© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2601.t1 |
| Gene name | |
| Location | scaffold_03:451938..454392 |
| Strand | - |
| Gene length (bp) | 2454 |
| Transcript length (bp) | 1749 |
| Coding sequence length (bp) | 1749 |
| Protein length (aa) | 583 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 9.5E-60 | 88 | 536 |
| PF00324 | AA_permease | Amino acid permease | 6.0E-17 | 108 | 547 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 92 | 114 | 22 |
| 2 | 121 | 143 | 22 |
| 3 | 215 | 237 | 22 |
| 4 | 244 | 266 | 22 |
| 5 | 286 | 303 | 17 |
| 6 | 324 | 346 | 22 |
| 7 | 377 | 399 | 22 |
| 8 | 430 | 449 | 19 |
| 9 | 453 | 475 | 22 |
| 10 | 495 | 517 | 22 |
| 11 | 527 | 549 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 20.74 | 11.09 | 30.40 |
| 5d_25C | Five days - 25 degrees Celsius | 24.11 | 13.33 | 34.88 |
| 7d_25C | Seven days - 25 degrees Celsius | 30.57 | 17.49 | 43.65 |
| 10d_25C | Ten days - 25 degrees Celsius | 22.26 | 12.18 | 32.33 |
| 7d_15C | Seven days - 15 degrees Celsius | 22.68 | 11.68 | 33.68 |
| 7d_30C | Seven days - 30 degrees Celsius | 33.78 | 19.64 | 47.92 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.636837 | no |
| 3d_25C | 7d_25C | 0.121403 | no |
| 3d_25C | 7d_15C | 0.803883 | no |
| 3d_25C | 7d_30C | 0.039348 | yes |
| 3d_25C | 10d_25C | 0.844798 | no |
| 5d_25C | 7d_25C | 0.385764 | no |
| 5d_25C | 7d_15C | 0.872366 | no |
| 5d_25C | 7d_30C | 0.173791 | no |
| 5d_25C | 10d_25C | 0.820979 | no |
| 7d_25C | 7d_15C | 0.270969 | no |
| 7d_25C | 7d_30C | 0.751511 | no |
| 7d_25C | 10d_25C | 0.209031 | no |
| 7d_15C | 7d_30C | 0.114615 | no |
| 7d_15C | 10d_25C | 0.964000 | no |
| 7d_30C | 10d_25C | 0.079853 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2601.t1 MSTSSPGLCPRLSALGKAIHPFRFPEPTTPALYTVDIIQDFYPDRKHQTEGVDTPAPLQPTMATIHDDDELLLAR IGYKQELRREFSKWSTVSYAISILGVLGSVPATFGAPLSAGGPATAVWCWLIGSCMAMCIGSSVAELVSAYPTAG GMYFVTKQVVPPDQVPIFSWIQGWCNLLGQTAGVSSVAYTVSQMLLACVSMNSDLVDGKYSYAPTALETVLVSIA VLCILGVICSLTTKSLHRIILWFAPINIGATICICIALLTLTPNLQPASWVFGHFTDGSGWGSKVFSFFLGFLSV AWTMTDYDGTTHMSEETHDAAVRGPVAIQTAVLVSGALGWLLTVSMCFCLTDFEGILTSPTGLPAAQIFLNAGGK RGGTVMWAFAILVQFFTGCSAMLADTRMAYAFARDDALPFSKYLSKVNPRTHTPVNAVWFVVFFSVGLNCIAIGS TQTATAIFNITAPALDISYVSVILAHQLYKSKVKFIEGPFTLGRWGTSINYIAVVWVLFISTILFFPPQLPVTPA NMNYAICVGGFIAAFALIWWWVAARGKYTGPQTNDIIREIPTEDDGDDSEESGEITV* |
