Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g2663.t1
Gene name
Location	scaffold_03:628008..629987
Strand	-
Gene length (bp)	1979
Transcript length (bp)	1776
Coding sequence length (bp)	1776
Protein length (aa)	592

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00152	tRNA-synt_2	tRNA synthetases class II (D, K and N)	7.0E-72	258	585

GO

GO Term	Description	Terminal node
GO:0005524	ATP binding	Yes
GO:0004812	aminoacyl-tRNA ligase activity	Yes
GO:0000166	nucleotide binding	Yes
GO:0006418	tRNA aminoacylation for protein translation	Yes
GO:0043039	tRNA aminoacylation	No
GO:0005488	binding	No
GO:0016875	ligase activity, forming carbon-oxygen bonds	No
GO:0006520	cellular amino acid metabolic process	No
GO:0008152	metabolic process	No
GO:0006399	tRNA metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:0030554	adenyl nucleotide binding	No
GO:0006082	organic acid metabolic process	No
GO:0071704	organic substance metabolic process	No
GO:0036094	small molecule binding	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0097367	carbohydrate derivative binding	No
GO:0017076	purine nucleotide binding	No
GO:0008150	biological_process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0043167	ion binding	No
GO:0019752	carboxylic acid metabolic process	No
GO:0016070	RNA metabolic process	No
GO:0032559	adenyl ribonucleotide binding	No
GO:0035639	purine ribonucleoside triphosphate binding	No
GO:0003824	catalytic activity	No
GO:0043038	amino acid activation	No
GO:0140640	catalytic activity, acting on a nucleic acid	No
GO:0044238	primary metabolic process	No
GO:0034660	ncRNA metabolic process	No
GO:0009987	cellular process	No
GO:1901564	organonitrogen compound metabolic process	No
GO:0044237	cellular metabolic process	No
GO:0090304	nucleic acid metabolic process	No
GO:0043168	anion binding	No
GO:1901363	heterocyclic compound binding	No
GO:0140101	catalytic activity, acting on a tRNA	No
GO:0043436	oxoacid metabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0140098	catalytic activity, acting on RNA	No
GO:0032555	purine ribonucleotide binding	No
GO:0032553	ribonucleotide binding	No
GO:0097159	organic cyclic compound binding	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0016874	ligase activity	No
GO:0006807	nitrogen compound metabolic process	No
GO:0044281	small molecule metabolic process	No
GO:0003674	molecular_function	No
GO:0046483	heterocycle metabolic process	No
