Protein ID | Pro_DTO377G3_2|g2595.t1 |
Gene name | |
Location | scaffold_03:434548..437357 |
Strand | - |
Gene length (bp) | 2809 |
Transcript length (bp) | 2574 |
Coding sequence length (bp) | 2574 |
Protein length (aa) | 858 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.5E-08 | 370 | 433 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003723 | RNA binding | Yes |
GO:0097159 | organic cyclic compound binding | No |
GO:0005488 | binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 14 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 43.54 | 26.43 | 60.65 |
5d_25C | Five days - 25 degrees Celsius | 61.29 | 37.42 | 85.16 |
7d_25C | Seven days - 25 degrees Celsius | 62.11 | 37.87 | 86.35 |
10d_25C | Ten days - 25 degrees Celsius | 84.68 | 51.24 | 118.13 |
7d_15C | Seven days - 15 degrees Celsius | 56.83 | 34.65 | 79.02 |
7d_30C | Seven days - 30 degrees Celsius | 73.96 | 45.20 | 102.71 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.125542 | no |
3d_25C | 7d_25C | 0.105414 | no |
3d_25C | 7d_15C | 0.255101 | no |
3d_25C | 7d_30C | 0.008133 | yes |
3d_25C | 10d_25C | 0.001278 | yes |
5d_25C | 7d_25C | 0.971665 | no |
5d_25C | 7d_15C | 0.800085 | no |
5d_25C | 7d_30C | 0.456346 | no |
5d_25C | 10d_25C | 0.150197 | no |
7d_25C | 7d_15C | 0.763388 | no |
7d_25C | 7d_30C | 0.492912 | no |
7d_25C | 10d_25C | 0.168208 | no |
7d_15C | 7d_30C | 0.258157 | no |
7d_15C | 10d_25C | 0.063332 | no |
7d_30C | 10d_25C | 0.625078 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g2595.t1 MTPSPPDEALHFRGKTLTPESPRPLHIPEPSNIPVLENQMDPVFNDTSTYERSVYKQAPQTHDGWLHGGSKDGQG GPSQTQGAGSFHGSQPNRGVQNEMIASAYYSPPNPASGSENTGHLGSGLSPPDSTYSHTAPVAPVSQGFATGSEV DPAHKPEQSRMSDRLIAEERVGHKAGGVNFQQLLDNLSRPNPGATIPVTSSAGHSSLHQAPAGESLKSQGIPAHP QAQSHDSVQAHYMPNGEVAYHQLPSAHDAAATASPAYSAQPSNTQAQTQPQPIDTSSSGGASVNLPPPIATFPQP PSTCAEPHGSLQEPSVASKKGRAEKRSIKPADDDSPWGPEIQKKYDEFLHDERIYVTEGLWDRFPVGSRLFVGNL PTERVTKRDMFHIFHDYGKLAQISIKQAYGFIQFLEASSCHEALSNEQGAVVRGRKIHLEISKPQRSTRPAQASE DSRAPPPRRSRSPEFNRAPPGRTNARAPVDRYDRSKPYETNRVPFSDFRDEPSHRSRRDDYRPPRSPSPRPFRGS RDGYRSRDRTPERFDRRERRRSRSPRSSRSPYSRDRRYRSISPRPRGIYEGEADLPVPRRAQRDVPEVQLLVLEE LDRNFVLHVENAFRNRGLRVDVLVLGPRIPLGAAVHRQFIEGVLAVVRLSRPNQVSRKIPLQLFDRTAGLDNVRF LDYPELEPNMSAELLSHQSQAMQRGAAPTAFAPNPGFIIPPAQPMSVPQPGLSALSNPPNIANLISSLDGPSLST LLSALQRPPHSQPVSATQSPFSSPNPPPADLASLLTNAHRPQPMQTTAQQPLPHPPFNLQPVNAPVITDPTLLSF LAKGLGGQQQQGQGPVGAQVQNLMQHLAKWKQ* |
