© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2660.t1 |
| Gene name | |
| Location | scaffold_03:621814..622841 |
| Strand | + |
| Gene length (bp) | 1027 |
| Transcript length (bp) | 894 |
| Coding sequence length (bp) | 894 |
| Protein length (aa) | 298 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00170 | bZIP_1 | bZIP transcription factor | 9.2E-09 | 112 | 164 |
| PF07716 | bZIP_2 | Basic region leucine zipper | 3.9E-05 | 108 | 160 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0003700 | DNA-binding transcription factor activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0050789 | regulation of biological process | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0065007 | biological regulation | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050794 | regulation of cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| bZIP |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 381.05 | 228.49 | 533.60 |
| 5d_25C | Five days - 25 degrees Celsius | 619.72 | 360.81 | 878.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 540.69 | 313.29 | 768.09 |
| 10d_25C | Ten days - 25 degrees Celsius | 733.38 | 423.52 | 1043.24 |
| 7d_15C | Seven days - 15 degrees Celsius | 328.83 | 193.82 | 463.84 |
| 7d_30C | Seven days - 30 degrees Celsius | 674.41 | 385.62 | 963.20 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.021417 | yes |
| 3d_25C | 7d_25C | 0.124307 | no |
| 3d_25C | 7d_15C | 0.589917 | no |
| 3d_25C | 7d_30C | 0.008807 | yes |
| 3d_25C | 10d_25C | 0.002761 | yes |
| 5d_25C | 7d_25C | 0.649520 | no |
| 5d_25C | 7d_15C | 0.001804 | yes |
| 5d_25C | 7d_30C | 0.800488 | no |
| 5d_25C | 10d_25C | 0.551891 | no |
| 7d_25C | 7d_15C | 0.022435 | yes |
| 7d_25C | 7d_30C | 0.416545 | no |
| 7d_25C | 10d_25C | 0.213381 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.802720 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2660.t1 MDYSFYDPRSQPSGFSLYGLPTPDQPHAQPDTFAPVNNYQNFPGYIPPFPADPSFVPPPHSPPDSVKHSASSDAA NTQHTRPTSFDGDETQFADPALGRSSSEEKDSAPAQSKRKAQNRAAQRAFRERKEQHVRDLEDKVNSLEQASNTL QADNERLKRELARYTTENEILRATSQQANRGHVGANENPEPTVTGPMKYSPTDFHTTFMADSPGTSRNLHHRLTV CPITGEKLLDAGATWDLIQKHELFERGQLDIGDVTERLKGMSQCDGQGPAFKESQVRRAIEESAAAGRDELI* |
