Protein ID | Pro_DTO377G3_2|g2655.t1 |
Gene name | |
Location | scaffold_03:599202..601921 |
Strand | - |
Gene length (bp) | 2719 |
Transcript length (bp) | 2661 |
Coding sequence length (bp) | 2661 |
Protein length (aa) | 887 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13639 | zf-RING_2 | Ring finger domain | 4.5E-12 | 743 | 787 |
PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 1.8E-08 | 756 | 787 |
PF17123 | zf-RING_11 | RING-like zinc finger | 5.9E-09 | 743 | 772 |
PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 5.3E-08 | 743 | 786 |
PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 5.8E-08 | 744 | 786 |
PF02225 | PA | PA domain | 1.3E-07 | 217 | 290 |
PF14634 | zf-RING_5 | zinc-RING finger domain | 5.2E-07 | 743 | 787 |
GO Term | Description | Terminal node |
---|---|---|
GO:0046872 | metal ion binding | Yes |
GO:0008270 | zinc ion binding | Yes |
GO:0046914 | transition metal ion binding | No |
GO:0005488 | binding | No |
GO:0043167 | ion binding | No |
GO:0043169 | cation binding | No |
GO:0003674 | molecular_function | No |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
2 | 615 | 637 | 22 |
Orthofinder run ID | 2 |
Orthogroup | 5797 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g2655.t1 MRPPRLLIVLFCLIFFPILLTFFSALTSPDVAPNTLAGQKTGLRALFSFNIPSSLFPPSAIISLTDDNSTFFLAR PAAFGSLLPTKGLSGQLWVGSGFGEGGLAGGVEGELGCSDIPGWGESKNHKKQDKTSRAAEQSSGISGGSTVNDQ SSNRPRSVSQVDTTQNDRDSTTPPLTNDGTDDHLHHPLPESGSSNPGMNQKYGDYVQNKPPAHADIQSLQETAEI QGKVVLLSRGGCGFLEKAKWAQRRGGIALIVGDDTRGGNLVTMYARGDTSNVTIPALFTSHTTAHLLSSLVPGHT GGTAGLEDVVKSSQAKLAGQAEADKERVATTTATTTFPSPTASSHSTTKEKPAPSSHSEGGVFRAIGAFLGLCDK NGGSRRLEDSRRPPSSGNIDWINLGSRNEKEAPSSAWRRSTDLNHHGRAKVDDTFDKHKADMSTEGLEDDDFVIG VQDWRDPDLMPPKSSTHPTTSIPATGKDTSKTASADKDASSSPNGLQGGSITPGSGEYQSFEKSSAGSHDTHRKG SEKETIGTHGKSRSSSTKGWFSSHFGWGDDTQQDPQPSSSPSLQKSIATNEQKQNNAPTSSRLSAESSEHEGLWV TMTPTSMSTSPFFDTLLVLVVSPLLTLTVVYALLLIRSRIRRRRWRAPKSVIERLPVRTYHTIATTSSSSSNSTR PSSPSPLSPTSPLLGTDSRPSASRSNRSRSQTFSGTILDSSVVPKEEKCNLQGGSTLWRRKYTGRQVECVVCLEE YIDGQSRVMSLPCGHEFHVECITPWLTTRRRTCPICKGDVVRSLAHCQSGDSRGHREQSLDDVRSVQSISRGSAS SAPVPIEGVNDDASDTEQNAGLPGDHANSAPQSSWRNLATLSFSALSGDTIWHQARADRNR* |