GO:1901265	nucleoside phosphate binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 56	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	62.31	38.17	86.45
5d_25C	Five days - 25 degrees Celsius	47.47	28.52	66.41
7d_25C	Seven days - 25 degrees Celsius	35.32	20.56	50.07
10d_25C	Ten days - 25 degrees Celsius	25.29	14.05	36.52
7d_15C	Seven days - 15 degrees Celsius	59.10	35.96	82.25
7d_30C	Seven days - 30 degrees Celsius	45.90	27.52	64.27

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.233629	no
3d_25C	7d_25C	0.008469	yes
3d_25C	7d_15C	0.864654	no
3d_25C	7d_30C	0.171107	no
3d_25C	10d_25C	0.000700	yes
5d_25C	7d_25C	0.220632	no
5d_25C	7d_15C	0.377840	no
5d_25C	7d_30C	0.922536	no
5d_25C	10d_25C	0.004840	yes
7d_25C	7d_15C	0.011388	yes
7d_25C	7d_30C	0.292133	no
7d_25C	10d_25C	0.173911	no
7d_15C	7d_30C	0.294003	no
7d_15C	10d_25C	0.000700	yes
7d_30C	10d_25C	0.006371	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g2663.t1 MDVLRTYTVKVDLPKSPHRLPLLGLDHSAGKSLTTMADSELPHRPKPEAQDASAPAAEGETKNASKNALKKAAKD KAKAEKAAARAAQEKAQAAAQEANDTAKDLYGPLPEAENAIPSTRFSELSEEHYEKEVTVVARVDNARVQSAKLA FLMLRQQGQKVQAVIAAAEPISRQMIKYTGGLNVNSIVQITGIVKKPEIPISSASISHLEIHIRKVYMISEAAQM LPMQVKDAERPPPESIDEGAQVDAEGAPIVTLKTRLDNRVLDLQTETSQAITWISSGVSQLFAEYMIKSGSRWIS TPKLVGAATEGGSGVFEVKYFKRNAYLAQSPQLYKQMCIAGDMENVFEIAPVFRAEDSNTHRHLTEFSGLDFEKT FRGHYHEVLEFAEDLLVFILTQLKERYATQIATIQKSYPKAGDFKLPKDGKALRLNYMDGVALLKEAGVDVSEQE RFENDFSTAMEKQLGQIIREKYDTDFYVLDKFPMAVRPFYTKADPDDKRFSNSYDFFMRGEEIMSGAQRINDIKE LEESMRSKGLEPNQEGFEDYLNAFRQGCPPHAGGGLGLNRIVMFFLGLPNVRLASLFPRDPQRLRP*
Coding	>Pro_DTO377G3_2\|g2663.t1 ATGGATGTACTCCGTACATATACAGTCAAGGTAGATCTGCCTAAGTCTCCACACCGCCTACCCCTCTTAGGGCTT GATCATTCGGCGGGAAAATCATTAACCACCATGGCCGACTCCGAATTGCCCCACCGTCCCAAGCCCGAGGCCCAG GATGCCTCCGCTCCCGCCGCGGAAGGTGAGACCAAGAACGCAAGCAAGAACGCACTGAAGAAGGCCGCAAAGGAT AAGGCCAAGGCAGAGAAGGCTGCGGCGCGTGCAGCGCAAGAAAAGGCCCAGGCCGCCGCCCAGGAGGCCAACGAC ACGGCCAAGGATCTATACGGCCCTCTCCCAGAGGCCGAGAACGCCATCCCGTCTACACGATTCAGCGAACTCTCA GAGGAACACTACGAGAAGGAGGTGACAGTTGTGGCGCGTGTGGACAATGCGCGTGTGCAGAGTGCTAAGCTTGCA TTCTTGATGCTGCGCCAGCAGGGACAAAAAGTGCAGGCCGTCATTGCGGCCGCGGAGCCCATCTCGCGACAGATG ATCAAGTACACCGGGGGCCTGAACGTCAACTCGATTGTGCAGATCACCGGTATTGTGAAGAAGCCCGAGATTCCG ATCTCGTCTGCGTCCATTAGCCACCTCGAGATCCACATTCGCAAGGTCTATATGATCTCCGAGGCTGCGCAGATG CTCCCTATGCAAGTCAAGGATGCTGAGCGCCCGCCCCCAGAGAGCATTGATGAAGGTGCTCAGGTTGATGCCGAG GGTGCTCCAATCGTCACCCTCAAGACTCGCCTTGATAACCGGGTCCTCGATCTGCAGACTGAAACCAGCCAGGCC