© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2556.t1 |
| Gene name | |
| Location | scaffold_03:333937..335260 |
| Strand | + |
| Gene length (bp) | 1323 |
| Transcript length (bp) | 1323 |
| Coding sequence length (bp) | 1323 |
| Protein length (aa) | 441 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 4.6E-18 | 43 | 99 |
| PF04193 | PQ-loop | PQ loop repeat | 3.0E-19 | 262 | 321 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 36 | 58 | 22 |
| 2 | 75 | 97 | 22 |
| 3 | 102 | 124 | 22 |
| 4 | 293 | 315 | 22 |
| 5 | 342 | 359 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 31.20 | 16.88 | 45.52 |
| 5d_25C | Five days - 25 degrees Celsius | 31.66 | 17.24 | 46.07 |
| 7d_25C | Seven days - 25 degrees Celsius | 29.57 | 15.84 | 43.30 |
| 10d_25C | Ten days - 25 degrees Celsius | 27.26 | 14.34 | 40.19 |
| 7d_15C | Seven days - 15 degrees Celsius | 36.67 | 20.20 | 53.14 |
| 7d_30C | Seven days - 30 degrees Celsius | 49.76 | 28.75 | 70.77 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.974375 | no |
| 3d_25C | 7d_25C | 0.893438 | no |
| 3d_25C | 7d_15C | 0.606476 | no |
| 3d_25C | 7d_30C | 0.045183 | yes |
| 3d_25C | 10d_25C | 0.688756 | no |
| 5d_25C | 7d_25C | 0.855278 | no |
| 5d_25C | 7d_15C | 0.639947 | no |
| 5d_25C | 7d_30C | 0.048648 | yes |
| 5d_25C | 10d_25C | 0.645884 | no |
| 7d_25C | 7d_15C | 0.462051 | no |
| 7d_25C | 7d_30C | 0.028409 | yes |
| 7d_25C | 10d_25C | 0.827104 | no |
| 7d_15C | 7d_30C | 0.232404 | no |
| 7d_15C | 10d_25C | 0.288765 | no |
| 7d_30C | 10d_25C | 0.008807 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2556.t1 MSPPLLQYLLSGTLPDHCEPTSPFLTAVSSHLHICIPTPLAAISSVLGTLSIVSWLFAQLPQIYKNYQVQSTSGL SIFFLVIWCLGDASNLVGALYTRQAGWQVVIASYYVFVDIALVFQFFWYTHYKPRQNDSYDDLSHSHDSARRNII QGVPPPGHDSDNQTPAPVNMNNKHPEAKDGGFQAGSALDSTHVPTASYSNEKLSSSRRSVRLGSSMQSPPFALPR TMLMASLLCAVLANAAPTDKSDTFISEAPRETIVEIIGRVFSWMSTILYLGSRPPQLYKNYQRKSTEGLSPLLFM AAFCGNLFYSSSMLTNPNAWSDFSPYGGGGWADNHGNNRLEWIGRATPFFLGAFGVLGLDGFMGVQFLMYGDGPE HEDDESFISGDGDDPKRGRSRWRHVHGWMRGWIPSASPRRDSRESSVSQEGQALLGAERGRYGTV* |