| Coding | >Pro_DTO377G3_2|g2601.t1 ATGTCAACATCGTCTCCAGGGCTTTGTCCTCGTCTCAGCGCCTTAGGCAAAGCAATTCATCCTTTCCGGTTTCCT GAACCGACGACCCCTGCTCTTTACACCGTAGATATAATACAAGACTTCTACCCGGATCGCAAACATCAGACAGAA GGAGTAGATACACCAGCCCCTCTTCAACCTACAATGGCTACTATTCACGATGATGATGAGCTGTTGTTGGCCCGC ATTGGCTATAAACAGGAGTTACGACGAGAGTTCTCCAAATGGTCGACTGTCTCATATGCCATCTCTATTCTTGGA GTCCTTGGCTCCGTGCCGGCGACATTCGGTGCGCCGTTGTCAGCTGGCGGTCCAGCAACAGCTGTATGGTGTTGG TTGATCGGTTCATGCATGGCTATGTGCATTGGAAGCTCCGTGGCAGAGTTAGTATCGGCATATCCCACAGCCGGA GGGATGTACTTTGTCACAAAGCAGGTCGTGCCTCCCGATCAGGTCCCAATTTTCTCCTGGATCCAGGGCTGGTGT AACCTCCTTGGACAGACCGCAGGAGTCTCCAGTGTGGCATACACGGTCAGTCAAATGTTGCTAGCCTGTGTCAGT ATGAATTCGGATCTTGTAGATGGCAAGTATTCGTATGCACCGACGGCGCTGGAGACCGTTCTAGTATCAATCGCA GTTCTATGTATTCTTGGGGTGATTTGTTCGTTGACTACGAAATCACTACATCGAATTATCCTATGGTTTGCTCCC ATAAACATTGGGGCGACTATCTGCATATGCATTGCGCTGCTTACTCTTACCCCTAATTTACAGCCAGCCTCTTGG GTCTTCGGTCATTTCACTGATGGCTCAGGATGGGGCTCAAAAGTCTTTTCTTTTTTCCTGGGCTTTTTATCTGTT GCATGGACAATGACCGACTACGATGGAACGACACATATGTCTGAAGAGACCCATGATGCCGCCGTGCGAGGACCA GTTGCTATCCAGACAGCCGTCTTGGTATCCGGGGCACTCGGGTGGCTCCTAACCGTCTCAATGTGTTTTTGTTTG ACCGATTTCGAGGGAATTCTAACCTCCCCTACCGGTCTTCCCGCAGCCCAGATCTTCCTCAATGCCGGTGGGAAA CGAGGTGGCACAGTTATGTGGGCATTTGCCATTTTGGTCCAATTCTTCACAGGCTGTTCAGCTATGTTAGCAGAT ACGAGAATGGCCTATGCCTTTGCGCGAGACGATGCGCTTCCATTTTCAAAGTACCTTTCCAAGGTCAATCCTCGG ACTCATACCCCGGTCAATGCAGTGTGGTTCGTGGTTTTCTTCAGCGTAGGCTTGAACTGCATCGCTATCGGCTCC ACGCAAACGGCAACCGCAATATTCAACATCACTGCCCCTGCACTAGACATCTCTTACGTGTCTGTCATTCTCGCC CACCAGCTCTATAAATCGAAGGTCAAATTCATCGAGGGCCCTTTTACGCTGGGCAGATGGGGTACTTCTATTAAC TATATTGCTGTTGTCTGGGTCTTGTTCATCAGTACAATTCTTTTCTTCCCGCCACAGCTTCCTGTGACACCCGCA AATATGAATTACGCCATCTGTGTTGGCGGCTTTATTGCCGCTTTTGCTTTGATATGGTGGTGGGTTGCGGCTCGA GGAAAGTACACTGGTCCTCAAACTAATGATATCATACGAGAAATTCCCACCGAGGACGATGGCGACGATTCCGAA GAGTCAGGCGAGATCACTGTTTAG |
