© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g2648.t1 |
| Gene name | |
| Location | scaffold_03:582911..583651 |
| Strand | + |
| Gene length (bp) | 740 |
| Transcript length (bp) | 663 |
| Coding sequence length (bp) | 663 |
| Protein length (aa) | 221 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12328 | Rpp20 | Rpp20 subunit of nuclear RNase MRP and P | 4.6E-46 | 47 | 216 |
| PF01918 | Alba | Alba | 3.0E-17 | 49 | 141 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005655 | nucleolar ribonuclease P complex | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0006396 | RNA processing | Yes |
| GO:0000172 | ribonuclease MRP complex | Yes |
| GO:0001682 | tRNA 5'-leader removal | Yes |
| GO:0005488 | binding | No |
| GO:0008033 | tRNA processing | No |
| GO:0008152 | metabolic process | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0030677 | ribonuclease P complex | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0030681 | multimeric ribonuclease P complex | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:1902494 | catalytic complex | No |
| GO:0099116 | tRNA 5'-end processing | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0000966 | RNA 5'-end processing | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1902555 | endoribonuclease complex | No |
| GO:0003674 | molecular_function | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | No |
| GO:0034470 | ncRNA processing | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 31.16 | 13.73 | 48.60 |
| 5d_25C | Five days - 25 degrees Celsius | 31.63 | 13.82 | 49.43 |
| 7d_25C | Seven days - 25 degrees Celsius | 34.86 | 15.70 | 54.01 |
| 10d_25C | Ten days - 25 degrees Celsius | 31.89 | 13.96 | 49.82 |
| 7d_15C | Seven days - 15 degrees Celsius | 28.14 | 11.88 | 44.39 |
| 7d_30C | Seven days - 30 degrees Celsius | 30.64 | 13.22 | 48.05 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.977110 | no |
| 3d_25C | 7d_25C | 0.784544 | no |
| 3d_25C | 7d_15C | 0.817001 | no |
| 3d_25C | 7d_30C | 0.973648 | no |
| 3d_25C | 10d_25C | 0.963361 | no |
| 5d_25C | 7d_25C | 0.819908 | no |
| 5d_25C | 7d_15C | 0.790276 | no |
| 5d_25C | 7d_30C | 0.946168 | no |
| 5d_25C | 10d_25C | 0.986662 | no |
| 7d_25C | 7d_15C | 0.570394 | no |
| 7d_25C | 7d_30C | 0.749668 | no |
| 7d_25C | 10d_25C | 0.836687 | no |
| 7d_15C | 7d_30C | 0.855330 | no |
| 7d_15C | 10d_25C | 0.776573 | no |
| 7d_30C | 10d_25C | 0.933265 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2648.t1 MAKGLLESKLQFEKKNKDLIRLPKHAKVEKRPIPHAPVASPYAGALVPKIVYVSKTTPFMSAVKRVQKLLLQAEK RATANINLEDTRKNDKQILEELSKIPEKREKVFVKATGRAIEKALNVAKWFEEKETEYTVCVNTGSVVVVDDIVE DEEIKAKEEQKRQRQQEQTPTDQGDAASKPESKSAAKKRKRQAAAVEDDAELPESRIRWIKMVEVAVSLK* |
| Coding | >Pro_DTO377G3_2|g2648.t1 ATGGCAAAGGGGCTATTGGAAAGCAAGCTCCAGTTTGAGAAAAAGAACAAAGACCTTATTAGACTCCCAAAACAT GCCAAAGTCGAGAAGCGTCCTATACCTCATGCCCCAGTCGCATCCCCATATGCTGGCGCATTAGTACCTAAGATT GTCTATGTGTCTAAGACTACGCCATTCATGAGCGCCGTCAAGCGCGTCCAGAAACTCCTGCTGCAGGCCGAGAAG CGCGCCACAGCAAACATCAATCTCGAGGATACGCGCAAGAACGATAAACAGATACTCGAGGAGTTGTCGAAGATA CCAGAGAAGCGAGAGAAAGTTTTTGTGAAGGCGACAGGGCGGGCTATTGAGAAGGCGCTGAACGTAGCCAAATGG TTCGAGGAAAAGGAAACCGAGTACACAGTCTGTGTCAATACGGGGAGCGTGGTTGTCGTGGATGATATCGTCGAG GACGAAGAAATTAAAGCAAAAGAAGAACAGAAACGGCAACGGCAGCAAGAGCAAACCCCAACTGACCAGGGAGAT GCGGCTTCTAAGCCGGAATCCAAGTCAGCCGCAAAGAAGAGGAAACGTCAGGCCGCCGCGGTAGAGGATGATGCC GAGCTCCCCGAGAGCCGGATAAGGTGGATCAAAATGGTTGAAGTCGCCGTCAGCCTTAAGTGA |
| Transcript | >Pro_DTO377G3_2|g2648.t1 ATGGCAAAGGGGCTATTGGAAAGCAAGCTCCAGTTTGAGAAAAAGAACAAAGACCTTATTAGACTCCCAAAACAT GCCAAAGTCGAGAAGCGTCCTATACCTCATGCCCCAGTCGCATCCCCATATGCTGGCGCATTAGTACCTAAGATT GTCTATGTGTCTAAGACTACGCCATTCATGAGCGCCGTCAAGCGCGTCCAGAAACTCCTGCTGCAGGCCGAGAAG CGCGCCACAGCAAACATCAATCTCGAGGATACGCGCAAGAACGATAAACAGATACTCGAGGAGTTGTCGAAGATA CCAGAGAAGCGAGAGAAAGTTTTTGTGAAGGCGACAGGGCGGGCTATTGAGAAGGCGCTGAACGTAGCCAAATGG TTCGAGGAAAAGGAAACCGAGTACACAGTCTGTGTCAATACGGGGAGCGTGGTTGTCGTGGATGATATCGTCGAG GACGAAGAAATTAAAGCAAAAGAAGAACAGAAACGGCAACGGCAGCAAGAGCAAACCCCAACTGACCAGGGAGAT GCGGCTTCTAAGCCGGAATCCAAGTCAGCCGCAAAGAAGAGGAAACGTCAGGCCGCCGCGGTAGAGGATGATGCC GAGCTCCCCGAGAGCCGGATAAGGTGGATCAAAATGGTTGAAGTCGCCGTCAGCCTTAAGTGA |
| Gene | >Pro_DTO377G3_2|g2648.t1 ATGGCAAAGGGGCTATTGGAAAGCAAGCTCCAGTTTGAGAAAAAGAACAAAGACCTTATTAGACTCCCAAAACGT GCGCCTTCCCATCCGATCGCCTAAACGGCCAATGCTGAGAACCGGGGATCACAACTGCTGACTTTTGGATAACAG ATGCCAAAGTCGAGAAGCGTCCTATACCTCATGCCCCAGTCGCATCCCCATATGCTGGCGCATTAGTACCTAAGA TTGTCTATGTGTCTAAGACTACGCCATTCATGAGCGCCGTCAAGCGCGTCCAGAAACTCCTGCTGCAGGCCGAGA AGCGCGCCACAGCAAACATCAATCTCGAGGATACGCGCAAGAACGATAAACAGATACTCGAGGAGTTGTCGAAGA TACCAGAGAAGCGAGAGAAAGTTTTTGTGAAGGCGACAGGGCGGGCTATTGAGAAGGCGCTGAACGTAGCCAAAT GGTTCGAGGAAAAGGAAACCGAGTACACAGTCTGTGTCAATACGGGGAGCGTGGTTGTCGTGGATGATATCGTCG AGGACGAAGAAATTAAAGCAAAAGAAGAACAGAAACGGCAACGGCAGCAAGAGCAAACCCCAACTGACCAGGGAG ATGCGGCTTCTAAGCCGGAATCCAAGTCAGCCGCAAAGAAGAGGAAACGTCAGGCCGCCGCGGTAGAGGATGATG CCGAGCTCCCCGAGAGCCGGATAAGGTGGATCAAAATGGTTGAAGTCGCCGTCAGCCTTAAGTGA |