© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2650.t1 |
| Gene name | |
| Location | scaffold_03:587978..588624 |
| Strand | + |
| Gene length (bp) | 646 |
| Transcript length (bp) | 339 |
| Coding sequence length (bp) | 339 |
| Protein length (aa) | 113 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10247 | Romo1 | Reactive mitochondrial oxygen species modulator 1 | 9.5E-28 | 18 | 83 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 25 | 47 | 22 |
| 2 | 59 | 81 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 311.73 | 178.18 | 445.28 |
| 5d_25C | Five days - 25 degrees Celsius | 326.00 | 186.46 | 465.54 |
| 7d_25C | Seven days - 25 degrees Celsius | 320.82 | 184.09 | 457.55 |
| 10d_25C | Ten days - 25 degrees Celsius | 429.00 | 257.41 | 600.58 |
| 7d_15C | Seven days - 15 degrees Celsius | 326.66 | 188.41 | 464.91 |
| 7d_30C | Seven days - 30 degrees Celsius | 323.25 | 184.85 | 461.65 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.904691 | no |
| 3d_25C | 7d_25C | 0.939159 | no |
| 3d_25C | 7d_15C | 0.900861 | no |
| 3d_25C | 7d_30C | 0.922915 | no |
| 3d_25C | 10d_25C | 0.181913 | no |
| 5d_25C | 7d_25C | 0.968574 | no |
| 5d_25C | 7d_15C | 0.996134 | no |
| 5d_25C | 7d_30C | 0.983643 | no |
| 5d_25C | 10d_25C | 0.269079 | no |
| 7d_25C | 7d_15C | 0.964926 | no |
| 7d_25C | 7d_30C | 0.985642 | no |
| 7d_25C | 10d_25C | 0.232457 | no |
| 7d_15C | 7d_30C | 0.978911 | no |
| 7d_15C | 10d_25C | 0.268759 | no |
| 7d_30C | 10d_25C | 0.245676 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2650.t1 MPVVAGPPAQAGPGGAPSTLEKMKMGCLMGSTVGGIMGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGLFM SIGSVIRSEGPHNDAWLRARGPPMMLPRQSPLRPMRQ* |
| Coding | >Pro_DTO377G3_2|g2650.t1 ATGCCTGTGGTTGCCGGACCTCCCGCTCAAGCGGGCCCAGGGGGTGCTCCCTCAACTTTGGAGAAGATGAAAATG GGCTGCCTGATGGGTTCCACTGTTGGTGGTATCATGGGCTTCATTATTGGAACTGTGACGATCTTCCAATATGGC GCTGGCCCCAACGGTGTTATGCGGACTCTCGGCAAGTATATGCTAGGTTCAGGCGCCACTTTCGGACTCTTCATG TCCATCGGTAGCGTCATCCGCTCTGAAGGACCTCACAACGATGCCTGGCTTCGTGCTCGGGGCCCCCCAATGATG CTCCCCCGACAGAGTCCCCTCCGGCCAATGCGCCAGTGA |
| Transcript | >Pro_DTO377G3_2|g2650.t1 ATGCCTGTGGTTGCCGGACCTCCCGCTCAAGCGGGCCCAGGGGGTGCTCCCTCAACTTTGGAGAAGATGAAAATG GGCTGCCTGATGGGTTCCACTGTTGGTGGTATCATGGGCTTCATTATTGGAACTGTGACGATCTTCCAATATGGC GCTGGCCCCAACGGTGTTATGCGGACTCTCGGCAAGTATATGCTAGGTTCAGGCGCCACTTTCGGACTCTTCATG TCCATCGGTAGCGTCATCCGCTCTGAAGGACCTCACAACGATGCCTGGCTTCGTGCTCGGGGCCCCCCAATGATG CTCCCCCGACAGAGTCCCCTCCGGCCAATGCGCCAGTGA |
| Gene | >Pro_DTO377G3_2|g2650.t1 ATGCCTGTGGTTGCCGGACCTCCCGCTCAAGCGGGCCCAGGGGGTGCTCCCTCAACTTTGGAGAAGAGTATGTCA TCTACAACCTAGTGATATAGATCACCCTCCGCGTGGTGTCCTTTTTCCTTGGGTACTATATATATATGGTGAACC AAGTATGCTGACATATTCCTAGTGAAAATGGGCTGCCTGATGGGTTCCAGTACGTGATCACAAAACAACCGAGCC TTGTTCACCAAGAGCTTTTGCTAACATAGCTCCCCTTTCAGCTGTTGGTGGTATCATGGGCTTCATTATTGGTTG GTCCCACTTAGTCCCCGAATGAAGGTGTGCATGATAAGCTAACTGAAACAGGAACTGTGACGATCTTCCAATATG GCGCTGGCCCCAACGGTGTTATGCGGACTCTCGGCAAGTATATGCTAGGTTCAGGCGCCACTTTCGGGTATGGTT GACTCCTTGAAAGCTTTGAAGTTATACTACTTTGGTTGAGAATCACTGGCTAATCAACTTCCCTTCAAATAGACT CTTCATGTCCATCGGTAGCGTCATCCGCTCTGAAGGACCTCACAACGATGCCTGGCTTCGTGCTCGGGGCCCCCC AATGATGCTCCCCCGACAGAGTCCCCTCCGGCCAATGCGCCAGTGA |