ATCACCTGGATTTCCAGCGGTGTCTCCCAGCTATTTGCTGAGTACATGATTAAGAGTGGCTCCCGGTGGATCTCC ACACCTAAGCTGGTTGGTGCCGCCACAGAAGGTGGCAGCGGTGTCTTCGAGGTGAAGTACTTCAAGCGCAATGCC TACTTGGCGCAGAGCCCCCAGCTATACAAGCAGATGTGTATCGCCGGTGATATGGAGAACGTATTCGAGATCGCC CCCGTATTCCGTGCCGAGGACAGCAACACCCACCGCCACTTGACTGAGTTCTCCGGTCTCGATTTCGAGAAGACC TTCCGCGGCCACTACCACGAGGTTCTGGAGTTCGCTGAAGACCTCCTTGTCTTCATCCTCACCCAGCTCAAGGAG CGCTACGCAACCCAGATCGCCACCATCCAAAAGTCCTACCCCAAGGCCGGCGACTTCAAGCTTCCCAAGGACGGT AAGGCGCTGCGCTTGAACTACATGGACGGTGTTGCGCTACTGAAGGAAGCCGGTGTCGACGTCTCAGAGCAAGAA CGCTTCGAGAACGACTTCTCTACCGCGATGGAGAAGCAGCTCGGCCAAATCATCCGCGAGAAGTACGACACCGAC TTCTACGTGCTCGACAAGTTCCCCATGGCTGTCCGTCCCTTCTACACCAAGGCCGATCCCGACGACAAGCGCTTC TCTAACTCGTACGACTTCTTCATGCGTGGCGAGGAGATCATGTCTGGTGCCCAGCGTATCAACGATATCAAGGAG TTGGAGGAGTCTATGCGCTCTAAGGGTCTCGAGCCTAACCAGGAGGGCTTCGAGGATTACCTCAATGCTTTCCGC CAGGGTTGCCCCCCTCACGCTGGCGGTGGTCTTGGTCTAAACCGTATTGTTATGTTCTTCCTTGGCTTGCCTAAC GTCCGTTTGGCTTCGCTGTTCCCCCGTGACCCTCAGCGTCTGCGTCCTTGA
Transcript	>Pro_DTO377G3_2\|g2663.t1 ATGGATGTACTCCGTACATATACAGTCAAGGTAGATCTGCCTAAGTCTCCACACCGCCTACCCCTCTTAGGGCTT GATCATTCGGCGGGAAAATCATTAACCACCATGGCCGACTCCGAATTGCCCCACCGTCCCAAGCCCGAGGCCCAG GATGCCTCCGCTCCCGCCGCGGAAGGTGAGACCAAGAACGCAAGCAAGAACGCACTGAAGAAGGCCGCAAAGGAT AAGGCCAAGGCAGAGAAGGCTGCGGCGCGTGCAGCGCAAGAAAAGGCCCAGGCCGCCGCCCAGGAGGCCAACGAC ACGGCCAAGGATCTATACGGCCCTCTCCCAGAGGCCGAGAACGCCATCCCGTCTACACGATTCAGCGAACTCTCA GAGGAACACTACGAGAAGGAGGTGACAGTTGTGGCGCGTGTGGACAATGCGCGTGTGCAGAGTGCTAAGCTTGCA TTCTTGATGCTGCGCCAGCAGGGACAAAAAGTGCAGGCCGTCATTGCGGCCGCGGAGCCCATCTCGCGACAGATG ATCAAGTACACCGGGGGCCTGAACGTCAACTCGATTGTGCAGATCACCGGTATTGTGAAGAAGCCCGAGATTCCG ATCTCGTCTGCGTCCATTAGCCACCTCGAGATCCACATTCGCAAGGTCTATATGATCTCCGAGGCTGCGCAGATG CTCCCTATGCAAGTCAAGGATGCTGAGCGCCCGCCCCCAGAGAGCATTGATGAAGGTGCTCAGGTTGATGCCGAG GGTGCTCCAATCGTCACCCTCAAGACTCGCCTTGATAACCGGGTCCTCGATCTGCAGACTGAAACCAGCCAGGCC ATCACCTGGATTTCCAGCGGTGTCTCCCAGCTATTTGCTGAGTACATGATTAAGAGTGGCTCCCGGTGGATCTCC ACACCTAAGCTGGTTGGTGCCGCCACAGAAGGTGGCAGCGGTGTCTTCGAGGTGAAGTACTTCAAGCGCAATGCC TACTTGGCGCAGAGCCCCCAGCTATACAAGCAGATGTGTATCGCCGGTGATATGGAGAACGTATTCGAGATCGCC CCCGTATTCCGTGCCGAGGACAGCAACACCCACCGCCACTTGACTGAGTTCTCCGGTCTCGATTTCGAGAAGACC TTCCGCGGCCACTACCACGAGGTTCTGGAGTTCGCTGAAGACCTCCTTGTCTTCATCCTCACCCAGCTCAAGGAG CGCTACGCAACCCAGATCGCCACCATCCAAAAGTCCTACCCCAAGGCCGGCGACTTCAAGCTTCCCAAGGACGGT AAGGCGCTGCGCTTGAACTACATGGACGGTGTTGCGCTACTGAAGGAAGCCGGTGTCGACGTCTCAGAGCAAGAA CGCTTCGAGAACGACTTCTCTACCGCGATGGAGAAGCAGCTCGGCCAAATCATCCGCGAGAAGTACGACACCGAC TTCTACGTGCTCGACAAGTTCCCCATGGCTGTCCGTCCCTTCTACACCAAGGCCGATCCCGACGACAAGCGCTTC TCTAACTCGTACGACTTCTTCATGCGTGGCGAGGAGATCATGTCTGGTGCCCAGCGTATCAACGATATCAAGGAG TTGGAGGAGTCTATGCGCTCTAAGGGTCTCGAGCCTAACCAGGAGGGCTTCGAGGATTACCTCAATGCTTTCCGC CAGGGTTGCCCCCCTCACGCTGGCGGTGGTCTTGGTCTAAACCGTATTGTTATGTTCTTCCTTGGCTTGCCTAAC GTCCGTTTGGCTTCGCTGTTCCCCCGTGACCCTCAGCGTCTGCGTCCTTGA