Coding | >Pro_DTO377G3_2|g2655.t1 ATGCGACCGCCACGCCTGCTCATCGTACTCTTCTGCCTTATCTTCTTCCCGATCCTCCTCACCTTCTTTTCCGCG CTTACATCACCCGATGTAGCTCCTAATACTCTCGCTGGTCAGAAAACTGGGCTGCGAGCTTTGTTTTCTTTTAAC ATACCATCGTCCCTTTTTCCCCCGTCGGCTATTATCAGTCTCACCGATGACAACTCGACCTTCTTTCTCGCCCGA CCAGCGGCATTTGGCTCCCTACTGCCAACCAAAGGCCTTAGCGGTCAGCTATGGGTGGGAAGTGGCTTTGGTGAG GGGGGATTAGCTGGTGGTGTGGAAGGAGAACTGGGCTGCTCCGATATCCCCGGCTGGGGTGAGAGCAAAAATCAT AAGAAACAAGATAAAACCTCTAGAGCCGCGGAGCAGAGTTCCGGGATCTCCGGGGGAAGTACAGTGAATGATCAA TCCTCAAACCGCCCGCGGTCGGTGTCGCAGGTCGATACTACGCAGAACGATAGAGATTCAACTACCCCGCCTTTG ACGAACGATGGCACTGACGACCATCTACACCATCCACTCCCTGAATCTGGTTCTTCTAACCCCGGGATGAATCAG AAATATGGAGATTACGTCCAAAATAAGCCGCCTGCGCATGCCGACATCCAATCGCTACAGGAAACTGCCGAAATC CAGGGTAAAGTAGTGCTGTTGAGTCGGGGTGGCTGTGGGTTTTTGGAGAAGGCCAAATGGGCACAACGACGAGGA GGGATTGCTTTGATCGTCGGCGATGATACCCGGGGTGGCAACTTGGTCACTATGTACGCACGAGGCGATACATCG AACGTCACGATCCCGGCCTTGTTCACATCTCACACTACTGCTCATCTTCTATCGTCATTGGTTCCTGGGCATACA GGTGGAACTGCCGGTTTAGAAGATGTAGTAAAATCATCACAAGCGAAGCTGGCAGGACAAGCTGAAGCCGATAAA GAACGGGTGGCAACTACTACCGCAACAACAACTTTTCCTAGTCCGACTGCCAGCAGCCATTCGACAACCAAGGAG AAACCTGCACCCTCTTCTCACTCGGAAGGCGGGGTTTTCCGTGCAATTGGTGCATTCTTGGGATTGTGCGATAAG AACGGAGGTTCGCGACGTCTAGAAGACAGCCGACGTCCGCCTAGCAGCGGCAACATTGATTGGATCAACCTAGGC TCACGGAATGAAAAAGAAGCCCCGTCGAGCGCTTGGAGGAGATCAACAGATCTCAATCATCATGGTCGGGCCAAG GTAGACGACACATTCGACAAGCACAAGGCCGACATGTCCACTGAAGGTCTTGAGGATGATGACTTTGTCATCGGG GTTCAGGACTGGAGAGATCCTGACTTGATGCCCCCTAAGAGTAGCACCCATCCGACAACTAGCATCCCTGCAACT GGCAAGGATACCTCCAAGACTGCCAGTGCGGATAAAGATGCCTCTTCCTCGCCCAACGGTCTTCAGGGTGGTAGC ATCACACCAGGAAGTGGAGAATACCAGAGCTTCGAGAAATCCAGTGCTGGTTCTCATGACACGCACCGCAAGGGG TCTGAGAAAGAAACCATCGGAACTCATGGGAAGTCCAGATCTTCTTCCACGAAGGGCTGGTTCTCGAGTCACTTT GGATGGGGAGATGATACTCAGCAAGACCCTCAGCCTTCTTCGTCGCCTTCACTCCAGAAAAGTATTGCAACCAAC GAGCAGAAACAAAACAACGCTCCCACATCAAGCCGTCTCAGCGCGGAGTCTTCCGAACACGAAGGTCTTTGGGTT ACAATGACACCTACCAGCATGTCCACCAGCCCCTTTTTCGATACTCTATTGGTACTTGTCGTCAGCCCTTTGCTC ACACTGACGGTGGTTTATGCCCTTTTGCTGATCCGGTCTCGAATCCGCCGTCGTCGCTGGCGTGCCCCGAAGTCG GTTATCGAACGACTTCCTGTCCGAACCTACCACACAATTGCCACCACTTCGTCCTCGTCTTCCAACTCAACGCGC CCCTCCAGTCCCAGTCCTCTATCCCCGACTTCTCCACTCCTTGGCACAGATAGCCGACCAAGCGCATCCCGATCC AATAGATCACGTTCACAAACATTCTCGGGCACTATACTAGACTCATCTGTCGTACCCAAAGAAGAGAAGTGCAAC CTGCAAGGTGGATCTACCTTGTGGCGACGGAAGTACACAGGAAGGCAGGTGGAGTGTGTCGTATGTCTTGAGGAA TACATCGATGGTCAGAGCCGGGTCATGAGTTTGCCATGTGGCCATGAATTCCATGTGGAATGCATTACCCCCTGG TTGACCACTCGTCGACGAACTTGTCCAATCTGTAAGGGCGATGTTGTCCGTTCGTTGGCTCATTGTCAATCCGGC GATTCTCGGGGTCATCGTGAGCAGTCTCTTGATGATGTTCGCAGCGTCCAGTCAATCTCTAGAGGCAGCGCATCT TCCGCTCCAGTACCAATTGAGGGCGTCAATGACGATGCTTCAGATACGGAACAAAATGCAGGTCTACCTGGCGAC CATGCAAATTCTGCCCCACAGTCAAGCTGGCGAAACCTCGCTACCCTTAGCTTTTCTGCTCTGAGTGGCGACACC ATATGGCACCAGGCTCGCGCAGACCGCAATCGCTAA |
Transcript | >Pro_DTO377G3_2|g2655.t1 ATGCGACCGCCACGCCTGCTCATCGTACTCTTCTGCCTTATCTTCTTCCCGATCCTCCTCACCTTCTTTTCCGCG CTTACATCACCCGATGTAGCTCCTAATACTCTCGCTGGTCAGAAAACTGGGCTGCGAGCTTTGTTTTCTTTTAAC ATACCATCGTCCCTTTTTCCCCCGTCGGCTATTATCAGTCTCACCGATGACAACTCGACCTTCTTTCTCGCCCGA CCAGCGGCATTTGGCTCCCTACTGCCAACCAAAGGCCTTAGCGGTCAGCTATGGGTGGGAAGTGGCTTTGGTGAG GGGGGATTAGCTGGTGGTGTGGAAGGAGAACTGGGCTGCTCCGATATCCCCGGCTGGGGTGAGAGCAAAAATCAT AAGAAACAAGATAAAACCTCTAGAGCCGCGGAGCAGAGTTCCGGGATCTCCGGGGGAAGTACAGTGAATGATCAA TCCTCAAACCGCCCGCGGTCGGTGTCGCAGGTCGATACTACGCAGAACGATAGAGATTCAACTACCCCGCCTTTG ACGAACGATGGCACTGACGACCATCTACACCATCCACTCCCTGAATCTGGTTCTTCTAACCCCGGGATGAATCAG AAATATGGAGATTACGTCCAAAATAAGCCGCCTGCGCATGCCGACATCCAATCGCTACAGGAAACTGCCGAAATC CAGGGTAAAGTAGTGCTGTTGAGTCGGGGTGGCTGTGGGTTTTTGGAGAAGGCCAAATGGGCACAACGACGAGGA GGGATTGCTTTGATCGTCGGCGATGATACCCGGGGTGGCAACTTGGTCACTATGTACGCACGAGGCGATACATCG AACGTCACGATCCCGGCCTTGTTCACATCTCACACTACTGCTCATCTTCTATCGTCATTGGTTCCTGGGCATACA GGTGGAACTGCCGGTTTAGAAGATGTAGTAAAATCATCACAAGCGAAGCTGGCAGGACAAGCTGAAGCCGATAAA GAACGGGTGGCAACTACTACCGCAACAACAACTTTTCCTAGTCCGACTGCCAGCAGCCATTCGACAACCAAGGAG AAACCTGCACCCTCTTCTCACTCGGAAGGCGGGGTTTTCCGTGCAATTGGTGCATTCTTGGGATTGTGCGATAAG AACGGAGGTTCGCGACGTCTAGAAGACAGCCGACGTCCGCCTAGCAGCGGCAACATTGATTGGATCAACCTAGGC TCACGGAATGAAAAAGAAGCCCCGTCGAGCGCTTGGAGGAGATCAACAGATCTCAATCATCATGGTCGGGCCAAG