGTTTTTCACCGGGAATGCCTGGAGAAGTGGTTCTTGGGTGACCAT
TTCAATTGCCCGCTGTGTCATCGCGCATACTATGTGGCAGACACACCTCCCCGCACAGATTATCTGTGGATGGTA
TGA
Gene >Pro_DTO377G3_2|g2673.t1
ATGGCTGAAGACGCGAAACTGAAGAAGAACCATATGGCGATAGTCTTGGGCATCGGACTTGGAGTGGTGCTGCTT
ATCGCACTTAGTTTGATGTGAGTTAGATTCGATTTTTGCATCTTAGTGTATGCTATCTCTTGTGTCTCCTCCGTC
CTTTCCCCATTCTCACCGATACATTTCCTCCGTCGGTTGTGACTTGTTACATAAACCATGCCACTCCATTCCACG
CTAACCGTGTCATTCAGTCTGACAATACTCATCAACCGCCGGGACAGGCAGTCATTCTTGAGATCAAGGAAAAAT
CCTACTGAGCGGTTGCGCAAGTTGGACAAGGTCTCGCCAACTTGTACCCTCGAGAAGTGGTGGGCGACCACGAAG
GGGAATCTCGGACTGTCCGAGGCCGTCGATGGACAGTTCGTTTGGTATGTCTACCTTGCTTTGCCGGTAGAACAG
TCGCTGACATTCTGTTCAGCGCCGTTTGTTTGGAGCAGGTAGACCGCACGCAGGAGATCCGCGACCTGCGGTGCT
TGCACGTTTTTCACCGGGAATGCCTGGAGAAGTGGTTCTTGGGTGACCATTTCAATTGCCCGCTGTGTCATCGCG
CATACTATGTGGCAGACACACCTCCCCGCACAGATTATCTGTGGATGGTATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail