© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2590.t1 |
| Gene name | |
| Location | scaffold_03:426726..428389 |
| Strand | - |
| Gene length (bp) | 1663 |
| Transcript length (bp) | 1545 |
| Coding sequence length (bp) | 1545 |
| Protein length (aa) | 515 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00067 | p450 | Cytochrome P450 | 1.4E-58 | 45 | 476 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Yes |
| GO:0004497 | monooxygenase activity | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 6.04 | 2.18 | 9.89 |
| 5d_25C | Five days - 25 degrees Celsius | 5.58 | 1.93 | 9.24 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.02 | 1.22 | 6.82 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.00 | 1.09 | 6.91 |
| 7d_15C | Seven days - 15 degrees Celsius | 20.47 | 10.40 | 30.54 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.68 | 0.57 | 4.79 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.885769 | no |
| 3d_25C | 7d_25C | 0.310229 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.039770 | yes |
| 3d_25C | 10d_25C | 0.329188 | no |
| 5d_25C | 7d_25C | 0.429436 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.066129 | no |
| 5d_25C | 10d_25C | 0.446447 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.373742 | no |
| 7d_25C | 10d_25C | 0.992986 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.406329 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2590.t1 MTWILIAAFIVAFLVYQLSVSTLFSPLARIPGPKTFALTKFKLAYEDYKGTRTRKINALHHQYGPVVRIGPSEVT FNSTSAVRAIYGAGSGFERTGFYHMFEVYGRKNMFSFATTKQHGERKKLFAHAYAKSAMLKGQNAQMVEQKVKLY MDLLERDGGKSEIFSTLHYFSLDTITEFLYGSFGKTACLEGQRQDCALIGDIIDIARRKLSWYAVHFPHFTEWLY SRTGVTGCIAKRFYPMQMPTTYSGIRLHALKATQKYASASASAKASTSALISRLWSHHHSQKPNGLDDLDIASEC ADHLLAGIDTTSDTLMFLIWALSRPENRQFQDKLIEEVCNITEDSLDSDGIPKVENSDKLSYLDAVIKETLRLYA PLPGSEPRSLPTATTIDGYTIPPGTVVSISPYALHRNPDVFKNPMKFNPDRWLDPCENLAEMKKWFWAFSSGGRM CIGMHLAMAEMTTLVAAIYRKYRTTPMGDFDTVSPGITGRYEVFYDDTCSRMREHECQIEFTPH* |
| Coding | >Pro_DTO377G3_2|g2590.t1 ATGACTTGGATTCTGATCGCTGCTTTCATAGTAGCCTTTCTTGTCTACCAACTCTCAGTTTCCACTTTGTTTAGC CCTCTTGCACGAATTCCCGGCCCAAAGACTTTCGCCTTGACCAAGTTCAAATTAGCCTATGAGGACTACAAAGGA ACTCGCACGCGAAAGATCAATGCTCTCCATCACCAGTATGGACCTGTCGTTCGTATCGGCCCCAGTGAGGTGACC TTCAACAGCACATCGGCCGTGCGTGCAATCTACGGCGCTGGAAGTGGGTTTGAGCGAACTGGCTTCTACCACATG TTTGAGGTTTACGGTCGAAAGAACATGTTCTCGTTCGCGACCACGAAGCAGCATGGAGAAAGGAAGAAGCTCTTT GCCCACGCCTACGCCAAATCTGCGATGCTCAAAGGACAGAATGCACAAATGGTCGAGCAGAAAGTCAAACTGTAT ATGGATCTGTTGGAACGAGATGGGGGGAAAAGCGAGATCTTTTCTACCTTGCACTATTTCTCCCTCGACACAATC ACCGAGTTTCTTTACGGATCTTTCGGCAAGACTGCATGTCTCGAGGGACAGAGACAAGATTGCGCACTCATTGGA GACATCATCGATATTGCCCGCCGCAAGCTATCGTGGTATGCAGTTCACTTCCCCCACTTCACGGAATGGCTCTAC TCCAGGACCGGAGTTACTGGCTGCATTGCGAAACGGTTTTACCCGATGCAGATGCCAACGACGTACAGCGGTATC AGACTTCACGCGCTGAAAGCCACTCAGAAATATGCCAGTGCTTCTGCCAGCGCGAAAGCGAGCACATCGGCCCTG ATATCCAGACTGTGGAGCCACCACCATTCCCAAAAACCAAATGGACTAGATGATCTTGATATTGCATCGGAATGT GCCGACCATCTTTTGGCAGGCATCGACACCACCAGCGACACACTGATGTTTCTGATTTGGGCTCTTTCTCGACCA GAAAACAGACAATTCCAAGACAAACTCATTGAGGAAGTCTGCAATATTACCGAAGACTCGCTCGATTCGGATGGC ATTCCCAAAGTCGAAAACAGCGACAAGCTTTCTTACCTCGATGCAGTTATCAAAGAGACACTACGCCTCTACGCA CCTCTCCCCGGATCAGAGCCACGCTCACTTCCCACGGCAACCACAATTGATGGCTACACGATTCCACCTGGGACG GTGGTTTCTATCTCCCCATACGCGCTCCATCGTAACCCTGACGTTTTCAAAAATCCCATGAAATTCAATCCCGAC CGCTGGTTGGATCCTTGTGAGAACTTGGCAGAAATGAAGAAATGGTTCTGGGCATTCTCCAGCGGTGGAAGGATG TGTATTGGCATGCATCTGGCAATGGCAGAAATGACTACTTTGGTCGCAGCCATATACCGAAAATACAGAACCACA CCAATGGGGGATTTTGACACTGTCTCCCCTGGTATCACAGGTCGCTATGAGGTGTTCTACGATGATACTTGTAGT CGAATGCGGGAACATGAATGTCAGATTGAATTCACGCCACATTAA |
| Transcript | >Pro_DTO377G3_2|g2590.t1 ATGACTTGGATTCTGATCGCTGCTTTCATAGTAGCCTTTCTTGTCTACCAACTCTCAGTTTCCACTTTGTTTAGC CCTCTTGCACGAATTCCCGGCCCAAAGACTTTCGCCTTGACCAAGTTCAAATTAGCCTATGAGGACTACAAAGGA ACTCGCACGCGAAAGATCAATGCTCTCCATCACCAGTATGGACCTGTCGTTCGTATCGGCCCCAGTGAGGTGACC TTCAACAGCACATCGGCCGTGCGTGCAATCTACGGCGCTGGAAGTGGGTTTGAGCGAACTGGCTTCTACCACATG TTTGAGGTTTACGGTCGAAAGAACATGTTCTCGTTCGCGACCACGAAGCAGCATGGAGAAAGGAAGAAGCTCTTT GCCCACGCCTACGCCAAATCTGCGATGCTCAAAGGACAGAATGCACAAATGGTCGAGCAGAAAGTCAAACTGTAT ATGGATCTGTTGGAACGAGATGGGGGGAAAAGCGAGATCTTTTCTACCTTGCACTATTTCTCCCTCGACACAATC ACCGAGTTTCTTTACGGATCTTTCGGCAAGACTGCATGTCTCGAGGGACAGAGACAAGATTGCGCACTCATTGGA GACATCATCGATATTGCCCGCCGCAAGCTATCGTGGTATGCAGTTCACTTCCCCCACTTCACGGAATGGCTCTAC TCCAGGACCGGAGTTACTGGCTGCATTGCGAAACGGTTTTACCCGATGCAGATGCCAACGACGTACAGCGGTATC AGACTTCACGCGCTGAAAGCCACTCAGAAATATGCCAGTGCTTCTGCCAGCGCGAAAGCGAGCACATCGGCCCTG ATATCCAGACTGTGGAGCCACCACCATTCCCAAAAACCAAATGGACTAGATGATCTTGATATTGCATCGGAATGT GCCGACCATCTTTTGGCAGGCATCGACACCACCAGCGACACACTGATGTTTCTGATTTGGGCTCTTTCTCGACCA GAAAACAGACAATTCCAAGACAAACTCATTGAGGAAGTCTGCAATATTACCGAAGACTCGCTCGATTCGGATGGC ATTCCCAAAGTCGAAAACAGCGACAAGCTTTCTTACCTCGATGCAGTTATCAAAGAGACACTACGCCTCTACGCA CCTCTCCCCGGATCAGAGCCACGCTCACTTCCCACGGCAACCACAATTGATGGCTACACGATTCCACCTGGGACG GTGGTTTCTATCTCCCCATACGCGCTCCATCGTAACCCTGACGTTTTCAAAAATCCCATGAAATTCAATCCCGAC CGCTGGTTGGATCCTTGTGAGAACTTGGCAGAAATGAAGAAATGGTTCTGGGCATTCTCCAGCGGTGGAAGGATG TGTATTGGCATGCATCTGGCAATGGCAGAAATGACTACTTTGGTCGCAGCCATATACCGAAAATACAGAACCACA CCAATGGGGGATTTTGACACTGTCTCCCCTGGTATCACAGGTCGCTATGAGGTGTTCTACGATGATACTTGTAGT CGAATGCGGGAACATGAATGTCAGATTGAATTCACGCCACATTAA |
| Gene | >Pro_DTO377G3_2|g2590.t1 ATGACTTGGATTCTGATCGCTGCTTTCATAGTAGCCTTTCTTGTCTACCAACTCTCAGTTTCCACTTTGTTTAGC CCTCTTGCACGAATTCCCGGCCCAAAGACTTTCGCCTTGACCAAGTTCAAATTAGCCTATGAGGACTACAAAGGA ACTCGCACGCGAAAGATCAATGCTCTCCATCACCAGTATGGACCTGTCGTTCGTATCGGCCCCAGTGAGGTGACC TTCAACAGCACATCGGCCGTGCGTGCAATCTACGGCGCTGGAAGTGGGTTTGAGCGAACTGGCTTCTACCACATG TTTGAGGTTTACGGTCGAAAGAACATGTTCTCGTTCGCGACCACGAAGCAGCATGGAGAAAGGAAGAAGCTCTTT GCCCACGCCTACGCCAAATCTGCGATGCTCAAAGGACAGAATGCACAAATGGTCGAGCAGAAAGTCAAACTGTAT ATGGATCTGTTGGAACGAGATGGGGGGAAAAGCGAGATCTTTTCTACCTTGCACTATTTCTCCCTCGACACAATC ACCGAGTTTCTTTACGGATCTTTCGGCAAGACTGCATGTCTCGAGGGACAGAGACAAGATTGCGCACTCATTGGA GACATCATCGATATTGCCCGCCGCAAGCTATCGTGGTATGCAGTTCACTTCCCCCACTTCACGGAATGGCTCTAC TCCAGGACCGGAGTTACTGGCTGCATTGCGAAACGGTTTTACCCGATGCAGATGCCAACGACGTACAGCGGTATC AGACTTCACGCGCTGAAAGCCACTCAGAAATATGCCAGTGCTTCTGCCAGCGCGAAAGCGAGCACATCGGCCCTG ATATCCAGACTGTGGAGCCACCACCATTCCCAAAAACCAAATGGACTAGATGATCTTGATATTGCATCGGAATGT GCCGACCATCTTTTGGCAGGCATCGACACCACCAGCGACACACTGATGTTTCTGATTTGGGCTCTTTCTCGACCA GAAAACAGACAATTCCAAGACAAACTCATTGAGGAAGTCTGCAATATTACCGAAGACTCGCTCGATTCGGATGGC ATTCCCAAAGTCGAAAACAGCGACAAGCTTTCTTACCTCGATGCAGTTATCAAAGAGACACTACGCCTCTACGCA CCTCTCCCCGGATCAGAGCCACGCTCACTTCCCACGGCAACCACAATTGATGGCTACACGATTCCACCTGGGACG GTGGTTTCTATCTCCCCATACGCGCTCCATCGTAACCCTGACGTTTTCAAAAATCCCATGAAATTCAATCCCGAC CGCTGGTTGGATCCTTGTGAGAACTTGGCAGAAATGAAGAAATGGTTCTGGGCATTCTCCAGCGGTGGAAGGATG TGTATTGGCATGCAGTATGTTCTTTGTTTCCGTGGAGTCGACTTCCAGTCGTGACCATGAAAGATGGCTAACGAG AAGCAGTCTGGCAATGGCAGAAATGACTACTTTGGTCGCAGCCATATACCGAAAATACAGAACCACACCAATGGG GGATTTTGACACTGTCTCCCCTGGTATCACAGGTCGCTATGAGGTGTTCTACGATGATACTTGTAGTCGAATGCG GGTATGTTTAGCTAACATATTTCTCTCGAAGACTCACTAATCATGGAGACAGGAACATGAATGTCAGATTGAATT CACGCCACATTAA |