| Transcript | >Pro_DTO377G3_2|g2601.t1 ATGTCAACATCGTCTCCAGGGCTTTGTCCTCGTCTCAGCGCCTTAGGCAAAGCAATTCATCCTTTCCGGTTTCCT GAACCGACGACCCCTGCTCTTTACACCGTAGATATAATACAAGACTTCTACCCGGATCGCAAACATCAGACAGAA GGAGTAGATACACCAGCCCCTCTTCAACCTACAATGGCTACTATTCACGATGATGATGAGCTGTTGTTGGCCCGC ATTGGCTATAAACAGGAGTTACGACGAGAGTTCTCCAAATGGTCGACTGTCTCATATGCCATCTCTATTCTTGGA GTCCTTGGCTCCGTGCCGGCGACATTCGGTGCGCCGTTGTCAGCTGGCGGTCCAGCAACAGCTGTATGGTGTTGG TTGATCGGTTCATGCATGGCTATGTGCATTGGAAGCTCCGTGGCAGAGTTAGTATCGGCATATCCCACAGCCGGA GGGATGTACTTTGTCACAAAGCAGGTCGTGCCTCCCGATCAGGTCCCAATTTTCTCCTGGATCCAGGGCTGGTGT AACCTCCTTGGACAGACCGCAGGAGTCTCCAGTGTGGCATACACGGTCAGTCAAATGTTGCTAGCCTGTGTCAGT ATGAATTCGGATCTTGTAGATGGCAAGTATTCGTATGCACCGACGGCGCTGGAGACCGTTCTAGTATCAATCGCA GTTCTATGTATTCTTGGGGTGATTTGTTCGTTGACTACGAAATCACTACATCGAATTATCCTATGGTTTGCTCCC ATAAACATTGGGGCGACTATCTGCATATGCATTGCGCTGCTTACTCTTACCCCTAATTTACAGCCAGCCTCTTGG GTCTTCGGTCATTTCACTGATGGCTCAGGATGGGGCTCAAAAGTCTTTTCTTTTTTCCTGGGCTTTTTATCTGTT GCATGGACAATGACCGACTACGATGGAACGACACATATGTCTGAAGAGACCCATGATGCCGCCGTGCGAGGACCA GTTGCTATCCAGACAGCCGTCTTGGTATCCGGGGCACTCGGGTGGCTCCTAACCGTCTCAATGTGTTTTTGTTTG ACCGATTTCGAGGGAATTCTAACCTCCCCTACCGGTCTTCCCGCAGCCCAGATCTTCCTCAATGCCGGTGGGAAA CGAGGTGGCACAGTTATGTGGGCATTTGCCATTTTGGTCCAATTCTTCACAGGCTGTTCAGCTATGTTAGCAGAT ACGAGAATGGCCTATGCCTTTGCGCGAGACGATGCGCTTCCATTTTCAAAGTACCTTTCCAAGGTCAATCCTCGG ACTCATACCCCGGTCAATGCAGTGTGGTTCGTGGTTTTCTTCAGCGTAGGCTTGAACTGCATCGCTATCGGCTCC ACGCAAACGGCAACCGCAATATTCAACATCACTGCCCCTGCACTAGACATCTCTTACGTGTCTGTCATTCTCGCC CACCAGCTCTATAAATCGAAGGTCAAATTCATCGAGGGCCCTTTTACGCTGGGCAGATGGGGTACTTCTATTAAC TATATTGCTGTTGTCTGGGTCTTGTTCATCAGTACAATTCTTTTCTTCCCGCCACAGCTTCCTGTGACACCCGCA AATATGAATTACGCCATCTGTGTTGGCGGCTTTATTGCCGCTTTTGCTTTGATATGGTGGTGGGTTGCGGCTCGA GGAAAGTACACTGGTCCTCAAACTAATGATATCATACGAGAAATTCCCACCGAGGACGATGGCGACGATTCCGAA GAGTCAGGCGAGATCACTGTTTAG |
| Gene | >Pro_DTO377G3_2|g2601.t1 ATGTCAACATCGTCTCCAGGGCTTTGTCCTCGTCTCAGCGCCTTAGGCAAAGCAATTCATCCTTGTATGGCTTGG CCGTTTTTCGAGGTCCAATTTACGCTTATCATATTCTCTCCAATCACGTCAGATCTCTAATCCTGGCTCCGGCTC AAGCTCCTTAGGATACATCTTTTTCTGGCGTGTTCGACTCACCGTACTTTTCCCGTGCTTGATGGCTCCCCTCTA GTCCGGTTTCCTGAACCGACGACCCCTGCTCTTTACACCGTAGATATAATACAAGACTTCTGTAAGTTCCGGCAT TTCTCTTTTCTTTTTCCCACCTTATCTTTGCCCCTCAAGCTCCTTGCATACATATATATGCATTGGTCGTATACC