GTAGACGACACATTCGACAAGCACAAGGCCGACATGTCCACTGAAGGTCTTGAGGATGATGACTTTGTCATCGGG GTTCAGGACTGGAGAGATCCTGACTTGATGCCCCCTAAGAGTAGCACCCATCCGACAACTAGCATCCCTGCAACT GGCAAGGATACCTCCAAGACTGCCAGTGCGGATAAAGATGCCTCTTCCTCGCCCAACGGTCTTCAGGGTGGTAGC ATCACACCAGGAAGTGGAGAATACCAGAGCTTCGAGAAATCCAGTGCTGGTTCTCATGACACGCACCGCAAGGGG TCTGAGAAAGAAACCATCGGAACTCATGGGAAGTCCAGATCTTCTTCCACGAAGGGCTGGTTCTCGAGTCACTTT GGATGGGGAGATGATACTCAGCAAGACCCTCAGCCTTCTTCGTCGCCTTCACTCCAGAAAAGTATTGCAACCAAC GAGCAGAAACAAAACAACGCTCCCACATCAAGCCGTCTCAGCGCGGAGTCTTCCGAACACGAAGGTCTTTGGGTT ACAATGACACCTACCAGCATGTCCACCAGCCCCTTTTTCGATACTCTATTGGTACTTGTCGTCAGCCCTTTGCTC ACACTGACGGTGGTTTATGCCCTTTTGCTGATCCGGTCTCGAATCCGCCGTCGTCGCTGGCGTGCCCCGAAGTCG GTTATCGAACGACTTCCTGTCCGAACCTACCACACAATTGCCACCACTTCGTCCTCGTCTTCCAACTCAACGCGC CCCTCCAGTCCCAGTCCTCTATCCCCGACTTCTCCACTCCTTGGCACAGATAGCCGACCAAGCGCATCCCGATCC AATAGATCACGTTCACAAACATTCTCGGGCACTATACTAGACTCATCTGTCGTACCCAAAGAAGAGAAGTGCAAC CTGCAAGGTGGATCTACCTTGTGGCGACGGAAGTACACAGGAAGGCAGGTGGAGTGTGTCGTATGTCTTGAGGAA TACATCGATGGTCAGAGCCGGGTCATGAGTTTGCCATGTGGCCATGAATTCCATGTGGAATGCATTACCCCCTGG TTGACCACTCGTCGACGAACTTGTCCAATCTGTAAGGGCGATGTTGTCCGTTCGTTGGCTCATTGTCAATCCGGC GATTCTCGGGGTCATCGTGAGCAGTCTCTTGATGATGTTCGCAGCGTCCAGTCAATCTCTAGAGGCAGCGCATCT TCCGCTCCAGTACCAATTGAGGGCGTCAATGACGATGCTTCAGATACGGAACAAAATGCAGGTCTACCTGGCGAC CATGCAAATTCTGCCCCACAGTCAAGCTGGCGAAACCTCGCTACCCTTAGCTTTTCTGCTCTGAGTGGCGACACC ATATGGCACCAGGCTCGCGCAGACCGCAATCGCTAA |
Gene | >Pro_DTO377G3_2|g2655.t1 ATGCGACCGCCACGCCTGCTCATCGTACTCTTCTGCCTTATCTTCTTCCCGATCCTCCTCACCTTCTTTTCCGCG CTTACATCACCCGATGTAGCTCCTAATACTCTCGCTGGTCAGAAAACTGGGCTGCGAGCTTTGTTTTCTTTTAAC ATACCATCGTCCCTTTTTCCCCCGTCGGCTATTATCAGTCTCACCGATGACAACTCGACCTTCTTTCTCGCCCGA CCAGCGGCATTTGGCTCCCTACTGCCAACCAAAGGCCTTAGCGGTCAGCTATGGGTGGGAAGTGGCTTTGGTGAG GGGGGATTAGCTGGTGGTGTGGAAGGAGAACTGGGCTGCTCCGATATCCCCGGCTGGGGTGAGAGCAAAAATCAT AAGAAACAAGATAAAACCTCTAGAGCCGCGGAGCAGAGTTCCGGGATCTCCGGGGGAAGTACAGTGAATGATCAA TCCTCAAACCGCCCGCGGTCGGTGTCGCAGGTCGATACTACGCAGAACGATAGAGATTCAACTACCCCGCCTTTG ACGAACGATGGCACTGACGACCATCTACACCATCCACTCCCTGAATCTGGTTCTTCTAACCCCGGGATGAATCAG AAATATGGAGATTACGTCCAAAATAAGCCGCCTGCGCATGCCGACATCCAATCGCTACAGGAAACTGCCGAAATC