Coding | >Pro_DTO377G3_2|g2595.t1 ATGACGCCCAGTCCCCCCGATGAAGCGCTTCACTTTCGCGGAAAGACTCTGACCCCGGAAAGCCCTCGACCCCTA CACATCCCAGAGCCATCCAATATCCCAGTTTTAGAGAACCAAATGGACCCCGTCTTCAACGATACCTCCACCTAT GAACGCTCGGTGTATAAACAGGCCCCGCAAACACACGATGGATGGTTGCACGGAGGATCAAAAGATGGTCAGGGG GGACCGAGTCAGACCCAAGGTGCTGGTAGTTTTCATGGCTCGCAGCCGAATCGTGGGGTGCAGAATGAAATGATT GCTTCTGCATACTATTCTCCTCCCAACCCAGCGTCCGGGTCGGAAAACACCGGCCATCTGGGCTCTGGTCTTTCT CCTCCCGATTCCACTTATTCCCACACTGCTCCGGTTGCTCCGGTATCCCAAGGCTTTGCCACTGGGAGCGAAGTA GACCCTGCCCACAAACCGGAGCAGTCAAGGATGTCGGACCGCCTAATTGCTGAGGAGCGTGTGGGACATAAGGCG GGAGGTGTCAATTTCCAGCAACTCCTCGACAACCTTTCTCGCCCCAACCCTGGTGCAACTATTCCCGTCACTTCT TCGGCTGGGCACTCGTCTCTCCACCAAGCGCCCGCTGGCGAGTCCCTCAAATCCCAGGGCATCCCCGCCCACCCT CAAGCCCAAAGCCACGATTCTGTCCAGGCCCATTATATGCCAAATGGCGAGGTGGCATATCACCAACTTCCGTCT GCCCATGATGCTGCTGCCACTGCATCGCCTGCCTACTCAGCCCAACCTAGTAATACCCAAGCCCAAACCCAGCCT CAGCCGATTGACACTTCTTCTTCTGGAGGTGCCTCGGTCAATCTACCTCCTCCTATTGCCACTTTCCCGCAACCC CCATCTACCTGTGCCGAACCTCATGGCTCCTTGCAAGAGCCTTCTGTAGCCTCCAAGAAAGGCCGTGCTGAAAAG CGGTCCATCAAGCCCGCTGACGATGATTCGCCATGGGGTCCAGAGATTCAAAAGAAATATGACGAGTTCCTGCAC GATGAGCGGATCTATGTGACGGAAGGTCTTTGGGATCGGTTCCCCGTGGGCTCCAGGCTGTTTGTTGGAAACCTC CCTACCGAAAGAGTCACCAAGCGAGACATGTTCCATATCTTCCATGATTACGGCAAACTAGCTCAGATATCGATC AAGCAGGCGTACGGCTTCATACAGTTTCTGGAGGCGAGTTCTTGCCATGAGGCTCTCAGCAACGAACAGGGAGCC GTCGTGCGGGGCAGGAAGATACATCTTGAAATCTCAAAGCCTCAGCGATCGACGCGGCCCGCTCAAGCATCCGAA GATTCCCGTGCACCGCCACCACGTCGGTCCCGATCACCGGAGTTCAACCGTGCCCCTCCTGGGCGAACTAACGCC CGGGCCCCCGTCGATCGATACGACCGATCTAAGCCATATGAAACAAATCGGGTTCCATTCAGCGATTTCCGGGAT GAGCCCTCTCACCGCAGTCGACGTGACGATTATCGCCCGCCGCGCTCACCATCCCCTCGACCATTTCGGGGGTCT AGAGATGGGTATCGGTCGCGCGATAGAACTCCAGAAAGATTTGATCGCCGCGAGCGAAGGCGCTCCCGCTCTCCA CGTTCTTCTCGCTCTCCTTATTCCAGAGATCGACGTTACCGCAGCATCAGCCCCCGGCCACGTGGGATCTATGAA GGTGAGGCGGATTTACCCGTGCCTCGACGAGCTCAGCGAGATGTACCAGAGGTGCAGCTCCTCGTGCTGGAGGAA CTCGATAGAAACTTCGTTCTTCATGTAGAGAACGCTTTCCGCAACCGTGGATTACGAGTCGATGTCCTGGTGCTT GGTCCACGGATCCCTCTTGGCGCCGCTGTGCATCGTCAGTTTATTGAAGGCGTTCTTGCGGTTGTCCGCCTCTCT CGTCCGAATCAAGTCTCTCGAAAGATTCCTCTGCAACTATTTGATCGAACCGCTGGATTAGATAACGTCCGCTTC CTTGATTACCCTGAGCTTGAGCCTAATATGTCTGCTGAGCTCCTGAGCCACCAATCCCAAGCGATGCAGCGAGGA GCAGCCCCAACCGCATTTGCACCCAACCCTGGTTTCATTATCCCTCCAGCACAGCCCATGTCGGTTCCTCAACCT GGCTTGTCTGCGCTTTCGAATCCACCCAACATTGCGAACCTCATTAGTTCACTGGATGGCCCTAGTCTTTCAACT CTCTTATCGGCACTCCAGCGACCTCCCCATTCGCAACCTGTGTCTGCTACTCAGTCGCCCTTCTCCTCACCGAAC CCACCTCCGGCCGACCTCGCCAGTCTCCTGACCAACGCACATCGGCCCCAACCCATGCAAACTACCGCACAGCAA CCCCTTCCTCACCCACCCTTCAATCTCCAACCTGTAAATGCACCCGTCATCACTGATCCAACCTTACTCTCGTTC TTGGCCAAAGGACTGGGTGGACAACAGCAGCAGGGCCAGGGACCCGTCGGTGCTCAGGTACAGAACCTGATGCAG CACCTCGCTAAATGGAAGCAATGA |
Transcript | >Pro_DTO377G3_2|g2595.t1 ATGACGCCCAGTCCCCCCGATGAAGCGCTTCACTTTCGCGGAAAGACTCTGACCCCGGAAAGCCCTCGACCCCTA CACATCCCAGAGCCATCCAATATCCCAGTTTTAGAGAACCAAATGGACCCCGTCTTCAACGATACCTCCACCTAT GAACGCTCGGTGTATAAACAGGCCCCGCAAACACACGATGGATGGTTGCACGGAGGATCAAAAGATGGTCAGGGG GGACCGAGTCAGACCCAAGGTGCTGGTAGTTTTCATGGCTCGCAGCCGAATCGTGGGGTGCAGAATGAAATGATT GCTTCTGCATACTATTCTCCTCCCAACCCAGCGTCCGGGTCGGAAAACACCGGCCATCTGGGCTCTGGTCTTTCT CCTCCCGATTCCACTTATTCCCACACTGCTCCGGTTGCTCCGGTATCCCAAGGCTTTGCCACTGGGAGCGAAGTA GACCCTGCCCACAAACCGGAGCAGTCAAGGATGTCGGACCGCCTAATTGCTGAGGAGCGTGTGGGACATAAGGCG GGAGGTGTCAATTTCCAGCAACTCCTCGACAACCTTTCTCGCCCCAACCCTGGTGCAACTATTCCCGTCACTTCT TCGGCTGGGCACTCGTCTCTCCACCAAGCGCCCGCTGGCGAGTCCCTCAAATCCCAGGGCATCCCCGCCCACCCT CAAGCCCAAAGCCACGATTCTGTCCAGGCCCATTATATGCCAAATGGCGAGGTGGCATATCACCAACTTCCGTCT GCCCATGATGCTGCTGCCACTGCATCGCCTGCCTACTCAGCCCAACCTAGTAATACCCAAGCCCAAACCCAGCCT CAGCCGATTGACACTTCTTCTTCTGGAGGTGCCTCGGTCAATCTACCTCCTCCTATTGCCACTTTCCCGCAACCC CCATCTACCTGTGCCGAACCTCATGGCTCCTTGCAAGAGCCTTCTGTAGCCTCCAAGAAAGGCCGTGCTGAAAAG CGGTCCATCAAGCCCGCTGACGATGATTCGCCATGGGGTCCAGAGATTCAAAAGAAATATGACGAGTTCCTGCAC GATGAGCGGATCTATGTGACGGAAGGTCTTTGGGATCGGTTCCCCGTGGGCTCCAGGCTGTTTGTTGGAAACCTC CCTACCGAAAGAGTCACCAAGCGAGACATGTTCCATATCTTCCATGATTACGGCAAACTAGCTCAGATATCGATC AAGCAGGCGTACGGCTTCATACAGTTTCTGGAGGCGAGTTCTTGCCATGAGGCTCTCAGCAACGAACAGGGAGCC GTCGTGCGGGGCAGGAAGATACATCTTGAAATCTCAAAGCCTCAGCGATCGACGCGGCCCGCTCAAGCATCCGAA GATTCCCGTGCACCGCCACCACGTCGGTCCCGATCACCGGAGTTCAACCGTGCCCCTCCTGGGCGAACTAACGCC CGGGCCCCCGTCGATCGATACGACCGATCTAAGCCATATGAAACAAATCGGGTTCCATTCAGCGATTTCCGGGAT GAGCCCTCTCACCGCAGTCGACGTGACGATTATCGCCCGCCGCGCTCACCATCCCCTCGACCATTTCGGGGGTCT AGAGATGGGTATCGGTCGCGCGATAGAACTCCAGAAAGATTTGATCGCCGCGAGCGAAGGCGCTCCCGCTCTCCA CGTTCTTCTCGCTCTCCTTATTCCAGAGATCGACGTTACCGCAGCATCAGCCCCCGGCCACGTGGGATCTATGAA GGTGAGGCGGATTTACCCGTGCCTCGACGAGCTCAGCGAGATGTACCAGAGGTGCAGCTCCTCGTGCTGGAGGAA CTCGATAGAAACTTCGTTCTTCATGTAGAGAACGCTTTCCGCAACCGTGGATTACGAGTCGATGTCCTGGTGCTT GGTCCACGGATCCCTCTTGGCGCCGCTGTGCATCGTCAGTTTATTGAAGGCGTTCTTGCGGTTGTCCGCCTCTCT CGTCCGAATCAAGTCTCTCGAAAGATTCCTCTGCAACTATTTGATCGAACCGCTGGATTAGATAACGTCCGCTTC CTTGATTACCCTGAGCTTGAGCCTAATATGTCTGCTGAGCTCCTGAGCCACCAATCCCAAGCGATGCAGCGAGGA GCAGCCCCAACCGCATTTGCACCCAACCCTGGTTTCATTATCCCTCCAGCACAGCCCATGTCGGTTCCTCAACCT GGCTTGTCTGCGCTTTCGAATCCACCCAACATTGCGAACCTCATTAGTTCACTGGATGGCCCTAGTCTTTCAACT CTCTTATCGGCACTCCAGCGACCTCCCCATTCGCAACCTGTGTCTGCTACTCAGTCGCCCTTCTCCTCACCGAAC CCACCTCCGGCCGACCTCGCCAGTCTCCTGACCAACGCACATCGGCCCCAACCCATGCAAACTACCGCACAGCAA CCCCTTCCTCACCCACCCTTCAATCTCCAACCTGTAAATGCACCCGTCATCACTGATCCAACCTTACTCTCGTTC TTGGCCAAAGGACTGGGTGGACAACAGCAGCAGGGCCAGGGACCCGTCGGTGCTCAGGTACAGAACCTGATGCAG CACCTCGCTAAATGGAAGCAATGA |
Gene | >Pro_DTO377G3_2|g2595.t1 ATGACGCCCAGTCCCCCCGATGAAGCGCTTCACTTTCGCGGAAAGACTCTGACCCCGGAAAGCCCTCGACCCCTA CACATCCCAGAGCCATCCAATATCCCAGTTTTAGAGAACCAAATGGACCCCGTCTTCAACGATACCTCCACCTAT GAACGCTCGGTGTATAAACAGGCCCCGCAAACACACGATGGATGGTTGCACGGAGGATCAAAAGATGGTCAGGGG GGACCGAGTCAGACCCAAGGTGCTGGTAGTTTTCATGGCTCGCAGCCGAATCGTGGGGTGCAGAATGAAATGATT GCTTCTGCATACTATTCTCCTCCCAACCCAGCGTCCGGGTCGGAAAACACCGGCCATCTGGGCTCTGGTCTTTCT CCTCCCGATTCCACTTATTCCCACACTGCTCCGGTTGCTCCGGTATCCCAAGGCTTTGCCACTGGGAGCGAAGTA GACCCTGCCCACAAACCGGAGCAGTCAAGGATGTCGGACCGCCTAATTGCTGAGGAGCGTGTGGGACATAAGGCG GGAGGTGTCAATTTCCAGCAACTCCTCGACAACCTTTCTCGCCCCAACCCTGGTGCAACTATTCCCGTCACTTCT TCGGCTGGGCACTCGTCTCTCCACCAAGCGCCCGCTGGCGAGTCCCTCAAATCCCAGGGCATCCCCGCCCACCCT CAAGCCCAAAGCCACGATTCTGTCCAGGCCCATTATATGCCAAATGGCGAGGTGGCATATCACCAACTTCCGTCT GCCCATGATGCTGCTGCCACTGCATCGCCTGCCTACTCAGCCCAACCTAGTAATACCCAAGCCCAAACCCAGCCT CAGCCGATTGACACTTCTTCTTCTGGAGGTGCCTCGGTCAATCTACCTCCTCCTATTGCCACTTTCCCGCAACCC CCATCTACCTGTGCCGAACCTCATGGCTCCTTGCAAGAGCCTTCTGTAGCCTCCAAGAAAGGCCGTGCTGAAAAG CGGTCCATCAAGCCCGCTGACGATGATTCGCCATGGGGTCCAGAGATTCAAAAGAAATATGACGAGTTCCTGCAC GATGAGCGGATCTATGTGACGGAAGGTCTTTGGGATCGGTTCCCCGTGGGCTCCAGGCTGTTTGTTGGTCAGTAT TGTTTCCGCTTATGTCTACTCTTCGTCGATCTAACATTCTCATCATGTGCAGGAAACCTCCCTACCGAAAGAGTC ACCAAGCGAGACATGTTCCATATCTTCCATGATTACGGCAAACTAGCTCAGATATCGATCAAGCAGGCGTACGGC TTCATACAGTTTCTGGAGGCGAGTTCTTGCCATGAGGCTCTCAGCAACGAACAGGGAGCCGTCGTGCGGGGCAGG AAGATACGTGAGTTACTGGAGCCATAGCTCAACAATTCTTCTCTCAAGGAAAGACCTAACCGTTCTCAGATCTTG AAATCTCAAAGCCTCAGCGATCGACGCGGCCCGCTCAAGCATCCGAAGATTCCCGTGCACCGCCACCACGTCGGT CCCGATCACCGGAGTTCAACCGTGCCCCTCCTGGGCGAACTAACGCCCGGGCCCCCGTCGATCGATACGACCGAT CTAAGCCATATGAAACAAATCGGGTTCCATTCAGCGATTTCCGGGATGAGCCCTCTCACCGCAGTCGACGTGACG ATTATCGCCCGCCGCGCTCACCATCCCCTCGACCATTTCGGGGGTCTAGAGATGGGTATCGGTCGCGCGATAGAA CTCCAGAAAGATTTGATCGCCGCGAGCGAAGGCGCTCCCGCTCTCCACGTTCTTCTCGCTCTCCTTATTCCAGAG ATCGACGTTACCGCAGCATCAGCCCCCGGCCACGTGGGATCTATGAAGGTGAGGCGGATTTACCCGTGCCTCGAC GAGCTCAGCGAGATGTACCAGAGGTGCAGCTCCTCGTGCTGGAGGAACTCGATAGGTTAGTTGAATCCCTTGATG TCTGTTTAGACAAAGTCGCTGACATTGCGAAGAAACTTCGTTCTTCATGTAGAGAACGCTTTCCGCAACCGTGGA TTACGAGTCGATGTCCTGGTGCTTGGTCCACGGATCCCTCTTGGCGCCGCTGTGCATCGTCAGTTTATTGAAGGC GTTCTTGCGGTTGTCCGCCTCTCTCGTCCGAATCAAGTCTCTCGAAAGATTCCTCTGCAACTATTTGATCGAACC GCTGGATTAGATAACGTCCGCTTCCTTGGTAAGCGCATTCTGTGTTCGCCTCTTCATCGACGCCTTGCTCATCTT TCTTTCCCATATAGATTACCCTGAGCTTGAGCCTAATATGTCTGCTGAGCTCCTGAGCCACCAATCCCAAGCGAT GCAGCGAGGAGCAGCCCCAACCGCATTTGCACCCAACCCTGGTTTCATTATCCCTCCAGCACAGCCCATGTCGGT TCCTCAACCTGGCTTGTCTGCGCTTTCGAATCCACCCAACATTGCGAACCTCATTAGTTCACTGGATGGCCCTAG TCTTTCAACTCTCTTATCGGCACTCCAGCGACCTCCCCATTCGCAACCTGTGTCTGCTACTCAGTCGCCCTTCTC CTCACCGAACCCACCTCCGGCCGACCTCGCCAGTCTCCTGACCAACGCACATCGGCCCCAACCCATGCAAACTAC CGCACAGCAACCCCTTCCTCACCCACCCTTCAATCTCCAACCTGTAAATGCACCCGTCATCACTGATCCAACCTT ACTCTCGTTCTTGGCCAAAGGACTGGGTGGACAACAGCAGCAGGGCCAGGGACCCGTCGGTGCTCAGGTACAGAA CCTGATGCAGCACCTCGCTAAATGGAAGCAATGA |