TACTCCTTATCATGGACCTGACCGCAAAACCAGACCCGGATCGCAAACATCAGACAGAAGGAGTAGATACACCAG CCCCTCTTCAACCTACAATGGCTACTATTCACGATGATGATGAGCTGTTGTTGGCCCGCATTGGCTATAAACAGG TATTGGCGCCCAACACCTGGTGGGGATCATAGCGGGGCACAATCTGATAACAATCATCCTGAACTAGGAGTTACG ACGAGAGTTCTCCAAATGGTCGACTGTCTCATATGCCATCTCTATTCTTGGAGTCCTTGGCTCCGTGCCGGCGAC ATTCGGTGCGCCGTTGTCAGCTGGCGGTCCAGCAACAGCTGTATGGTGTTGGTTGATCGGTTCATGCATGGCTAT GTGCATTGGAAGCTCCGTGGCAGAGTTAGTATCGGCATATCCCACAGCCGGAGGGATGTACTTTGTCACAAAGCA GGTCGTGCCTCCCGATCAGGTCCCAATTTTCTCCTGGATCCAGGGCTGGTGTAACCTCCTTGGACAGACCGCAGG AGTCTCCAGTGTGGCATACACGGTCAGTCAAATGTTGCTAGCCTGTGTCAGTATGAATTCGGATCTTGTAGATGG CAAGTATTCGTATGCACCGTAAGTCAACTAGCCCGAATCGCTACGTTTCTAAGCTGATATATTCAAGGACGGCGC TGGAGACCGTTCTAGTATCAATCGCAGTTCTATGTATTCTTGGGGTGATTTGTTCGTTGACTACGAAATCACTAC ATCGAATTATCCTATGGTTTGCTCCCATAAACAGTGTGTATCAAGAGAACTTCGTCGTCTGACTTGTACTAATGA ATTCACAGTTGGGGCGACTATCTGCATATGCATTGCGCTGCTTACTCTTACCCCTAATTTACAGCCAGCCTCTTG GGTCTTCGGTCATTTCACTGATGGCTCAGGATGGGGCTCAAAAGTCTTTTCTTTTTTCCTGGGCTTTTTATCTGT TGCATGGACAATGACCGACTACGATGGAACGACACAGTATGCGACTCTGAAATTCTCTATTAATTCATATTCTAA CCTTTCATCTTTATTATAGTATGTCTGAAGAGACCCATGATGCCGCCGTGCGAGGACCAGTTGCTATCCAGACAG CCGTCTTGGTATCCGGGGCACTCGGGTGGCTCCTAACCGTCTCAATGTGTTTTTGTTTGACCGATTTCGAGGGAA TTCTAACCTCCCCTACCGGTCTTCCCGCAGCCCAGATCTTCCTCAATGCCGGTGGGAAACGAGGTGGCACAGTTA TGTGGGCATTTGCCATTTTGGTCCAATTCTTCACAGGCTGTTCAGCTATGTTAGCAGATACGAGAATGGCCTATG CCTTTGCGCGAGACGATGCGCTTCCATTTTCAAAGTAGGATTTTCTTACCTTTGCACCCGATTGAAACTCCGCAC TGATACATTATAGGTACCTTTCCAAGGTCAATCCTCGGACTCATACCCCGGTCAATGCAGTGTGGTTCGTGGTTT TCTTCAGCGTAGGCTTGAACTGCATCGCTATCGGCTCCACGCAAACGGCAACCGCAATATTCAACATCACTGCCC CTGCACTAGACATCTCTTACGTGTCTGTCATTCTCGCCCACCAGCTCTATAAATCGAAGGTCAAATTCATCGAGG GCCCTTTTACGCTGGGCAGATGGGGTACTTCTATTAACTATATTGCTGTTGTCTGGGTCTTGTTCATCAGTACAA TTCTTTTCTTCCCGCCACAGCTTCCTGTGACACCCGCAAATATGTAAGGCGCTTGAACCCGGTTTATATTCAGGT ATGAAAAGGTATACTAACATGACTCTACCTAGGAATTACGCCATCTGTGTTGGCGGCTTTATTGCCGCTTTTGCT TTGATATGGTGGTGGGTTGCGGCTCGAGGGTAAGAAACATCTAAAATTAACTTATACTTCCAGCATCATTCAGGT GGATACTGACATGGCCTCCTTTATTTCTGCAGAAAGTACACTGGTCCTCAAACTAATGATATCATACGAGAAATT CCCACCGAGGACGATGGCGACGATTCCGAAGAGTCAGGCGAGATCACTGTTTAG |