© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2623.t1 |
| Gene name | |
| Location | scaffold_03:518235..519773 |
| Strand | + |
| Gene length (bp) | 1538 |
| Transcript length (bp) | 1302 |
| Coding sequence length (bp) | 1302 |
| Protein length (aa) | 434 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 4.2E-42 | 167 | 295 |
| PF09336 | Vps4_C | Vps4 C terminal oligomerisation domain | 6.8E-29 | 370 | 429 |
| PF04212 | MIT | MIT (microtubule interacting and transport) domain | 1.9E-23 | 7 | 72 |
| PF07728 | AAA_5 | AAA domain (dynein-related subfamily) | 1.3E-04 | 167 | 233 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0005488 | binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 59.95 | 36.17 | 83.74 |
| 5d_25C | Five days - 25 degrees Celsius | 69.39 | 42.04 | 96.74 |
| 7d_25C | Seven days - 25 degrees Celsius | 72.09 | 43.87 | 100.32 |
| 10d_25C | Ten days - 25 degrees Celsius | 73.71 | 44.80 | 102.62 |
| 7d_15C | Seven days - 15 degrees Celsius | 66.33 | 40.16 | 92.51 |
| 7d_30C | Seven days - 30 degrees Celsius | 75.67 | 46.08 | 105.27 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.597973 | no |
| 3d_25C | 7d_25C | 0.479259 | no |
| 3d_25C | 7d_15C | 0.734921 | no |
| 3d_25C | 7d_30C | 0.342047 | no |
| 3d_25C | 10d_25C | 0.419417 | no |
| 5d_25C | 7d_25C | 0.909884 | no |
| 5d_25C | 7d_15C | 0.892081 | no |
| 5d_25C | 7d_30C | 0.771417 | no |
| 5d_25C | 10d_25C | 0.849976 | no |
| 7d_25C | 7d_15C | 0.781286 | no |
| 7d_25C | 7d_30C | 0.883094 | no |
| 7d_25C | 10d_25C | 0.950766 | no |
| 7d_15C | 7d_30C | 0.627896 | no |
| 7d_15C | 10d_25C | 0.713620 | no |
| 7d_30C | 10d_25C | 0.940114 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2623.t1 MSNTDFLGRAIDTVKKAIENDNDGEYEKAYQMYYSALELFMLALKWEKNPKSKEMIRSKAGEYMDRAEKLKNHLA EDRKKPSAVGANGKVAQGSGKGGKEDDDNGEDADAKKLRSALQGAILSEKPNVKWEDVAGLENAKEALKEAVILP IKFPHLFTGKRQPWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLFNMARENKPA IIFIDEVDALCGPRGEGESEASRRIKTELLVQMDGVGKDSKGVLILGATNIPWQLDAAIRRRFQRRIHISLPDFN ARMKMFMLAVGSTPCQMTQTDYRQLADLSEGYSGSDISICVQDALMQPIRKIQGATHYKKVLDEGVEKVTPCSPG DEGAVEMSWLDIDADKLLEPPLALKDFVKAVKNSRPTVSGEDLTRNAEWTQEFGSEGA* |
| Coding | >Pro_DTO377G3_2|g2623.t1 ATGAGTAATACAGATTTCCTGGGACGGGCGATTGATACGGTCAAGAAGGCGATCGAGAATGACAACGATGGCGAG TACGAAAAGGCTTATCAGATGTACTACTCCGCATTGGAGTTGTTCATGCTGGCCCTGAAATGGGAGAAGAACCCG AAATCGAAGGAAATGATCCGCTCAAAGGCCGGCGAATATATGGATCGCGCGGAGAAGCTTAAGAACCACCTCGCT GAGGACCGGAAAAAACCGAGTGCGGTTGGCGCAAATGGAAAGGTGGCGCAAGGCAGTGGGAAGGGAGGGAAGGAA GATGACGACAACGGCGAAGATGCGGATGCGAAAAAGCTTCGATCGGCGCTTCAAGGAGCTATTCTGTCGGAGAAG CCGAACGTCAAGTGGGAAGATGTTGCTGGCCTGGAGAACGCAAAGGAAGCATTGAAGGAAGCAGTCATTCTACCC ATCAAGTTCCCTCATTTGTTCACTGGCAAGCGCCAACCCTGGAAGGGTATCTTGCTCTACGGTCCTCCAGGCACG GGAAAATCTTATCTTGCCAAAGCCGTGGCAACTGAGGCAAACAGCACATTCTTCAGTGTCAGCAGTAGTGACCTG GTCTCGAAGTGGATGGGTGAGAGTGAAAGACTTGTGAAACAGTTGTTTAACATGGCCCGTGAGAATAAGCCCGCG ATTATCTTCATCGACGAGGTCGATGCGCTGTGCGGACCCCGTGGCGAAGGAGAGTCCGAGGCCTCACGGCGTATC AAGACCGAATTGCTTGTACAGATGGACGGTGTCGGCAAAGACTCGAAGGGCGTTTTGATTTTGGGCGCAACCAAT ATCCCTTGGCAACTGGATGCTGCTATTCGGCGACGATTCCAGCGAAGAATACACATCAGTCTTCCCGACTTCAAT GCACGAATGAAGATGTTCATGCTAGCCGTGGGCTCGACGCCGTGTCAAATGACCCAGACCGACTATCGCCAATTG GCCGATCTGAGCGAAGGCTACTCCGGTAGCGATATTAGTATTTGCGTGCAGGATGCACTAATGCAGCCAATCCGC AAGATTCAAGGAGCAACACATTATAAGAAGGTACTCGATGAGGGTGTAGAGAAAGTCACGCCTTGCTCACCAGGG GATGAGGGCGCAGTGGAAATGAGCTGGCTCGATATCGATGCAGATAAGCTTTTGGAGCCACCTCTCGCTCTGAAG GATTTCGTCAAGGCAGTCAAGAACTCCCGGCCAACCGTTAGCGGAGAGGATCTCACGAGGAACGCTGAATGGACC CAAGAATTCGGTAGTGAAGGTGCCTGA |
| Transcript | >Pro_DTO377G3_2|g2623.t1 ATGAGTAATACAGATTTCCTGGGACGGGCGATTGATACGGTCAAGAAGGCGATCGAGAATGACAACGATGGCGAG TACGAAAAGGCTTATCAGATGTACTACTCCGCATTGGAGTTGTTCATGCTGGCCCTGAAATGGGAGAAGAACCCG AAATCGAAGGAAATGATCCGCTCAAAGGCCGGCGAATATATGGATCGCGCGGAGAAGCTTAAGAACCACCTCGCT GAGGACCGGAAAAAACCGAGTGCGGTTGGCGCAAATGGAAAGGTGGCGCAAGGCAGTGGGAAGGGAGGGAAGGAA GATGACGACAACGGCGAAGATGCGGATGCGAAAAAGCTTCGATCGGCGCTTCAAGGAGCTATTCTGTCGGAGAAG CCGAACGTCAAGTGGGAAGATGTTGCTGGCCTGGAGAACGCAAAGGAAGCATTGAAGGAAGCAGTCATTCTACCC ATCAAGTTCCCTCATTTGTTCACTGGCAAGCGCCAACCCTGGAAGGGTATCTTGCTCTACGGTCCTCCAGGCACG GGAAAATCTTATCTTGCCAAAGCCGTGGCAACTGAGGCAAACAGCACATTCTTCAGTGTCAGCAGTAGTGACCTG GTCTCGAAGTGGATGGGTGAGAGTGAAAGACTTGTGAAACAGTTGTTTAACATGGCCCGTGAGAATAAGCCCGCG ATTATCTTCATCGACGAGGTCGATGCGCTGTGCGGACCCCGTGGCGAAGGAGAGTCCGAGGCCTCACGGCGTATC AAGACCGAATTGCTTGTACAGATGGACGGTGTCGGCAAAGACTCGAAGGGCGTTTTGATTTTGGGCGCAACCAAT ATCCCTTGGCAACTGGATGCTGCTATTCGGCGACGATTCCAGCGAAGAATACACATCAGTCTTCCCGACTTCAAT GCACGAATGAAGATGTTCATGCTAGCCGTGGGCTCGACGCCGTGTCAAATGACCCAGACCGACTATCGCCAATTG GCCGATCTGAGCGAAGGCTACTCCGGTAGCGATATTAGTATTTGCGTGCAGGATGCACTAATGCAGCCAATCCGC AAGATTCAAGGAGCAACACATTATAAGAAGGTACTCGATGAGGGTGTAGAGAAAGTCACGCCTTGCTCACCAGGG GATGAGGGCGCAGTGGAAATGAGCTGGCTCGATATCGATGCAGATAAGCTTTTGGAGCCACCTCTCGCTCTGAAG GATTTCGTCAAGGCAGTCAAGAACTCCCGGCCAACCGTTAGCGGAGAGGATCTCACGAGGAACGCTGAATGGACC CAAGAATTCGGTAGTGAAGGTGCCTGA |
| Gene | >Pro_DTO377G3_2|g2623.t1 ATGAGTAATACAGATTTCCTGGGACGGGCGATTGATACGGTCAAGAAGGCGATCGAGAATGACAACGATGGCGAG TACGAAAAGGCTTATCAGATGTACTACTCCGCATTGGAGTTGTTCATGCTGGCCCTGAAATGGGAGAAGAACCCG AAATCGAAGGAAATGATCCGCTCAAAGGCCGGCGAATATATGGATCGCGCGGAGAAGCTTAAGAACCACCTCGCT GAGGACCGGAAAAAACCGAGTGCGGTTGGCGCAAATGGAAAGGTGGCGCAAGGCAGTGGGAAGGGAGGGTATGTA TCAACTTCTTTGGACAAAAGTTTATGTTTTAGCACCGCCATATGTGTGATAAACAGTGTTAGCAAGTGAGCTTTT GTCCTATGTATTCCCGCTAACAACACTGAATCGGACAGGAAGGAAGATGACGACAACGGCGAAGATGCGGATGCG AAAAAGCTTCGATCGGCGCTTCAAGGAGCTATTCTGTCGGAGAAGCCGAACGTCAAGTGGGAAGATGTTGCTGGC CTGGAGAACGCAAAGGAAGCATTGAAGGAAGCAGTCATTCTACCCATCAAGTTCCCTCATTTGTTCACTGGCAAG CGCCAACCCTGGAAGGGTATCTTGCTCTACGGTCCTCCAGGCACGGGAAAATCTTATCTTGCCAAAGCCGTGGCA ACTGAGGCAAACAGCACATTCTTCAGTGTCAGCAGTAGTGACCTGGTCTCGAAGTGGATGGGTGAGAGTGAAAGG TATGCGATATCTTTATCTACGGGAGTTTCGAGAGTTGCATACTAATTCGCGTCTAGACTTGTGAAACAGTTGTTT AACATGGCCCGTGAGAATAAGCCCGCGATTATCTTCATCGACGAGGTCGATGCGCTGTGCGGACCCCGTGGCGAA GGAGAGTCCGAGGCCTCACGGCGTATCAAGACCGAATTGCTTGTACAGATGGACGGTGTCGGCAAAGACTCGAAG GGCGTTTTGATTTTGGGCGCAACCAATATCCCTTGGCAACTGGATGCTGCTATTCGGCGACGATTCCAGCGAAGA ATACACATCAGTCTTCCCGACTTCAATGCACGAATGAAGATGTTCATGCTAGCCGTGGGCTCGACGCCGTGTCAA ATGACCCAGACCGACTATCGCCAATTGGCCGATCTGAGCGAAGGCTACTCCGGTAGCGATATTAGTATTTGCGTG CAGGATGCACTAATGCAGCCAATCCGCAAGATTCAAGGAGCAACACATTATAAGAAGGTATGTATACTCAGTTCT CACCGTCCCAGACCACAGCGACTGACCCGACTCCATCATAGGTACTCGATGAGGGTGTAGAGAAAGTCACGCCTT GCTCACCAGGGGATGAGGGCGCAGTGGAAATGAGCTGGCTCGATATCGATGCAGATAAGCTTTTGGAGCCACCTC TCGCTCTGAAGGATTTCGTCAAGGCAGTCAAGAACTCCCGGCCAACCGTTAGCGGAGAGGATCTCACGAGGAACG CTGAATGGACCCAAGAATTCGGTAGTGAAGGTGCCTGA |