| Coding | >Pro_DTO377G3_2|g2660.t1 ATGGATTACTCTTTCTATGATCCCCGATCACAGCCCTCGGGCTTCTCGCTCTACGGGCTGCCTACCCCCGACCAA CCCCATGCCCAACCAGATACATTCGCCCCTGTGAATAATTACCAAAACTTCCCTGGCTATATCCCCCCATTCCCT GCCGACCCCTCCTTTGTCCCGCCACCGCATTCACCGCCAGACTCGGTCAAGCACTCTGCTTCCAGCGATGCCGCC AACACTCAGCACACACGCCCCACCTCATTCGACGGCGATGAAACTCAATTCGCCGACCCAGCTTTAGGGAGGAGT AGCAGCGAGGAAAAGGACTCAGCGCCCGCACAAAGCAAGCGCAAGGCACAAAACCGAGCAGCTCAGCGGGCATTC CGGGAGCGCAAGGAACAGCACGTCCGCGACCTCGAAGACAAAGTAAATAGCCTCGAACAAGCCTCCAACACATTA CAAGCCGACAACGAGCGCCTCAAGCGCGAGCTGGCCCGGTACACAACCGAGAATGAGATCTTGCGCGCGACATCA CAACAGGCCAACCGCGGACATGTCGGCGCAAACGAGAATCCTGAACCAACGGTTACGGGCCCAATGAAGTACTCC CCAACAGACTTCCATACCACGTTTATGGCAGACAGCCCTGGCACGTCTCGAAACCTGCACCACCGTCTCACCGTG TGTCCGATTACCGGTGAGAAGCTGCTGGATGCGGGTGCTACGTGGGACCTTATTCAGAAACATGAACTGTTTGAG CGCGGCCAACTTGATATCGGTGATGTCACGGAGCGTTTGAAGGGTATGTCGCAGTGTGACGGACAGGGCCCTGCT TTTAAAGAGAGCCAGGTGCGCCGGGCTATTGAGGAAAGTGCGGCTGCTGGTCGTGATGAGTTGATTTGA |
| Transcript | >Pro_DTO377G3_2|g2660.t1 ATGGATTACTCTTTCTATGATCCCCGATCACAGCCCTCGGGCTTCTCGCTCTACGGGCTGCCTACCCCCGACCAA CCCCATGCCCAACCAGATACATTCGCCCCTGTGAATAATTACCAAAACTTCCCTGGCTATATCCCCCCATTCCCT GCCGACCCCTCCTTTGTCCCGCCACCGCATTCACCGCCAGACTCGGTCAAGCACTCTGCTTCCAGCGATGCCGCC AACACTCAGCACACACGCCCCACCTCATTCGACGGCGATGAAACTCAATTCGCCGACCCAGCTTTAGGGAGGAGT AGCAGCGAGGAAAAGGACTCAGCGCCCGCACAAAGCAAGCGCAAGGCACAAAACCGAGCAGCTCAGCGGGCATTC CGGGAGCGCAAGGAACAGCACGTCCGCGACCTCGAAGACAAAGTAAATAGCCTCGAACAAGCCTCCAACACATTA CAAGCCGACAACGAGCGCCTCAAGCGCGAGCTGGCCCGGTACACAACCGAGAATGAGATCTTGCGCGCGACATCA CAACAGGCCAACCGCGGACATGTCGGCGCAAACGAGAATCCTGAACCAACGGTTACGGGCCCAATGAAGTACTCC CCAACAGACTTCCATACCACGTTTATGGCAGACAGCCCTGGCACGTCTCGAAACCTGCACCACCGTCTCACCGTG TGTCCGATTACCGGTGAGAAGCTGCTGGATGCGGGTGCTACGTGGGACCTTATTCAGAAACATGAACTGTTTGAG CGCGGCCAACTTGATATCGGTGATGTCACGGAGCGTTTGAAGGGTATGTCGCAGTGTGACGGACAGGGCCCTGCT TTTAAAGAGAGCCAGGTGCGCCGGGCTATTGAGGAAAGTGCGGCTGCTGGTCGTGATGAGTTGATTTGA |
| Gene | >Pro_DTO377G3_2|g2660.t1 ATGGATTACTCTTTCTATGATCCCCGATCACAGCCCTCGGGCTTCTCGCTCTACGGGCTGCCTACCCCCGACCAA CCCCATGCCCAACCAGATACATTCGCCCCTGTGGTAGGTTCTTTGTTCCCCCCTAACCGTCAAGAACTTGTCGCT AATAGACCAGAATAATTACCAAAACTTCCCTGGCTATATCCCCCCATTCCCTGCCGACCCCTCCTTTGTCCCGCC ACCGCATTCACCGCCAGACTCGGTCAAGCACTCTGCTTCCAGCGATGCCGCCAACACTCAGCACACACGCCCCAC CTCATTCGACGGCGATGAAACTCAATTCGCCGACCCAGCTTTAGGGAGGAGTAGCAGCGAGGAAAAGGACTCAGC GCCCGCACAAAGCAAGCGCAAGGCACAAAACCGAGCAGCGTATGTGACATATCCAACCCACGTGTCTAGAGACAT CTATCCCCGTAAAGCAAACACTAACAGGTTCCACTCGTTACACAGTCAGCGGGCATTCCGGGAGCGCAAGGAACA GCACGTCCGCGACCTCGAAGACAAAGTAAATAGCCTCGAACAAGCCTCCAACACATTACAAGCCGACAACGAGCG CCTCAAGCGCGAGCTGGCCCGGTACACAACCGAGAATGAGATCTTGCGCGCGACATCACAACAGGCCAACCGCGG ACATGTCGGCGCAAACGAGAATCCTGAACCAACGGTTACGGGCCCAATGAAGTACTCCCCAACAGACTTCCATAC CACGTTTATGGCAGACAGCCCTGGCACGTCTCGAAACCTGCACCACCGTCTCACCGTGTGTCCGATTACCGGTGA GAAGCTGCTGGATGCGGGTGCTACGTGGGACCTTATTCAGAAACATGAACTGTTTGAGCGCGGCCAACTTGATAT CGGTGATGTCACGGAGCGTTTGAAGGGTATGTCGCAGTGTGACGGACAGGGCCCTGCTTTTAAAGAGAGCCAGGT GCGCCGGGCTATTGAGGAAAGTGCGGCTGCTGGTCGTGATGAGTTGATTTGA |