CAGGGTAAAGTAGTGCTGTTGAGTCGGGGTGGCTGTGGGTTTTTGGAGAAGGCCAAATGGGCACAACGACGAGGA GGGATTGCTTTGATCGTCGGCGATGATACCCGGGGTGGCAACTTGGTCACTATGTACGCACGAGGCGATACATCG AACGTCACGATCCCGGCCTTGTTCACATCTCACACTACTGCTCATCTTCTATCGTCATTGGTTCCTGGGCATACA GGTGGAACTGCCGGTTTAGAAGATGTAGTAAAATCATCACAAGCGAAGCTGGCAGGACAAGCTGAAGCCGATAAA GAACGGGTGGCAACTACTACCGCAACAACAACTTTTCCTAGTCCGACTGCCAGCAGCCATTCGACAACCAAGGAG AAACCTGCACCCTCTTCTCACTCGGAAGGCGGGGTTTTCCGTGCAATTGGTGCATTCTTGGGATTGTGCGATAAG AACGGAGGTTCGCGACGTCTAGAAGACAGCCGACGTCCGCCTAGCAGCGGCAACATTGATTGGATCAACCTAGGC TCACGGAATGAAAAAGAAGCCCCGTCGAGCGCTTGGAGGAGATCAACAGATCTCAATCATCATGGTCGGGCCAAG GTAGACGACACATTCGACAAGCACAAGGCCGACATGTCCACTGAAGGTCTTGAGGATGATGACTTTGTCATCGGG GTTCAGGACTGGAGAGATCCTGACTTGATGCCCCCTAAGAGTAGCACCCATCCGACAACTAGCATCCCTGCAACT GGCAAGGATACCTCCAAGACTGCCAGTGCGGATAAAGATGCCTCTTCCTCGCCCAACGGTCTTCAGGGTGGTAGC ATCACACCAGGAAGTGGAGAATACCAGAGCTTCGAGAAATCCAGTGCTGGTTCTCATGACACGCACCGCAAGGGG TCTGAGAAAGAAACCATCGGAACTCATGGGAAGTCCAGATCTTCTTCCACGAAGGGCTGGTTCTCGAGTCACTTT GGATGGGGAGATGATACTCAGCAAGACCCTCAGCCTTCTTCGTCGCCTTCACTCCAGAAAAGTATTGCAACCAAC GAGCAGAAACAAAACAACGCTCCCACATCAAGCCGTCTCAGCGCGGAGTCTTCCGAACACGAAGGTCTTTGGGTT ACAATGACACCTACCAGCATGTCCACCAGCCCCTTTTTCGATACTCTATTGGTACTTGTCGTCAGCCCTTTGCTC ACACTGACGGTGGTTTATGCCCTTTTGCTGATCCGGTCTCGAATCCGCCGTCGTCGCTGGCGTGCCCCGAAGTCG GTTATCGAACGACTTCCTGTCCGAACCTACCACACAATTGCCACCACTTCGTCCTCGTCTTCCAACTCAACGCGC CCCTCCAGTCCCAGTCCTCTATCCCCGACTTCTCCACTCCTTGGCACAGATAGCCGACCAAGCGCATCCCGATCC AATAGATCACGTTCACAAACATTCTCGGGCACTATACTAGACTCATCTGTCGTACCCAAAGAAGAGAAGTGCAAC CTGCAAGGTGGATCTACCTTGTGGCGACGGAAGTACACAGGAAGGCAGGTGGAGTGTGTCGTATGTCTTGAGGAA TACATCGATGGTCAGAGCCGGGTCATGAGTTTGCCATGTGGCCATGAATTCCATGTGGAATGCATGTAAGTGACG TGAATTTTTTTGTCTTGGTTGCGAAGTTTTACTAACCTCTTTTCTCAGTACCCCCTGGTTGACCACTCGTCGACG AACTTGTCCAATCTGTAAGGGCGATGTTGTCCGTTCGTTGGCTCATTGTCAATCCGGCGATTCTCGGGGTCATCG TGAGCAGTCTCTTGATGATGTTCGCAGCGTCCAGTCAATCTCTAGAGGCAGCGCATCTTCCGCTCCAGTACCAAT TGAGGGCGTCAATGACGATGCTTCAGATACGGAACAAAATGCAGGTCTACCTGGCGACCATGCAAATTCTGCCCC ACAGTCAAGCTGGCGAAACCTCGCTACCCTTAGCTTTTCTGCTCTGAGTGGCGACACCATATGGCACCAGGCTCG CGCAGACCGCAATCGCTAA |