Gene	>Pro_DTO377G3_2\|g2663.t1 ATGGATGTACTCCGTACATATACAGTCAAGGTAGATCTGCCTAAGTCTCCACACCGCCTACCCCTCTTAGGGCTT GATCATTCGGCGGGGTGAGTCGACGAAACAGTTTTCTCCGCAGCTCTACTTACAATCAGCCTGCTGCATTAACTC CTGCAAATTTCTCAGGATAGAAAATCATTAACGTAGGATCCAACATACCTGACCTAACACTTTGCTCCCTCTAAT TGTCTTTGCAGCACCATGGCCGACTCCGAATTGCCCCACCGTCCCAAGCCCGAGGCCCAGGATGCCTCCGCTCCC GCCGCGGAAGGTGAGACCAAGAACGCAAGCAAGAACGCACTGAAGAAGGCCGCAAAGGATAAGGCCAAGGCAGAG AAGGCTGCGGCGCGTGCAGCGCAAGAAAAGGCCCAGGCCGCCGCCCAGGAGGCCAACGACACGGCCAAGGATCTA TACGGCCCTCTCCCAGAGGCCGAGAACGCCATCCCGTCTACACGATTCAGCGAACTCTCAGAGGAACACTACGAG AAGGAGGTGACAGTTGTGGCGCGTGTGGACAATGCGCGTGTGCAGAGTGCTAAGCTTGCATTCTTGATGCTGCGC CAGCAGGGACAAAAAGTGCAGGCCGTCATTGCGGCCGCGGAGCCCATCTCGCGACAGATGATCAAGTACACCGGG GGCCTGAACGTCAACTCGATTGTGCAGATCACCGGTATTGTGAAGAAGCCCGAGATTCCGATCTCGTCTGCGTCC ATTAGCCACCTCGAGATCCACATTCGCAAGGTCTATATGATCTCCGAGGCTGCGCAGATGCTCCCTATGCAAGTC AAGGATGCTGAGCGCCCGCCCCCAGAGAGCATTGATGAAGGTGCTCAGGTTGATGCCGAGGGTGCTCCAATCGTC ACCCTCAAGACTCGCCTTGATAACCGGGTCCTCGATCTGCAGACTGAAACCAGCCAGGCCATCACCTGGATTTCC AGCGGTGTCTCCCAGCTATTTGCTGAGTACATGATTAAGAGTGGCTCCCGGTGGATCTCCACACCTAAGCTGGTT GGTGCCGCCACAGAAGGTGGCAGCGGTGTCTTCGAGGTGAAGTACTTCAAGCGCAATGCCTACTTGGCGCAGAGC CCCCAGCTATACAAGCAGATGTGTATCGCCGGTGATATGGAGAACGTATTCGAGATCGCCCCCGTATTCCGTGCC GAGGACAGCAACACCCACCGCCACTTGACTGAGGTATGACCTACTGATATATTTTCCCGAACAGGAAAAAAAGAA ACAGATTATTCTGACATGACTTACAGTTCTCCGGTCTCGATTTCGAGAAGACCTTCCGCGGCCACTACCACGAGG TTCTGGAGTTCGCTGAAGACCTCCTTGTCTTCATCCTCACCCAGCTCAAGGAGCGCTACGCAACCCAGATCGCCA CCATCCAAAAGTCCTACCCCAAGGCCGGCGACTTCAAGCTTCCCAAGGACGGTAAGGCGCTGCGCTTGAACTACA TGGACGGTGTTGCGCTACTGAAGGAAGCCGGTGTCGACGTCTCAGAGCAAGAACGCTTCGAGAACGACTTCTCTA CCGCGATGGAGAAGCAGCTCGGCCAAATCATCCGCGAGAAGTACGACACCGACTTCTACGTGCTCGACAAGTTCC CCATGGCTGTCCGTCCCTTCTACACCAAGGCCGATCCCGACGACAAGCGCTTCTCTAACTCGTACGACTTCTTCA TGCGTGGCGAGGAGATCATGTCTGGTGCCCAGCGTATCAACGATATCAAGGAGTTGGAGGAGTCTATGCGCTCTA AGGGTCTCGAGCCTAACCAGGAGGGCTTCGAGGATTACCTCAATGCTTTCCGCCAGGGTTGCCCCCCTCACGCTG GCGGTGGTCTTGGTCTAAACCGTATTGTTATGTTCTTCCTTGGCTTGCCTAACGTCCGTTTGGCTTCGCTGTTCC CCCGTGACCCTCAGCGTCTGCGTCCTTGA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences