Protein ID | Pro_DTO377G3_2|g2608.t1 |
Gene name | |
Location | scaffold_03:487255..490145 |
Strand | - |
Gene length (bp) | 2890 |
Transcript length (bp) | 2838 |
Coding sequence length (bp) | 2838 |
Protein length (aa) | 946 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-10 | 494 | 563 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003723 | RNA binding | Yes |
GO:0097159 | organic cyclic compound binding | No |
GO:0005488 | binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 32 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 92.16 | 55.60 | 128.73 |
5d_25C | Five days - 25 degrees Celsius | 116.42 | 69.14 | 163.69 |
7d_25C | Seven days - 25 degrees Celsius | 120.19 | 70.61 | 169.77 |
10d_25C | Ten days - 25 degrees Celsius | 165.94 | 96.14 | 235.73 |
7d_15C | Seven days - 15 degrees Celsius | 139.32 | 80.62 | 198.01 |
7d_30C | Seven days - 30 degrees Celsius | 130.82 | 77.71 | 183.94 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.342182 | no |
3d_25C | 7d_25C | 0.266251 | no |
3d_25C | 7d_15C | 0.062630 | no |
3d_25C | 7d_30C | 0.110900 | no |
3d_25C | 10d_25C | 0.006000 | yes |
5d_25C | 7d_25C | 0.927162 | no |
5d_25C | 7d_15C | 0.512388 | no |
5d_25C | 7d_30C | 0.685715 | no |
5d_25C | 10d_25C | 0.124534 | no |
7d_25C | 7d_15C | 0.609797 | no |
7d_25C | 7d_30C | 0.783744 | no |
7d_25C | 10d_25C | 0.178456 | no |
7d_15C | 7d_30C | 0.849847 | no |
7d_15C | 10d_25C | 0.530448 | no |
7d_30C | 10d_25C | 0.349606 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g2608.t1 MLKPFQIRNLRVSQPGQSADSRTPAGVVQISATDYDDLASNHPRARLTYMDDDDDDETITVGSAFELSQRLEEPL DTNTQLESVELSPQDIPMHIFDIRRSNSVTELWKRFEDNVPKQGMADEKDETQATSKTIVLEEQHEVPAPHITTS PSVSRDQPRSLMEAFEAELADILNDAEYSKSRVPEPDSPPTGSSTNTDSGRSPHPVEILAAQVLDHLINGATMVQ SEWRSKIPELQRQVHNAQKQFEAAQRTLPQNVQASLRTLLATVEAHLRTAYNNLPDGGRQMAEDAFQAGRPVAEN AADGFRMMASELNEVGRTLFAAFESEFGRATPTASASTPASEMPNSRATGPFFNSSSSNESAAPSTLYQNSGAHS SSTARNEKSTVDSGHPHSSNTAQAGVPPIQSCHGQPASPHSNHWAPPAWPAPSWNPFQTYNAPPPPCPPPPASLP NFTYWPQRPPAPPPLPTFNSPLKATQTSNVMSGELKTDSATKSLFIGNVGFKVTDKMIQDVFAAKGFLVEVDLPL DTASKTHAGFGYVHFPSDYPAFAAMEALQGAVIDGHSINLEPMYRSPIEGVRPVQISPNASTTTHDTQTDSAPDE TSDITDAPSERNSTTSGPFAYPLAIKLQNSPSKPGKTDNQTGPSALLDSPSDDPAFSARFPSLLPETSAQRNDPL SDQGVSSYSHTESGFPPVSQWEAQLLSNRQEHRGAEPIPGVLHSQSPNDLEHPEVLSTHGSPLHPTPKAFAGSQP ASRLEAAGNPSSIVGARRPSDHSKSMQDQIGHSSGAKETVRPVLDVNDPQYAVKLKRRVTEHQTYKPNHWNAAET GRRNPLGHSASVRRPADTWARLSRRERNGVSSHERIPGSFPVDDTMRVELPSTHDTNVPESDDGTIEQCVSALVD MGYGAGQEGGRSRMAVYAAMANGVLTDAIDMIEEERQIYERRPSQ* |
Coding | >Pro_DTO377G3_2|g2608.t1 ATGTTGAAACCCTTCCAAATCAGAAACCTTCGGGTATCCCAACCCGGGCAGTCTGCGGATTCTCGTACTCCTGCA GGAGTTGTCCAAATCTCTGCTACAGATTACGATGATTTGGCGTCAAACCATCCCCGCGCAAGGTTGACTTACATG GATGACGATGATGATGACGAAACAATCACCGTTGGATCCGCTTTCGAGCTATCTCAACGCCTTGAGGAGCCCCTA GACACTAACACACAGCTTGAATCCGTCGAACTCTCTCCCCAAGATATCCCCATGCACATCTTTGATATTCGTCGA TCAAACTCCGTGACCGAGTTGTGGAAGCGATTTGAAGATAACGTTCCAAAACAAGGCATGGCTGATGAAAAGGAC GAGACGCAAGCTACTTCTAAAACTATTGTTCTCGAGGAGCAACATGAAGTCCCAGCTCCTCATATCACGACCTCG CCGTCGGTCTCTAGGGACCAGCCTCGATCTCTCATGGAAGCATTCGAAGCTGAGCTAGCAGACATTCTCAATGAC GCTGAGTACTCGAAGAGTCGAGTACCTGAACCTGACTCGCCACCGACTGGGTCATCAACCAACACAGACTCAGGG CGATCCCCTCATCCCGTTGAGATTTTGGCAGCACAGGTTCTAGACCACCTGATCAACGGAGCCACTATGGTACAA TCTGAATGGAGATCAAAAATACCCGAGCTACAGCGACAAGTACACAATGCTCAGAAACAATTTGAGGCTGCACAG AGAACTCTGCCTCAGAATGTGCAAGCCTCATTGCGGACACTACTCGCCACTGTTGAGGCTCACCTAAGAACCGCT TATAATAATCTTCCAGATGGCGGAAGGCAAATGGCAGAAGATGCCTTCCAGGCAGGAAGGCCTGTTGCTGAGAAT GCTGCTGATGGTTTTCGTATGATGGCCTCCGAACTCAACGAAGTCGGAAGAACATTATTTGCCGCATTTGAAAGC GAGTTTGGGCGCGCTACACCAACAGCCTCTGCGTCGACCCCGGCTTCTGAGATGCCAAATTCTAGAGCAACCGGG CCGTTCTTTAACTCTAGTTCAAGCAATGAATCTGCGGCTCCGAGCACTTTGTACCAGAACTCAGGCGCACATTCT TCAAGCACAGCCAGAAACGAAAAGTCAACGGTAGACTCAGGTCATCCGCACTCATCTAATACTGCACAAGCAGGA GTACCCCCTATCCAAAGTTGTCATGGTCAACCCGCATCCCCTCACTCAAATCACTGGGCACCTCCCGCATGGCCT GCTCCGTCCTGGAATCCATTCCAAACTTATAACGCACCCCCGCCTCCGTGTCCTCCACCACCGGCATCGCTGCCG AACTTCACTTACTGGCCTCAAAGGCCACCTGCGCCTCCGCCTCTTCCTACGTTCAATTCCCCGTTGAAAGCTACA CAGACATCGAACGTCATGTCTGGAGAATTGAAAACCGATTCAGCAACTAAGTCCTTGTTTATTGGGAATGTTGGT TTCAAGGTTACCGATAAGATGATACAGGATGTGTTTGCTGCCAAGGGATTCCTTGTCGAGGTGGATCTCCCATTA GATACCGCATCAAAAACACATGCAGGCTTCGGCTACGTTCATTTCCCCTCGGATTATCCGGCTTTTGCTGCAATG GAAGCATTGCAAGGTGCTGTCATTGATGGTCACTCGATAAACCTTGAGCCTATGTATCGTTCCCCCATCGAAGGT GTGCGTCCGGTGCAGATTTCACCCAATGCCAGTACAACCACACACGACACTCAGACAGACAGCGCCCCGGATGAG ACGAGCGATATAACCGATGCTCCCTCTGAGCGAAACAGTACCACATCGGGGCCCTTTGCCTACCCGCTTGCTATC AAGCTACAAAATAGTCCATCCAAGCCTGGCAAAACGGATAATCAGACGGGACCGTCCGCACTACTTGATTCCCCA AGTGACGATCCTGCATTTAGCGCACGTTTCCCCTCGCTTCTACCCGAGACGAGTGCACAGCGTAACGATCCATTG AGTGATCAAGGTGTTTCCTCATATTCGCACACGGAGTCTGGTTTCCCACCTGTGTCTCAATGGGAAGCCCAACTT CTTTCAAATCGGCAGGAACACCGCGGAGCAGAACCTATACCTGGTGTTTTGCATAGTCAATCACCAAACGACCTA GAACACCCTGAGGTACTCTCAACTCACGGTTCACCCTTGCATCCTACCCCGAAGGCATTTGCTGGATCTCAACCA GCTTCTCGTCTAGAGGCAGCCGGCAATCCGTCATCGATCGTTGGTGCTAGACGACCTTCCGACCATAGTAAATCA ATGCAAGATCAAATCGGTCATTCTTCCGGTGCCAAGGAGACTGTGCGCCCAGTGCTAGATGTCAATGACCCCCAG TATGCGGTCAAACTGAAGCGTCGAGTTACTGAGCACCAAACTTATAAACCAAATCATTGGAACGCTGCGGAGACT GGCCGTCGTAATCCCCTCGGTCATTCCGCAAGCGTGCGTCGTCCTGCAGACACATGGGCTCGGCTGTCTAGGCGA GAACGAAATGGTGTATCTTCTCACGAGCGAATCCCCGGAAGCTTCCCAGTGGACGATACAATGAGGGTCGAACTC CCCAGCACTCATGATACCAATGTTCCTGAGTCGGATGACGGGACAATCGAACAATGTGTCTCTGCTCTTGTCGAC ATGGGCTACGGGGCTGGACAGGAGGGCGGACGGTCGAGGATGGCTGTGTATGCAGCCATGGCAAATGGTGTCCTC ACGGATGCGATTGATATGATTGAAGAGGAAAGACAGATCTATGAACGGCGGCCTTCGCAGTGA |
Transcript | >Pro_DTO377G3_2|g2608.t1 ATGTTGAAACCCTTCCAAATCAGAAACCTTCGGGTATCCCAACCCGGGCAGTCTGCGGATTCTCGTACTCCTGCA GGAGTTGTCCAAATCTCTGCTACAGATTACGATGATTTGGCGTCAAACCATCCCCGCGCAAGGTTGACTTACATG GATGACGATGATGATGACGAAACAATCACCGTTGGATCCGCTTTCGAGCTATCTCAACGCCTTGAGGAGCCCCTA GACACTAACACACAGCTTGAATCCGTCGAACTCTCTCCCCAAGATATCCCCATGCACATCTTTGATATTCGTCGA TCAAACTCCGTGACCGAGTTGTGGAAGCGATTTGAAGATAACGTTCCAAAACAAGGCATGGCTGATGAAAAGGAC GAGACGCAAGCTACTTCTAAAACTATTGTTCTCGAGGAGCAACATGAAGTCCCAGCTCCTCATATCACGACCTCG CCGTCGGTCTCTAGGGACCAGCCTCGATCTCTCATGGAAGCATTCGAAGCTGAGCTAGCAGACATTCTCAATGAC GCTGAGTACTCGAAGAGTCGAGTACCTGAACCTGACTCGCCACCGACTGGGTCATCAACCAACACAGACTCAGGG CGATCCCCTCATCCCGTTGAGATTTTGGCAGCACAGGTTCTAGACCACCTGATCAACGGAGCCACTATGGTACAA TCTGAATGGAGATCAAAAATACCCGAGCTACAGCGACAAGTACACAATGCTCAGAAACAATTTGAGGCTGCACAG AGAACTCTGCCTCAGAATGTGCAAGCCTCATTGCGGACACTACTCGCCACTGTTGAGGCTCACCTAAGAACCGCT TATAATAATCTTCCAGATGGCGGAAGGCAAATGGCAGAAGATGCCTTCCAGGCAGGAAGGCCTGTTGCTGAGAAT GCTGCTGATGGTTTTCGTATGATGGCCTCCGAACTCAACGAAGTCGGAAGAACATTATTTGCCGCATTTGAAAGC GAGTTTGGGCGCGCTACACCAACAGCCTCTGCGTCGACCCCGGCTTCTGAGATGCCAAATTCTAGAGCAACCGGG CCGTTCTTTAACTCTAGTTCAAGCAATGAATCTGCGGCTCCGAGCACTTTGTACCAGAACTCAGGCGCACATTCT TCAAGCACAGCCAGAAACGAAAAGTCAACGGTAGACTCAGGTCATCCGCACTCATCTAATACTGCACAAGCAGGA GTACCCCCTATCCAAAGTTGTCATGGTCAACCCGCATCCCCTCACTCAAATCACTGGGCACCTCCCGCATGGCCT GCTCCGTCCTGGAATCCATTCCAAACTTATAACGCACCCCCGCCTCCGTGTCCTCCACCACCGGCATCGCTGCCG AACTTCACTTACTGGCCTCAAAGGCCACCTGCGCCTCCGCCTCTTCCTACGTTCAATTCCCCGTTGAAAGCTACA CAGACATCGAACGTCATGTCTGGAGAATTGAAAACCGATTCAGCAACTAAGTCCTTGTTTATTGGGAATGTTGGT TTCAAGGTTACCGATAAGATGATACAGGATGTGTTTGCTGCCAAGGGATTCCTTGTCGAGGTGGATCTCCCATTA GATACCGCATCAAAAACACATGCAGGCTTCGGCTACGTTCATTTCCCCTCGGATTATCCGGCTTTTGCTGCAATG GAAGCATTGCAAGGTGCTGTCATTGATGGTCACTCGATAAACCTTGAGCCTATGTATCGTTCCCCCATCGAAGGT GTGCGTCCGGTGCAGATTTCACCCAATGCCAGTACAACCACACACGACACTCAGACAGACAGCGCCCCGGATGAG ACGAGCGATATAACCGATGCTCCCTCTGAGCGAAACAGTACCACATCGGGGCCCTTTGCCTACCCGCTTGCTATC AAGCTACAAAATAGTCCATCCAAGCCTGGCAAAACGGATAATCAGACGGGACCGTCCGCACTACTTGATTCCCCA AGTGACGATCCTGCATTTAGCGCACGTTTCCCCTCGCTTCTACCCGAGACGAGTGCACAGCGTAACGATCCATTG AGTGATCAAGGTGTTTCCTCATATTCGCACACGGAGTCTGGTTTCCCACCTGTGTCTCAATGGGAAGCCCAACTT CTTTCAAATCGGCAGGAACACCGCGGAGCAGAACCTATACCTGGTGTTTTGCATAGTCAATCACCAAACGACCTA GAACACCCTGAGGTACTCTCAACTCACGGTTCACCCTTGCATCCTACCCCGAAGGCATTTGCTGGATCTCAACCA GCTTCTCGTCTAGAGGCAGCCGGCAATCCGTCATCGATCGTTGGTGCTAGACGACCTTCCGACCATAGTAAATCA ATGCAAGATCAAATCGGTCATTCTTCCGGTGCCAAGGAGACTGTGCGCCCAGTGCTAGATGTCAATGACCCCCAG TATGCGGTCAAACTGAAGCGTCGAGTTACTGAGCACCAAACTTATAAACCAAATCATTGGAACGCTGCGGAGACT GGCCGTCGTAATCCCCTCGGTCATTCCGCAAGCGTGCGTCGTCCTGCAGACACATGGGCTCGGCTGTCTAGGCGA GAACGAAATGGTGTATCTTCTCACGAGCGAATCCCCGGAAGCTTCCCAGTGGACGATACAATGAGGGTCGAACTC CCCAGCACTCATGATACCAATGTTCCTGAGTCGGATGACGGGACAATCGAACAATGTGTCTCTGCTCTTGTCGAC ATGGGCTACGGGGCTGGACAGGAGGGCGGACGGTCGAGGATGGCTGTGTATGCAGCCATGGCAAATGGTGTCCTC ACGGATGCGATTGATATGATTGAAGAGGAAAGACAGATCTATGAACGGCGGCCTTCGCAGTGA |
Gene | >Pro_DTO377G3_2|g2608.t1 ATGTTGAAACCCTTCCAAATCAGAAACCTTCGGGTATCCCAACCCGGGCAGTCTGCGGATTCTCGTACTCCTGCA GGAGTTGTCCAAATCTCTGCTACAGATTACGATGATTTGGCGTCAAACCATCCCCGCGCAAGGTTGACTTACATG GATGACGATGATGATGACGAAACAATCACCGTAAGTTCAGCACAGTGTTTATCGATCATCGAAATCTCACTCTTT TCCTTAGGTTGGATCCGCTTTCGAGCTATCTCAACGCCTTGAGGAGCCCCTAGACACTAACACACAGCTTGAATC CGTCGAACTCTCTCCCCAAGATATCCCCATGCACATCTTTGATATTCGTCGATCAAACTCCGTGACCGAGTTGTG GAAGCGATTTGAAGATAACGTTCCAAAACAAGGCATGGCTGATGAAAAGGACGAGACGCAAGCTACTTCTAAAAC TATTGTTCTCGAGGAGCAACATGAAGTCCCAGCTCCTCATATCACGACCTCGCCGTCGGTCTCTAGGGACCAGCC TCGATCTCTCATGGAAGCATTCGAAGCTGAGCTAGCAGACATTCTCAATGACGCTGAGTACTCGAAGAGTCGAGT ACCTGAACCTGACTCGCCACCGACTGGGTCATCAACCAACACAGACTCAGGGCGATCCCCTCATCCCGTTGAGAT TTTGGCAGCACAGGTTCTAGACCACCTGATCAACGGAGCCACTATGGTACAATCTGAATGGAGATCAAAAATACC CGAGCTACAGCGACAAGTACACAATGCTCAGAAACAATTTGAGGCTGCACAGAGAACTCTGCCTCAGAATGTGCA AGCCTCATTGCGGACACTACTCGCCACTGTTGAGGCTCACCTAAGAACCGCTTATAATAATCTTCCAGATGGCGG AAGGCAAATGGCAGAAGATGCCTTCCAGGCAGGAAGGCCTGTTGCTGAGAATGCTGCTGATGGTTTTCGTATGAT GGCCTCCGAACTCAACGAAGTCGGAAGAACATTATTTGCCGCATTTGAAAGCGAGTTTGGGCGCGCTACACCAAC AGCCTCTGCGTCGACCCCGGCTTCTGAGATGCCAAATTCTAGAGCAACCGGGCCGTTCTTTAACTCTAGTTCAAG CAATGAATCTGCGGCTCCGAGCACTTTGTACCAGAACTCAGGCGCACATTCTTCAAGCACAGCCAGAAACGAAAA GTCAACGGTAGACTCAGGTCATCCGCACTCATCTAATACTGCACAAGCAGGAGTACCCCCTATCCAAAGTTGTCA TGGTCAACCCGCATCCCCTCACTCAAATCACTGGGCACCTCCCGCATGGCCTGCTCCGTCCTGGAATCCATTCCA AACTTATAACGCACCCCCGCCTCCGTGTCCTCCACCACCGGCATCGCTGCCGAACTTCACTTACTGGCCTCAAAG GCCACCTGCGCCTCCGCCTCTTCCTACGTTCAATTCCCCGTTGAAAGCTACACAGACATCGAACGTCATGTCTGG AGAATTGAAAACCGATTCAGCAACTAAGTCCTTGTTTATTGGGAATGTTGGTTTCAAGGTTACCGATAAGATGAT ACAGGATGTGTTTGCTGCCAAGGGATTCCTTGTCGAGGTGGATCTCCCATTAGATACCGCATCAAAAACACATGC AGGCTTCGGCTACGTTCATTTCCCCTCGGATTATCCGGCTTTTGCTGCAATGGAAGCATTGCAAGGTGCTGTCAT TGATGGTCACTCGATAAACCTTGAGCCTATGTATCGTTCCCCCATCGAAGGTGTGCGTCCGGTGCAGATTTCACC CAATGCCAGTACAACCACACACGACACTCAGACAGACAGCGCCCCGGATGAGACGAGCGATATAACCGATGCTCC CTCTGAGCGAAACAGTACCACATCGGGGCCCTTTGCCTACCCGCTTGCTATCAAGCTACAAAATAGTCCATCCAA GCCTGGCAAAACGGATAATCAGACGGGACCGTCCGCACTACTTGATTCCCCAAGTGACGATCCTGCATTTAGCGC ACGTTTCCCCTCGCTTCTACCCGAGACGAGTGCACAGCGTAACGATCCATTGAGTGATCAAGGTGTTTCCTCATA TTCGCACACGGAGTCTGGTTTCCCACCTGTGTCTCAATGGGAAGCCCAACTTCTTTCAAATCGGCAGGAACACCG CGGAGCAGAACCTATACCTGGTGTTTTGCATAGTCAATCACCAAACGACCTAGAACACCCTGAGGTACTCTCAAC TCACGGTTCACCCTTGCATCCTACCCCGAAGGCATTTGCTGGATCTCAACCAGCTTCTCGTCTAGAGGCAGCCGG CAATCCGTCATCGATCGTTGGTGCTAGACGACCTTCCGACCATAGTAAATCAATGCAAGATCAAATCGGTCATTC TTCCGGTGCCAAGGAGACTGTGCGCCCAGTGCTAGATGTCAATGACCCCCAGTATGCGGTCAAACTGAAGCGTCG AGTTACTGAGCACCAAACTTATAAACCAAATCATTGGAACGCTGCGGAGACTGGCCGTCGTAATCCCCTCGGTCA TTCCGCAAGCGTGCGTCGTCCTGCAGACACATGGGCTCGGCTGTCTAGGCGAGAACGAAATGGTGTATCTTCTCA CGAGCGAATCCCCGGAAGCTTCCCAGTGGACGATACAATGAGGGTCGAACTCCCCAGCACTCATGATACCAATGT TCCTGAGTCGGATGACGGGACAATCGAACAATGTGTCTCTGCTCTTGTCGACATGGGCTACGGGGCTGGACAGGA GGGCGGACGGTCGAGGATGGCTGTGTATGCAGCCATGGCAAATGGTGTCCTCACGGATGCGATTGATATGATTGA AGAGGAAAGACAGATCTATGAACGGCGGCCTTCGCAGTGA |