| Coding | >Pro_DTO377G3_2|g2556.t1 ATGTCTCCTCCACTATTACAGTACCTCCTCTCTGGGACCCTTCCTGACCACTGTGAACCGACCTCGCCCTTCCTG ACCGCCGTCTCCTCGCATCTCCACATCTGCATCCCCACTCCTCTCGCGGCGATCTCTTCCGTCCTTGGGACCCTC AGCATAGTCTCATGGCTTTTCGCACAACTACCCCAGATTTATAAGAACTACCAAGTGCAGTCGACGTCAGGCTTA TCGATATTTTTCTTGGTAATCTGGTGCCTTGGTGACGCGAGCAACCTCGTTGGAGCGCTATATACCCGACAGGCA GGGTGGCAGGTCGTGATTGCCAGTTATTACGTCTTCGTTGATATCGCTCTGGTATTCCAGTTTTTCTGGTACACT CATTACAAACCTCGCCAGAATGATTCGTATGACGACTTGTCACATTCGCATGACTCGGCTCGTCGAAACATCATT CAAGGCGTGCCTCCTCCAGGCCACGACTCAGACAATCAGACCCCGGCTCCCGTCAACATGAACAACAAGCACCCC GAGGCCAAGGATGGGGGCTTCCAGGCCGGGTCAGCACTCGACTCGACCCATGTGCCAACAGCGTCATACTCAAAC GAGAAATTGAGCTCATCGCGTCGATCTGTAAGGTTGGGCAGTAGCATGCAGAGCCCGCCATTCGCACTGCCCCGG ACGATGCTCATGGCATCACTCCTTTGTGCCGTACTCGCAAACGCTGCCCCCACCGACAAGTCCGACACGTTCATT TCGGAAGCACCGCGGGAGACCATCGTCGAGATCATCGGCCGCGTCTTCTCTTGGATGTCAACAATCCTGTATCTC GGCTCACGCCCTCCACAGCTATACAAAAACTACCAGCGCAAGAGCACTGAAGGTCTTTCCCCACTGCTCTTCATG GCCGCATTCTGTGGGAACCTGTTCTACTCCAGCTCGATGCTCACCAACCCGAATGCTTGGTCCGATTTCTCCCCA TATGGCGGCGGCGGCTGGGCTGACAACCACGGCAATAACAGATTGGAATGGATTGGACGCGCTACGCCGTTCTTC TTGGGTGCATTCGGTGTGTTGGGACTGGACGGGTTCATGGGTGTTCAGTTTCTCATGTATGGCGATGGTCCAGAG CACGAGGATGACGAGAGTTTCATCAGTGGCGATGGGGATGACCCAAAGCGCGGTCGCAGTCGCTGGAGGCATGTT CACGGCTGGATGCGAGGCTGGATCCCCTCTGCTTCGCCCCGGAGGGACTCAAGGGAATCTTCGGTTTCTCAAGAG GGACAGGCTTTGTTGGGCGCAGAGCGCGGCCGCTACGGCACTGTTTGA |
| Transcript | >Pro_DTO377G3_2|g2556.t1 ATGTCTCCTCCACTATTACAGTACCTCCTCTCTGGGACCCTTCCTGACCACTGTGAACCGACCTCGCCCTTCCTG ACCGCCGTCTCCTCGCATCTCCACATCTGCATCCCCACTCCTCTCGCGGCGATCTCTTCCGTCCTTGGGACCCTC AGCATAGTCTCATGGCTTTTCGCACAACTACCCCAGATTTATAAGAACTACCAAGTGCAGTCGACGTCAGGCTTA TCGATATTTTTCTTGGTAATCTGGTGCCTTGGTGACGCGAGCAACCTCGTTGGAGCGCTATATACCCGACAGGCA GGGTGGCAGGTCGTGATTGCCAGTTATTACGTCTTCGTTGATATCGCTCTGGTATTCCAGTTTTTCTGGTACACT CATTACAAACCTCGCCAGAATGATTCGTATGACGACTTGTCACATTCGCATGACTCGGCTCGTCGAAACATCATT CAAGGCGTGCCTCCTCCAGGCCACGACTCAGACAATCAGACCCCGGCTCCCGTCAACATGAACAACAAGCACCCC GAGGCCAAGGATGGGGGCTTCCAGGCCGGGTCAGCACTCGACTCGACCCATGTGCCAACAGCGTCATACTCAAAC GAGAAATTGAGCTCATCGCGTCGATCTGTAAGGTTGGGCAGTAGCATGCAGAGCCCGCCATTCGCACTGCCCCGG