Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2595.t1
Gene name
Locationscaffold_03:434548..437357
Strand-
Gene length (bp)2809
Transcript length (bp)2574
Coding sequence length (bp)2574
Protein length (aa) 858

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.5E-08 370 433

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 14 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 43.54 26.43 60.65
5d_25C Five days - 25 degrees Celsius 61.29 37.42 85.16
7d_25C Seven days - 25 degrees Celsius 62.11 37.87 86.35
10d_25C Ten days - 25 degrees Celsius 84.68 51.24 118.13
7d_15C Seven days - 15 degrees Celsius 56.83 34.65 79.02
7d_30C Seven days - 30 degrees Celsius 73.96 45.20 102.71

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.125542 no
3d_25C 7d_25C 0.105414 no
3d_25C 7d_15C 0.255101 no
3d_25C 7d_30C 0.008133 yes
3d_25C 10d_25C 0.001278 yes
5d_25C 7d_25C 0.971665 no
5d_25C 7d_15C 0.800085 no
5d_25C 7d_30C 0.456346 no
5d_25C 10d_25C 0.150197 no
7d_25C 7d_15C 0.763388 no
7d_25C 7d_30C 0.492912 no
7d_25C 10d_25C 0.168208 no
7d_15C 7d_30C 0.258157 no
7d_15C 10d_25C 0.063332 no
7d_30C 10d_25C 0.625078 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2595.t1
MTPSPPDEALHFRGKTLTPESPRPLHIPEPSNIPVLENQMDPVFNDTSTYERSVYKQAPQTHDGWLHGGSKDGQG
GPSQTQGAGSFHGSQPNRGVQNEMIASAYYSPPNPASGSENTGHLGSGLSPPDSTYSHTAPVAPVSQGFATGSEV
DPAHKPEQSRMSDRLIAEERVGHKAGGVNFQQLLDNLSRPNPGATIPVTSSAGHSSLHQAPAGESLKSQGIPAHP
QAQSHDSVQAHYMPNGEVAYHQLPSAHDAAATASPAYSAQPSNTQAQTQPQPIDTSSSGGASVNLPPPIATFPQP
PSTCAEPHGSLQEPSVASKKGRAEKRSIKPADDDSPWGPEIQKKYDEFLHDERIYVTEGLWDRFPVGSRLFVGNL
PTERVTKRDMFHIFHDYGKLAQISIKQAYGFIQFLEASSCHEALSNEQGAVVRGRKIHLEISKPQRSTRPAQASE
DSRAPPPRRSRSPEFNRAPPGRTNARAPVDRYDRSKPYETNRVPFSDFRDEPSHRSRRDDYRPPRSPSPRPFRGS
RDGYRSRDRTPERFDRRERRRSRSPRSSRSPYSRDRRYRSISPRPRGIYEGEADLPVPRRAQRDVPEVQLLVLEE
LDRNFVLHVENAFRNRGLRVDVLVLGPRIPLGAAVHRQFIEGVLAVVRLSRPNQVSRKIPLQLFDRTAGLDNVRF
LDYPELEPNMSAELLSHQSQAMQRGAAPTAFAPNPGFIIPPAQPMSVPQPGLSALSNPPNIANLISSLDGPSLST
LLSALQRPPHSQPVSATQSPFSSPNPPPADLASLLTNAHRPQPMQTTAQQPLPHPPFNLQPVNAPVITDPTLLSF
LAKGLGGQQQQGQGPVGAQVQNLMQHLAKWKQ*
Coding >Pro_DTO377G3_2|g2595.t1
ATGACGCCCAGTCCCCCCGATGAAGCGCTTCACTTTCGCGGAAAGACTCTGACCCCGGAAAGCCCTCGACCCCTA
CACATCCCAGAGCCATCCAATATCCCAGTTTTAGAGAACCAAATGGACCCCGTCTTCAACGATACCTCCACCTAT
GAACGCTCGGTGTATAAACAGGCCCCGCAAACACACGATGGATGGTTGCACGGAGGATCAAAAGATGGTCAGGGG
GGACCGAGTCAGACCCAAGGTGCTGGTAGTTTTCATGGCTCGCAGCCGAATCGTGGGGTGCAGAATGAAATGATT
GCTTCTGCATACTATTCTCCTCCCAACCCAGCGTCCGGGTCGGAAAACACCGGCCATCTGGGCTCTGGTCTTTCT
CCTCCCGATTCCACTTATTCCCACACTGCTCCGGTTGCTCCGGTATCCCAAGGCTTTGCCACTGGGAGCGAAGTA
GACCCTGCCCACAAACCGGAGCAGTCAAGGATGTCGGACCGCCTAATTGCTGAGGAGCGTGTGGGACATAAGGCG
GGAGGTGTCAATTTCCAGCAACTCCTCGACAACCTTTCTCGCCCCAACCCTGGTGCAACTATTCCCGTCACTTCT
TCGGCTGGGCACTCGTCTCTCCACCAAGCGCCCGCTGGCGAGTCCCTCAAATCCCAGGGCATCCCCGCCCACCCT
CAAGCCCAAAGCCACGATTCTGTCCAGGCCCATTATATGCCAAATGGCGAGGTGGCATATCACCAACTTCCGTCT
GCCCATGATGCTGCTGCCACTGCATCGCCTGCCTACTCAGCCCAACCTAGTAATACCCAAGCCCAAACCCAGCCT
CAGCCGATTGACACTTCTTCTTCTGGAGGTGCCTCGGTCAATCTACCTCCTCCTATTGCCACTTTCCCGCAACCC
CCATCTACCTGTGCCGAACCTCATGGCTCCTTGCAAGAGCCTTCTGTAGCCTCCAAGAAAGGCCGTGCTGAAAAG
CGGTCCATCAAGCCCGCTGACGATGATTCGCCATGGGGTCCAGAGATTCAAAAGAAATATGACGAGTTCCTGCAC
GATGAGCGGATCTATGTGACGGAAGGTCTTTGGGATCGGTTCCCCGTGGGCTCCAGGCTGTTTGTTGGAAACCTC
CCTACCGAAAGAGTCACCAAGCGAGACATGTTCCATATCTTCCATGATTACGGCAAACTAGCTCAGATATCGATC
AAGCAGGCGTACGGCTTCATACAGTTTCTGGAGGCGAGTTCTTGCCATGAGGCTCTCAGCAACGAACAGGGAGCC
GTCGTGCGGGGCAGGAAGATACATCTTGAAATCTCAAAGCCTCAGCGATCGACGCGGCCCGCTCAAGCATCCGAA
GATTCCCGTGCACCGCCACCACGTCGGTCCCGATCACCGGAGTTCAACCGTGCCCCTCCTGGGCGAACTAACGCC
CGGGCCCCCGTCGATCGATACGACCGATCTAAGCCATATGAAACAAATCGGGTTCCATTCAGCGATTTCCGGGAT
GAGCCCTCTCACCGCAGTCGACGTGACGATTATCGCCCGCCGCGCTCACCATCCCCTCGACCATTTCGGGGGTCT
AGAGATGGGTATCGGTCGCGCGATAGAACTCCAGAAAGATTTGATCGCCGCGAGCGAAGGCGCTCCCGCTCTCCA
CGTTCTTCTCGCTCTCCTTATTCCAGAGATCGACGTTACCGCAGCATCAGCCCCCGGCCACGTGGGATCTATGAA
GGTGAGGCGGATTTACCCGTGCCTCGACGAGCTCAGCGAGATGTACCAGAGGTGCAGCTCCTCGTGCTGGAGGAA
CTCGATAGAAACTTCGTTCTTCATGTAGAGAACGCTTTCCGCAACCGTGGATTACGAGTCGATGTCCTGGTGCTT
GGTCCACGGATCCCTCTTGGCGCCGCTGTGCATCGTCAGTTTATTGAAGGCGTTCTTGCGGTTGTCCGCCTCTCT
CGTCCGAATCAAGTCTCTCGAAAGATTCCTCTGCAACTATTTGATCGAACCGCTGGATTAGATAACGTCCGCTTC
CTTGATTACCCTGAGCTTGAGCCTAATATGTCTGCTGAGCTCCTGAGCCACCAATCCCAAGCGATGCAGCGAGGA
GCAGCCCCAACCGCATTTGCACCCAACCCTGGTTTCATTATCCCTCCAGCACAGCCCATGTCGGTTCCTCAACCT
GGCTTGTCTGCGCTTTCGAATCCACCCAACATTGCGAACCTCATTAGTTCACTGGATGGCCCTAGTCTTTCAACT
CTCTTATCGGCACTCCAGCGACCTCCCCATTCGCAACCTGTGTCTGCTACTCAGTCGCCCTTCTCCTCACCGAAC
CCACCTCCGGCCGACCTCGCCAGTCTCCTGACCAACGCACATCGGCCCCAACCCATGCAAACTACCGCACAGCAA
CCCCTTCCTCACCCACCCTTCAATCTCCAACCTGTAAATGCACCCGTCATCACTGATCCAACCTTACTCTCGTTC
TTGGCCAAAGGACTGGGTGGACAACAGCAGCAGGGCCAGGGACCCGTCGGTGCTCAGGTACAGAACCTGATGCAG
CACCTCGCTAAATGGAAGCAATGA
Transcript >Pro_DTO377G3_2|g2595.t1
ATGACGCCCAGTCCCCCCGATGAAGCGCTTCACTTTCGCGGAAAGACTCTGACCCCGGAAAGCCCTCGACCCCTA
CACATCCCAGAGCCATCCAATATCCCAGTTTTAGAGAACCAAATGGACCCCGTCTTCAACGATACCTCCACCTAT
GAACGCTCGGTGTATAAACAGGCCCCGCAAACACACGATGGATGGTTGCACGGAGGATCAAAAGATGGTCAGGGG
GGACCGAGTCAGACCCAAGGTGCTGGTAGTTTTCATGGCTCGCAGCCGAATCGTGGGGTGCAGAATGAAATGATT
GCTTCTGCATACTATTCTCCTCCCAACCCAGCGTCCGGGTCGGAAAACACCGGCCATCTGGGCTCTGGTCTTTCT
CCTCCCGATTCCACTTATTCCCACACTGCTCCGGTTGCTCCGGTATCCCAAGGCTTTGCCACTGGGAGCGAAGTA
GACCCTGCCCACAAACCGGAGCAGTCAAGGATGTCGGACCGCCTAATTGCTGAGGAGCGTGTGGGACATAAGGCG
GGAGGTGTCAATTTCCAGCAACTCCTCGACAACCTTTCTCGCCCCAACCCTGGTGCAACTATTCCCGTCACTTCT
TCGGCTGGGCACTCGTCTCTCCACCAAGCGCCCGCTGGCGAGTCCCTCAAATCCCAGGGCATCCCCGCCCACCCT
CAAGCCCAAAGCCACGATTCTGTCCAGGCCCATTATATGCCAAATGGCGAGGTGGCATATCACCAACTTCCGTCT
GCCCATGATGCTGCTGCCACTGCATCGCCTGCCTACTCAGCCCAACCTAGTAATACCCAAGCCCAAACCCAGCCT
CAGCCGATTGACACTTCTTCTTCTGGAGGTGCCTCGGTCAATCTACCTCCTCCTATTGCCACTTTCCCGCAACCC
CCATCTACCTGTGCCGAACCTCATGGCTCCTTGCAAGAGCCTTCTGTAGCCTCCAAGAAAGGCCGTGCTGAAAAG
CGGTCCATCAAGCCCGCTGACGATGATTCGCCATGGGGTCCAGAGATTCAAAAGAAATATGACGAGTTCCTGCAC
GATGAGCGGATCTATGTGACGGAAGGTCTTTGGGATCGGTTCCCCGTGGGCTCCAGGCTGTTTGTTGGAAACCTC
CCTACCGAAAGAGTCACCAAGCGAGACATGTTCCATATCTTCCATGATTACGGCAAACTAGCTCAGATATCGATC
AAGCAGGCGTACGGCTTCATACAGTTTCTGGAGGCGAGTTCTTGCCATGAGGCTCTCAGCAACGAACAGGGAGCC
GTCGTGCGGGGCAGGAAGATACATCTTGAAATCTCAAAGCCTCAGCGATCGACGCGGCCCGCTCAAGCATCCGAA
GATTCCCGTGCACCGCCACCACGTCGGTCCCGATCACCGGAGTTCAACCGTGCCCCTCCTGGGCGAACTAACGCC
CGGGCCCCCGTCGATCGATACGACCGATCTAAGCCATATGAAACAAATCGGGTTCCATTCAGCGATTTCCGGGAT
GAGCCCTCTCACCGCAGTCGACGTGACGATTATCGCCCGCCGCGCTCACCATCCCCTCGACCATTTCGGGGGTCT
AGAGATGGGTATCGGTCGCGCGATAGAACTCCAGAAAGATTTGATCGCCGCGAGCGAAGGCGCTCCCGCTCTCCA
CGTTCTTCTCGCTCTCCTTATTCCAGAGATCGACGTTACCGCAGCATCAGCCCCCGGCCACGTGGGATCTATGAA
GGTGAGGCGGATTTACCCGTGCCTCGACGAGCTCAGCGAGATGTACCAGAGGTGCAGCTCCTCGTGCTGGAGGAA
CTCGATAGAAACTTCGTTCTTCATGTAGAGAACGCTTTCCGCAACCGTGGATTACGAGTCGATGTCCTGGTGCTT
GGTCCACGGATCCCTCTTGGCGCCGCTGTGCATCGTCAGTTTATTGAAGGCGTTCTTGCGGTTGTCCGCCTCTCT
CGTCCGAATCAAGTCTCTCGAAAGATTCCTCTGCAACTATTTGATCGAACCGCTGGATTAGATAACGTCCGCTTC
CTTGATTACCCTGAGCTTGAGCCTAATATGTCTGCTGAGCTCCTGAGCCACCAATCCCAAGCGATGCAGCGAGGA
GCAGCCCCAACCGCATTTGCACCCAACCCTGGTTTCATTATCCCTCCAGCACAGCCCATGTCGGTTCCTCAACCT
GGCTTGTCTGCGCTTTCGAATCCACCCAACATTGCGAACCTCATTAGTTCACTGGATGGCCCTAGTCTTTCAACT
CTCTTATCGGCACTCCAGCGACCTCCCCATTCGCAACCTGTGTCTGCTACTCAGTCGCCCTTCTCCTCACCGAAC
CCACCTCCGGCCGACCTCGCCAGTCTCCTGACCAACGCACATCGGCCCCAACCCATGCAAACTACCGCACAGCAA
CCCCTTCCTCACCCACCCTTCAATCTCCAACCTGTAAATGCACCCGTCATCACTGATCCAACCTTACTCTCGTTC
TTGGCCAAAGGACTGGGTGGACAACAGCAGCAGGGCCAGGGACCCGTCGGTGCTCAGGTACAGAACCTGATGCAG
CACCTCGCTAAATGGAAGCAATGA
Gene >Pro_DTO377G3_2|g2595.t1
ATGACGCCCAGTCCCCCCGATGAAGCGCTTCACTTTCGCGGAAAGACTCTGACCCCGGAAAGCCCTCGACCCCTA
CACATCCCAGAGCCATCCAATATCCCAGTTTTAGAGAACCAAATGGACCCCGTCTTCAACGATACCTCCACCTAT
GAACGCTCGGTGTATAAACAGGCCCCGCAAACACACGATGGATGGTTGCACGGAGGATCAAAAGATGGTCAGGGG
GGACCGAGTCAGACCCAAGGTGCTGGTAGTTTTCATGGCTCGCAGCCGAATCGTGGGGTGCAGAATGAAATGATT
GCTTCTGCATACTATTCTCCTCCCAACCCAGCGTCCGGGTCGGAAAACACCGGCCATCTGGGCTCTGGTCTTTCT
CCTCCCGATTCCACTTATTCCCACACTGCTCCGGTTGCTCCGGTATCCCAAGGCTTTGCCACTGGGAGCGAAGTA
GACCCTGCCCACAAACCGGAGCAGTCAAGGATGTCGGACCGCCTAATTGCTGAGGAGCGTGTGGGACATAAGGCG
GGAGGTGTCAATTTCCAGCAACTCCTCGACAACCTTTCTCGCCCCAACCCTGGTGCAACTATTCCCGTCACTTCT
TCGGCTGGGCACTCGTCTCTCCACCAAGCGCCCGCTGGCGAGTCCCTCAAATCCCAGGGCATCCCCGCCCACCCT
CAAGCCCAAAGCCACGATTCTGTCCAGGCCCATTATATGCCAAATGGCGAGGTGGCATATCACCAACTTCCGTCT
GCCCATGATGCTGCTGCCACTGCATCGCCTGCCTACTCAGCCCAACCTAGTAATACCCAAGCCCAAACCCAGCCT
CAGCCGATTGACACTTCTTCTTCTGGAGGTGCCTCGGTCAATCTACCTCCTCCTATTGCCACTTTCCCGCAACCC
CCATCTACCTGTGCCGAACCTCATGGCTCCTTGCAAGAGCCTTCTGTAGCCTCCAAGAAAGGCCGTGCTGAAAAG
CGGTCCATCAAGCCCGCTGACGATGATTCGCCATGGGGTCCAGAGATTCAAAAGAAATATGACGAGTTCCTGCAC
GATGAGCGGATCTATGTGACGGAAGGTCTTTGGGATCGGTTCCCCGTGGGCTCCAGGCTGTTTGTTGGTCAGTAT
TGTTTCCGCTTATGTCTACTCTTCGTCGATCTAACATTCTCATCATGTGCAGGAAACCTCCCTACCGAAAGAGTC
ACCAAGCGAGACATGTTCCATATCTTCCATGATTACGGCAAACTAGCTCAGATATCGATCAAGCAGGCGTACGGC
TTCATACAGTTTCTGGAGGCGAGTTCTTGCCATGAGGCTCTCAGCAACGAACAGGGAGCCGTCGTGCGGGGCAGG
AAGATACGTGAGTTACTGGAGCCATAGCTCAACAATTCTTCTCTCAAGGAAAGACCTAACCGTTCTCAGATCTTG
AAATCTCAAAGCCTCAGCGATCGACGCGGCCCGCTCAAGCATCCGAAGATTCCCGTGCACCGCCACCACGTCGGT
CCCGATCACCGGAGTTCAACCGTGCCCCTCCTGGGCGAACTAACGCCCGGGCCCCCGTCGATCGATACGACCGAT
CTAAGCCATATGAAACAAATCGGGTTCCATTCAGCGATTTCCGGGATGAGCCCTCTCACCGCAGTCGACGTGACG
ATTATCGCCCGCCGCGCTCACCATCCCCTCGACCATTTCGGGGGTCTAGAGATGGGTATCGGTCGCGCGATAGAA
CTCCAGAAAGATTTGATCGCCGCGAGCGAAGGCGCTCCCGCTCTCCACGTTCTTCTCGCTCTCCTTATTCCAGAG
ATCGACGTTACCGCAGCATCAGCCCCCGGCCACGTGGGATCTATGAAGGTGAGGCGGATTTACCCGTGCCTCGAC
GAGCTCAGCGAGATGTACCAGAGGTGCAGCTCCTCGTGCTGGAGGAACTCGATAGGTTAGTTGAATCCCTTGATG
TCTGTTTAGACAAAGTCGCTGACATTGCGAAGAAACTTCGTTCTTCATGTAGAGAACGCTTTCCGCAACCGTGGA
TTACGAGTCGATGTCCTGGTGCTTGGTCCACGGATCCCTCTTGGCGCCGCTGTGCATCGTCAGTTTATTGAAGGC
GTTCTTGCGGTTGTCCGCCTCTCTCGTCCGAATCAAGTCTCTCGAAAGATTCCTCTGCAACTATTTGATCGAACC
GCTGGATTAGATAACGTCCGCTTCCTTGGTAAGCGCATTCTGTGTTCGCCTCTTCATCGACGCCTTGCTCATCTT
TCTTTCCCATATAGATTACCCTGAGCTTGAGCCTAATATGTCTGCTGAGCTCCTGAGCCACCAATCCCAAGCGAT
GCAGCGAGGAGCAGCCCCAACCGCATTTGCACCCAACCCTGGTTTCATTATCCCTCCAGCACAGCCCATGTCGGT
TCCTCAACCTGGCTTGTCTGCGCTTTCGAATCCACCCAACATTGCGAACCTCATTAGTTCACTGGATGGCCCTAG
TCTTTCAACTCTCTTATCGGCACTCCAGCGACCTCCCCATTCGCAACCTGTGTCTGCTACTCAGTCGCCCTTCTC
CTCACCGAACCCACCTCCGGCCGACCTCGCCAGTCTCCTGACCAACGCACATCGGCCCCAACCCATGCAAACTAC
CGCACAGCAACCCCTTCCTCACCCACCCTTCAATCTCCAACCTGTAAATGCACCCGTCATCACTGATCCAACCTT
ACTCTCGTTCTTGGCCAAAGGACTGGGTGGACAACAGCAGCAGGGCCAGGGACCCGTCGGTGCTCAGGTACAGAA
CCTGATGCAGCACCTCGCTAAATGGAAGCAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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