© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2570.t1 |
| Gene name | |
| Location | scaffold_03:366289..366975 |
| Strand | + |
| Gene length (bp) | 686 |
| Transcript length (bp) | 600 |
| Coding sequence length (bp) | 600 |
| Protein length (aa) | 200 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00583 | Acetyltransf_1 | Acetyltransferase (GNAT) family | 5.6E-20 | 34 | 136 |
| PF13673 | Acetyltransf_10 | Acetyltransferase (GNAT) domain | 2.4E-12 | 49 | 140 |
| PF13508 | Acetyltransf_7 | Acetyltransferase (GNAT) domain | 7.6E-12 | 52 | 136 |
| PF08445 | FR47 | FR47-like protein | 6.7E-11 | 80 | 139 |
| PF13302 | Acetyltransf_3 | Acetyltransferase (GNAT) domain | 1.2E-08 | 48 | 136 |
| PF13523 | Acetyltransf_8 | Acetyltransferase (GNAT) domain | 1.1E-06 | 88 | 142 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008080 | N-acetyltransferase activity | Yes |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | Yes |
| GO:0016410 | N-acyltransferase activity | No |
| GO:0016407 | acetyltransferase activity | No |
| GO:0016740 | transferase activity | No |
| GO:0016746 | acyltransferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 231.57 | 140.74 | 322.39 |
| 5d_25C | Five days - 25 degrees Celsius | 247.86 | 150.71 | 345.01 |
| 7d_25C | Seven days - 25 degrees Celsius | 254.64 | 154.94 | 354.35 |
| 10d_25C | Ten days - 25 degrees Celsius | 353.52 | 215.76 | 491.29 |
| 7d_15C | Seven days - 15 degrees Celsius | 291.23 | 175.36 | 407.10 |
| 7d_30C | Seven days - 30 degrees Celsius | 215.22 | 129.22 | 301.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.826723 | no |
| 3d_25C | 7d_25C | 0.750154 | no |
| 3d_25C | 7d_15C | 0.350340 | no |
| 3d_25C | 7d_30C | 0.814824 | no |
| 3d_25C | 10d_25C | 0.046354 | yes |
| 5d_25C | 7d_25C | 0.937523 | no |
| 5d_25C | 7d_15C | 0.545580 | no |
| 5d_25C | 7d_30C | 0.610910 | no |
| 5d_25C | 10d_25C | 0.101580 | no |
| 7d_25C | 7d_15C | 0.625078 | no |
| 7d_25C | 7d_30C | 0.521135 | no |
| 7d_25C | 10d_25C | 0.132409 | no |
| 7d_15C | 7d_30C | 0.191078 | no |
| 7d_15C | 10d_25C | 0.445576 | no |
| 7d_30C | 10d_25C | 0.018295 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2570.t1 MSNAPDLRYVRYENSREKEYVAAMRQLISKDLSEPYSIYVYRYFLYQWGDLCFLAMDDKDEMVGVVVSKLEPHRD GPLRGYIAMLAVREEYRGRGIATKLVRMAIDAMIERDADEIVLETEITNTGAIKLYERLGFLRSKQLHRYYLNGN SAYRLVLYLKEGVGAIRTALVDPYGLPPPVPGLPDRCEGHSHANMGSLV* |
| Coding | >Pro_DTO377G3_2|g2570.t1 ATGAGCAATGCTCCCGATCTTCGCTACGTGCGATATGAAAATTCGCGCGAAAAGGAGTATGTCGCCGCAATGCGC CAGCTGATCTCCAAAGATCTGTCTGAACCTTACAGCATCTACGTCTACCGCTACTTCTTATACCAATGGGGTGAC CTGTGTTTCCTCGCGATGGACGATAAGGACGAGATGGTCGGGGTCGTGGTATCGAAGCTAGAGCCACACCGCGAC GGCCCGCTGAGAGGTTATATCGCCATGCTGGCCGTGCGCGAAGAGTACCGTGGCCGGGGAATTGCAACCAAGCTA GTGCGCATGGCTATCGATGCTATGATCGAGCGGGATGCAGATGAGATCGTCCTCGAAACCGAAATCACCAATACT GGTGCGATCAAACTGTACGAGCGGCTGGGCTTCCTGCGTAGCAAACAGCTCCACCGATATTACTTGAACGGCAAC TCGGCCTACCGGCTTGTGCTCTACCTTAAAGAAGGTGTGGGTGCGATTCGGACGGCACTTGTTGATCCCTATGGT CTTCCACCACCAGTACCCGGTCTCCCTGATAGGTGTGAAGGGCATTCTCATGCAAACATGGGGTCATTGGTTTGA |
| Transcript | >Pro_DTO377G3_2|g2570.t1 ATGAGCAATGCTCCCGATCTTCGCTACGTGCGATATGAAAATTCGCGCGAAAAGGAGTATGTCGCCGCAATGCGC CAGCTGATCTCCAAAGATCTGTCTGAACCTTACAGCATCTACGTCTACCGCTACTTCTTATACCAATGGGGTGAC CTGTGTTTCCTCGCGATGGACGATAAGGACGAGATGGTCGGGGTCGTGGTATCGAAGCTAGAGCCACACCGCGAC GGCCCGCTGAGAGGTTATATCGCCATGCTGGCCGTGCGCGAAGAGTACCGTGGCCGGGGAATTGCAACCAAGCTA GTGCGCATGGCTATCGATGCTATGATCGAGCGGGATGCAGATGAGATCGTCCTCGAAACCGAAATCACCAATACT GGTGCGATCAAACTGTACGAGCGGCTGGGCTTCCTGCGTAGCAAACAGCTCCACCGATATTACTTGAACGGCAAC TCGGCCTACCGGCTTGTGCTCTACCTTAAAGAAGGTGTGGGTGCGATTCGGACGGCACTTGTTGATCCCTATGGT CTTCCACCACCAGTACCCGGTCTCCCTGATAGGTGTGAAGGGCATTCTCATGCAAACATGGGGTCATTGGTTTGA |
| Gene | >Pro_DTO377G3_2|g2570.t1 ATGAGCAATGCTCCCGATCTTCGCTACGTGCGATATGAAAATTCGCGCGAAAAGGAGTATGTCGCCGCAATGCGC CAGCTGATCTCCAAAGATCTGTCTGAACCTTACAGCATCTACGTCTACCGCTACTTCTTATACCAATGGGGTGAC CTGTGTTTCCTCGCGATGGACGATAAGGACGAGATGGTCGGGGTCGTGGTATCGAAGCTAGAGCCACACCGCGAC GGCCCGCTGAGAGGTTATATCGCCATGCTGGCCGTGCGCGAAGAGTACCGTGGCCGGGGAATTGCAACCAAGCTA GTGCGCATGGCTATCGATGCTATGATCGAGCGGGATGCAGATGAGGTAGGTCTACACAGTGGAGGTGGCTATTGG TCCGCAAATAGGGTGGTCTCGAGGGTATTGTGGCTGACTTGTATGTGTTTGGGCAGATCGTCCTCGAAACCGAAA TCACCAATACTGGTGCGATCAAACTGTACGAGCGGCTGGGCTTCCTGCGTAGCAAACAGCTCCACCGATATTACT TGAACGGCAACTCGGCCTACCGGCTTGTGCTCTACCTTAAAGAAGGTGTGGGTGCGATTCGGACGGCACTTGTTG ATCCCTATGGTCTTCCACCACCAGTACCCGGTCTCCCTGATAGGTGTGAAGGGCATTCTCATGCAAACATGGGGT CATTGGTTTGA |