ACGATGCTCATGGCATCACTCCTTTGTGCCGTACTCGCAAACGCTGCCCCCACCGACAAGTCCGACACGTTCATT TCGGAAGCACCGCGGGAGACCATCGTCGAGATCATCGGCCGCGTCTTCTCTTGGATGTCAACAATCCTGTATCTC GGCTCACGCCCTCCACAGCTATACAAAAACTACCAGCGCAAGAGCACTGAAGGTCTTTCCCCACTGCTCTTCATG GCCGCATTCTGTGGGAACCTGTTCTACTCCAGCTCGATGCTCACCAACCCGAATGCTTGGTCCGATTTCTCCCCA TATGGCGGCGGCGGCTGGGCTGACAACCACGGCAATAACAGATTGGAATGGATTGGACGCGCTACGCCGTTCTTC TTGGGTGCATTCGGTGTGTTGGGACTGGACGGGTTCATGGGTGTTCAGTTTCTCATGTATGGCGATGGTCCAGAG CACGAGGATGACGAGAGTTTCATCAGTGGCGATGGGGATGACCCAAAGCGCGGTCGCAGTCGCTGGAGGCATGTT CACGGCTGGATGCGAGGCTGGATCCCCTCTGCTTCGCCCCGGAGGGACTCAAGGGAATCTTCGGTTTCTCAAGAG GGACAGGCTTTGTTGGGCGCAGAGCGCGGCCGCTACGGCACTGTTTGA |
| Gene | >Pro_DTO377G3_2|g2556.t1 ATGTCTCCTCCACTATTACAGTACCTCCTCTCTGGGACCCTTCCTGACCACTGTGAACCGACCTCGCCCTTCCTG ACCGCCGTCTCCTCGCATCTCCACATCTGCATCCCCACTCCTCTCGCGGCGATCTCTTCCGTCCTTGGGACCCTC AGCATAGTCTCATGGCTTTTCGCACAACTACCCCAGATTTATAAGAACTACCAAGTGCAGTCGACGTCAGGCTTA TCGATATTTTTCTTGGTAATCTGGTGCCTTGGTGACGCGAGCAACCTCGTTGGAGCGCTATATACCCGACAGGCA GGGTGGCAGGTCGTGATTGCCAGTTATTACGTCTTCGTTGATATCGCTCTGGTATTCCAGTTTTTCTGGTACACT CATTACAAACCTCGCCAGAATGATTCGTATGACGACTTGTCACATTCGCATGACTCGGCTCGTCGAAACATCATT CAAGGCGTGCCTCCTCCAGGCCACGACTCAGACAATCAGACCCCGGCTCCCGTCAACATGAACAACAAGCACCCC GAGGCCAAGGATGGGGGCTTCCAGGCCGGGTCAGCACTCGACTCGACCCATGTGCCAACAGCGTCATACTCAAAC GAGAAATTGAGCTCATCGCGTCGATCTGTAAGGTTGGGCAGTAGCATGCAGAGCCCGCCATTCGCACTGCCCCGG ACGATGCTCATGGCATCACTCCTTTGTGCCGTACTCGCAAACGCTGCCCCCACCGACAAGTCCGACACGTTCATT TCGGAAGCACCGCGGGAGACCATCGTCGAGATCATCGGCCGCGTCTTCTCTTGGATGTCAACAATCCTGTATCTC GGCTCACGCCCTCCACAGCTATACAAAAACTACCAGCGCAAGAGCACTGAAGGTCTTTCCCCACTGCTCTTCATG GCCGCATTCTGTGGGAACCTGTTCTACTCCAGCTCGATGCTCACCAACCCGAATGCTTGGTCCGATTTCTCCCCA TATGGCGGCGGCGGCTGGGCTGACAACCACGGCAATAACAGATTGGAATGGATTGGACGCGCTACGCCGTTCTTC TTGGGTGCATTCGGTGTGTTGGGACTGGACGGGTTCATGGGTGTTCAGTTTCTCATGTATGGCGATGGTCCAGAG CACGAGGATGACGAGAGTTTCATCAGTGGCGATGGGGATGACCCAAAGCGCGGTCGCAGTCGCTGGAGGCATGTT CACGGCTGGATGCGAGGCTGGATCCCCTCTGCTTCGCCCCGGAGGGACTCAAGGGAATCTTCGGTTTCTCAAGAG GGACAGGCTTTGTTGGGCGCAGAGCGCGGCCGCTACGGCACTGTTTGA |